genome.fa.s656.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  104  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19385407--19385438	2	16.0	2	100	0	64	50	0	0	50	1.00
19389632--19389662	7	4.4	7	100	0	62	87	0	0	12	0.55
19391078--19391250	95	1.8	95	92	0	292	35	16	11	36	1.85
19391141--19391199	31	1.9	31	85	0	82	38	13	11	35	1.82
19391173--19391519	126	2.7	127	81	4	353	36	14	11	37	1.82
19399442--19399495	27	2.0	26	82	13	65	53	31	5	9	1.56
19400330--19400372	18	2.2	20	88	12	63	41	11	11	34	1.78
19400338--19400372	18	1.9	18	100	0	70	45	8	11	34	1.71
19400380--19400457	17	4.5	17	75	12	61	35	16	12	34	1.87
19400505--19400560	26	2.1	27	86	3	78	39	12	14	33	1.83
19400621--19400654	17	2.0	17	94	0	59	41	8	17	32	1.80
19400630--19400742	36	3.1	35	70	12	95	47	9	12	30	1.73
19400674--19400774	19	5.5	19	74	7	66	45	13	13	26	1.82
19400709--19400749	17	2.4	17	91	0	64	48	4	12	34	1.62
19400626--19400782	72	2.2	72	85	4	201	46	12	13	27	1.79
19401259--19401311	24	2.2	24	89	0	79	43	26	11	18	1.84
19402494--19402528	15	2.3	15	85	0	52	31	5	11	51	1.61
19402721--19402816	15	6.3	15	73	12	56	22	2	26	48	1.61
19402321--19403076	251	3.0	251	96	0	1386	21	4	29	44	1.72
19402970--19403115	15	9.5	15	72	12	75	20	1	30	47	1.58
19403041--19403099	16	3.7	17	80	10	63	15	0	33	50	1.44
19403089--19403140	16	3.2	16	78	7	61	17	0	26	55	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19403230--19403272	15	2.9	15	79	10	52	20	2	25	51	1.60
19403196--19403272	30	2.6	30	79	2	84	20	2	27	49	1.62
19403368--19403415	24	2.0	24	84	8	62	33	2	0	64	1.05
19403810--19403849	3	13.3	3	100	0	80	32	0	0	67	0.91
19403898--19403956	8	7.4	8	73	19	52	71	3	3	22	1.16
19403898--19403956	24	2.5	24	86	5	75	71	3	3	22	1.16
19405951--19406004	3	18.0	3	96	0	99	66	0	1	31	1.02
19406017--19406062	19	2.5	19	86	6	60	76	0	13	10	1.03
19407095--19407205	43	2.6	43	83	0	141	39	15	17	27	1.89
19410235--19411082	423	2.0	423	91	1	1369	29	18	15	37	1.91
19414424--19414496	4	17.8	4	78	10	67	19	1	5	73	1.09
19414424--19414496	29	2.6	29	78	6	78	19	1	5	73	1.09
19414867--19414907	20	2.0	21	85	9	57	53	0	2	43	1.13
19419532--19419607	37	2.1	37	89	0	116	32	6	15	44	1.73
19419638--19419672	16	2.2	16	89	0	52	25	0	17	57	1.40
19420053--19420098	24	1.9	24	86	0	65	17	4	10	67	1.37
19426032--19426393	43	8.3	43	76	9	315	44	17	14	24	1.86
19426017--19426393	86	4.3	87	81	9	387	43	18	14	23	1.86
19426038--19426393	132	2.7	132	77	8	336	44	17	14	23	1.85
19426380--19426449	22	3.2	22	97	0	131	57	17	4	21	1.57
19426431--19426574	73	2.0	71	86	2	198	49	16	11	22	1.78
19426504--19426810	43	7.2	43	79	10	261	44	17	11	26	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19426344--19426641	160	1.9	160	81	2	366	49	18	11	21	1.78
19426504--19426811	85	3.6	85	76	8	232	44	17	12	25	1.84
19426968--19427019	16	3.3	15	76	12	52	38	11	19	30	1.87
19428475--19428512	20	1.9	20	84	10	51	10	13	0	76	1.02
19428489--19428530	9	4.7	9	85	11	59	7	11	0	80	0.88
19433196--19433228	16	1.9	18	88	11	52	72	6	6	15	1.24
19440180--19440243	10	6.2	10	78	7	74	81	1	17	0	0.77
19440180--19440243	12	4.9	13	79	9	69	81	1	17	0	0.77
19441781--19442120	108	3.2	107	81	6	350	18	17	15	47	1.82
19441222--19442648	36	39.7	36	70	9	263	19	18	14	47	1.83
19441826--19442169	143	2.4	143	83	4	408	18	18	15	47	1.83
19441855--19442268	143	2.9	143	81	3	375	18	18	15	46	1.84
19442086--19442242	71	2.2	72	84	1	199	18	19	19	42	1.89
19441627--19442529	72	12.6	72	74	6	319	19	18	14	47	1.83
19442368--19442640	107	2.5	108	85	1	341	19	19	13	48	1.81
19442446--19442631	71	2.6	71	82	5	230	20	18	13	46	1.83
19442675--19442728	11	4.6	11	78	17	56	77	16	0	5	0.94
19442679--19442732	20	2.7	19	80	8	63	79	14	0	5	0.90
19442727--19442769	13	3.4	12	84	15	52	79	0	20	0	0.74
19449592--19449685	8	11.8	8	84	8	113	72	1	17	9	1.17
19450748--19451049	24	13.5	22	83	11	286	39	4	16	39	1.69
19450748--19450818	21	3.2	23	82	9	71	36	4	21	38	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19450760--19450947	42	4.3	43	82	14	133	37	4	18	39	1.70
19450748--19451046	152	1.9	154	85	7	408	39	4	16	38	1.70
19450936--19451045	10	9.1	13	64	28	64	45	3	13	37	1.61
19451128--19451257	45	2.9	45	75	12	115	38	10	13	38	1.78
19451259--19451324	23	3.0	22	68	12	53	33	12	18	36	1.88
19451300--19451445	43	3.4	43	82	2	152	28	6	19	45	1.76
19451349--19451530	21	8.5	21	70	7	105	28	8	19	43	1.79
19451349--19451487	64	2.2	65	81	6	167	28	5	20	45	1.74
19451413--19451559	43	3.4	43	83	2	161	29	8	17	43	1.79
19451552--19451605	29	1.9	28	88	7	83	25	14	14	44	1.84
19451620--19451695	17	4.6	16	77	9	73	35	9	9	46	1.68
19451621--19451738	49	2.3	49	85	7	148	33	9	11	46	1.71
19451638--19451734	17	5.8	16	76	11	70	30	9	13	46	1.74
19451772--19451837	20	3.4	19	70	15	55	33	9	6	51	1.58
19451867--19451909	19	2.3	19	84	4	52	32	16	4	46	1.67
19451923--19452025	18	5.6	19	73	15	74	28	11	15	44	1.81
19451946--19452025	37	2.2	36	82	6	90	25	11	17	46	1.81
19451948--19452105	86	1.8	85	82	4	201	28	12	13	46	1.79
19452034--19452095	17	3.5	18	83	14	76	29	9	9	51	1.66
19452895--19453183	149	1.9	150	93	0	499	44	10	21	23	1.83
19453346--19453396	16	3.1	16	81	10	59	19	5	5	68	1.31
19453559--19453821	122	2.2	121	80	3	278	42	12	10	34	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19460255--19460287	16	2.0	17	94	5	59	81	0	6	12	0.85
19461731--19461802	13	5.8	12	72	27	53	5	2	11	80	0.98
19461746--19461810	7	8.6	7	74	15	58	6	1	10	81	0.93
19461731--19461805	24	3.0	23	77	19	80	5	2	10	81	0.95
19461731--19461804	16	4.7	16	77	15	57	5	2	10	81	0.96
19461745--19461810	16	4.3	15	76	16	64	6	1	10	81	0.92
19461841--19462143	36	8.4	36	77	5	243	53	14	15	16	1.74
19461841--19462212	36	10.3	36	70	12	172	53	13	15	16	1.73
19461841--19462213	73	5.2	72	73	7	274	53	13	15	16	1.73
19461894--19462188	108	2.7	108	78	4	308	53	14	15	15	1.73
19461841--19462209	144	2.5	144	76	5	332	53	13	15	16	1.73
19462375--19462444	36	1.9	37	85	2	97	30	5	20	44	1.74
19462455--19462684	98	2.4	98	78	5	245	30	14	18	36	1.91
19463161--19463193	14	2.5	13	90	9	50	9	6	0	84	0.76
19464127--19464227	23	4.3	23	77	12	80	6	3	6	82	0.95
19464136--19464228	15	6.0	15	78	14	73	6	2	8	82	0.90
19464136--19464228	48	1.9	48	89	4	143	6	2	8	82	0.90
19464136--19464227	8	11.6	8	76	11	73	6	2	7	83	0.87
19469636--19469661	13	2.0	13	100	0	52	38	15	0	46	1.46
19470215--19470346	30	4.4	30	71	11	90	20	2	25	51	1.59
19470215--19470323	15	7.3	15	78	4	103	18	0	27	53	1.51
19470189--19470423	8	30.9	8	66	14	61	19	2	29	48	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19470208--19470369	45	3.6	45	76	6	152	19	1	26	51	1.57
19470365--19470431	32	2.1	31	83	8	82	20	1	29	47	1.59
19470439--19470539	15	6.8	15	73	11	84	13	4	29	51	1.62
19470437--19470540	30	3.5	30	80	3	113	15	4	29	50	1.65
19470823--19470864	21	2.1	20	86	8	59	26	2	0	71	0.98
19470841--19470877	13	2.6	14	91	8	58	29	2	0	67	1.04
19471132--19471191	20	2.9	20	78	9	59	70	3	3	23	1.18
19473297--19473347	24	2.0	24	85	7	66	3	9	1	84	0.83
19473304--19473343	16	2.5	16	84	8	55	5	7	2	85	0.83
19473315--19473356	19	2.2	19	87	8	59	4	4	2	88	0.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127