genome.fa.s656.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  18  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4191265--4191363	50	2.0	50	88	7	148	52	7	4	36	1.48
4202197--4202229	14	2.5	13	86	13	50	78	0	0	21	0.75
4207407--4207501	16	5.8	17	68	22	60	48	1	0	50	1.07
4207444--4207531	17	5.3	17	66	16	51	50	1	2	46	1.21
4207430--4207492	33	1.9	33	90	0	99	50	1	0	47	1.10
4207664--4207702	17	2.4	17	91	4	62	51	0	0	48	1.00
4210081--4210530	152	3.0	152	94	1	785	37	17	14	29	1.90
4210562--4210591	11	2.7	11	100	0	60	80	6	0	13	0.91
4210997--4211040	20	2.2	20	95	0	79	4	25	31	38	1.76
4211004--4211048	20	2.2	20	84	0	54	11	22	33	33	1.89
4211451--4211488	16	2.5	16	87	8	53	84	0	0	15	0.63
4211451--4211493	13	3.0	14	83	12	52	81	0	2	16	0.79
4211618--4211643	3	8.7	3	100	0	52	69	0	0	30	0.89
4211918--4212012	1	95.0	1	74	0	64	7	0	7	85	0.75
4211924--4211996	9	8.7	9	86	10	86	8	0	8	83	0.81
4211918--4212013	18	5.8	17	80	15	94	7	0	8	84	0.78
4211934--4212012	9	8.7	9	85	9	72	6	0	7	86	0.72
4212020--4212666	42	15.5	41	89	7	894	36	25	16	21	1.94
4212020--4212666	83	7.7	83	87	7	900	36	25	16	21	1.94
4212485--4212630	51	3.0	51	80	20	213	37	28	17	17	1.92
4213913--4213956	20	2.1	21	91	4	72	4	13	0	81	0.83
4214363--4214387	1	25.0	1	100	0	50	0	0	0	100	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4217596--4218045	152	3.0	152	93	1	767	38	17	14	30	1.90
4218070--4218103	17	1.9	17	94	5	59	82	5	0	11	0.83
4218070--4218104	18	1.9	18	94	0	61	82	5	0	11	0.82
4218439--4218484	20	2.3	20	84	0	56	17	21	28	32	1.96
4218954--4218990	11	3.2	11	92	7	56	86	0	0	13	0.57
4218954--4218987	17	2.1	17	89	10	54	88	0	0	11	0.52
4218954--4218997	16	2.9	15	83	9	54	81	0	2	15	0.78
4219122--4219147	3	8.7	3	100	0	52	69	0	0	30	0.89
4221852--4221899	24	2.0	25	91	4	80	47	0	0	52	1.00
4221888--4221988	17	6.1	17	67	17	52	49	1	2	45	1.28
4221874--4221936	33	1.9	33	90	0	99	50	1	0	47	1.10
4222094--4222132	17	2.4	17	91	4	62	51	0	0	48	1.00
4223527--4223561	5	6.6	5	87	12	52	82	0	0	17	0.66
4223535--4223612	16	4.9	15	74	20	70	71	1	5	21	1.12
4223954--4224026	20	3.5	20	76	12	85	46	23	5	24	1.73
4223965--4224064	42	2.4	42	93	0	164	44	25	6	25	1.76
4224365--4224399	3	11.7	3	100	0	70	68	0	0	31	0.90
4225558--4225613	28	2.0	28	92	0	94	30	8	23	37	1.85
4227164--4227210	23	2.0	23	83	0	58	29	8	14	46	1.74
4229089--4229338	125	2.0	125	99	0	491	34	15	7	42	1.75
4233012--4233741	244	3.0	244	92	1	1166	38	10	8	42	1.69
4233979--4234016	18	2.1	19	90	5	60	39	5	0	55	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4233253--4235051	611	3.0	591	85	7	2370	41	9	7	40	1.67
4236031--4236055	9	2.8	9	100	0	50	20	12	0	68	1.21
4236225--4236250	2	13.0	2	100	0	52	50	0	0	50	1.00
4237539--4237563	10	2.5	10	100	0	50	32	0	0	68	0.90
4238022--4238056	8	4.5	8	92	3	54	14	0	5	80	0.89
4239044--4239098	21	2.5	21	85	5	65	63	1	5	29	1.27
4239368--4239406	6	6.5	6	87	0	51	48	33	17	0	1.48
4239671--4239718	9	5.3	9	89	0	60	52	33	14	0	1.42
4239678--4239721	9	4.9	9	91	0	61	47	34	18	0	1.49
4239690--4239728	15	2.6	15	91	0	60	46	30	23	0	1.53
4241389--4241641	134	1.9	132	95	2	463	20	41	5	32	1.77
4241905--4241980	37	2.1	37	94	0	134	36	6	19	36	1.78
4242245--4242269	2	12.5	2	100	0	50	0	52	0	48	1.00
4247205--4247233	2	14.5	2	100	0	58	0	48	0	51	1.00
4251493--4251598	30	3.6	30	81	9	112	38	2	0	57	1.20
4253788--4253825	17	2.3	17	86	4	51	44	2	2	50	1.30
4253787--4253828	16	2.5	17	76	11	50	47	2	2	47	1.28
4256918--4256943	2	13.0	2	100	0	52	50	0	0	50	1.00
4259381--4259410	14	2.1	14	100	0	60	66	0	26	6	1.16
4283092--4283129	3	12.7	3	100	0	76	31	0	0	68	0.90
4284139--4284210	29	2.4	29	81	9	83	44	1	4	50	1.30
4285512--4285547	7	5.1	7	96	0	54	77	0	0	22	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4285516--4285553	14	2.5	15	83	12	51	76	2	0	21	0.91
4297557--4297622	32	2.1	32	91	5	107	34	16	9	39	1.80
4299827--4299853	3	9.0	3	100	0	54	33	0	0	66	0.92
4302570--4302603	3	11.3	3	100	0	68	32	0	0	67	0.91
4309148--4309205	25	2.3	25	82	11	66	51	1	0	46	1.11
4309276--4309432	15	11.0	15	68	24	99	42	0	1	55	1.15
4309276--4309432	31	5.5	29	72	17	134	42	0	1	55	1.15
4309331--4309373	22	2.0	21	86	4	59	41	0	2	55	1.12
4309368--4309426	23	2.5	23	86	8	75	44	1	0	54	1.10
4313682--4313739	29	2.0	29	82	0	71	53	0	5	41	1.23
4324075--4324109	17	2.1	17	94	0	61	31	0	0	68	0.90
4329663--4329698	14	2.8	13	88	12	56	30	0	2	66	1.06
4329691--4329735	21	2.2	20	92	7	74	46	0	0	53	1.00
4329697--4329744	21	2.2	23	92	7	82	47	0	0	52	1.00
4331626--4331660	18	1.9	18	88	0	52	37	0	17	45	1.48
4333613--4333776	86	1.9	85	83	6	215	40	23	7	29	1.81
4333920--4333967	19	2.5	19	75	0	51	27	18	18	35	1.95
4336056--4336112	22	2.5	23	82	5	71	68	0	1	29	1.00
4336124--4336184	30	2.1	31	84	9	83	44	1	0	54	1.10
4339884--4339919	3	12.0	3	93	0	63	30	0	33	36	1.58
4342142--4342208	32	2.2	32	83	5	84	55	4	5	34	1.45
4346750--4346798	16	3.1	16	82	8	55	44	0	2	53	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4359182--4359230	24	2.1	23	84	3	62	57	4	8	30	1.47
4359222--4359280	23	2.6	23	81	8	66	44	0	0	55	0.99
4359271--4359347	31	2.5	32	81	10	88	51	0	0	48	1.00
4366436--4366474	16	2.5	15	88	8	60	58	7	10	23	1.56
4372204--4372228	9	2.8	9	100	0	50	24	0	0	76	0.80
4372529--4372569	21	1.9	22	95	5	75	29	4	7	58	1.46
4372534--4372575	21	2.0	21	86	4	59	35	4	4	54	1.42
4372611--4372677	24	2.8	24	80	6	82	43	4	0	52	1.21
4372752--4372803	23	2.3	23	83	9	63	42	1	0	55	1.10
4382381--4382405	11	2.3	11	100	0	50	0	8	0	92	0.40
4400536--4400573	19	2.0	19	89	0	58	68	0	0	31	0.90
4401477--4401527	23	2.3	22	89	3	75	39	1	3	54	1.30
4401497--4401539	21	2.0	22	86	4	61	39	2	4	53	1.34
4401477--4401542	22	3.0	22	82	6	62	40	3	4	51	1.38
4412717--4412759	23	1.9	22	85	4	59	30	0	9	60	1.28
4412788--4412879	47	2.0	47	100	0	184	52	7	4	35	1.50
4414443--4414494	27	2.0	26	84	3	68	67	5	1	25	1.23
4414539--4414579	16	2.7	15	85	7	55	65	2	0	31	1.05
4420148--4420206	29	2.0	29	100	0	118	38	13	13	33	1.84
4427003--4427077	19	3.7	20	68	18	64	58	4	2	34	1.31
4427008--4427079	25	3.2	25	62	25	68	61	4	2	31	1.29
4426988--4427088	43	2.3	43	94	0	184	60	2	1	34	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4427816--4427900	25	3.4	25	71	12	75	45	0	2	51	1.13
4428886--4428941	22	2.5	22	83	8	69	48	1	7	42	1.41
4428990--4429026	16	2.3	16	90	9	58	78	2	10	8	1.06
4429376--4429411	17	2.2	16	90	5	54	47	0	0	52	1.00
4429863--4429903	21	2.0	21	90	0	64	46	12	0	41	1.41
4433620--4433691	31	2.3	31	97	0	135	44	2	1	51	1.24
4442220--4442254	19	1.9	17	88	11	52	74	2	5	17	1.14
4443635--4443689	26	2.1	26	82	0	65	40	0	9	50	1.34
4450608--4450692	42	2.0	42	83	0	107	31	12	8	47	1.72
4457415--4457528	41	2.8	41	82	2	131	39	14	7	38	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127