genome.fa.s656.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  48  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9515904--9515956	24	2.1	26	89	6	83	56	7	11	24	1.60
9520182--9520224	22	2.0	22	86	4	61	46	6	6	39	1.58
9520184--9520235	22	2.4	22	78	9	54	51	5	7	34	1.54
9521293--9521341	24	2.0	26	92	8	84	61	8	10	20	1.53
9525592--9525657	22	3.0	22	77	0	78	45	7	9	37	1.64
9525594--9525668	22	3.4	22	77	3	62	49	6	9	34	1.61
9530121--9530171	26	2.0	26	92	0	84	64	1	5	27	1.27
9530882--9530958	34	2.3	34	83	0	91	48	7	9	35	1.64
9536871--9536905	8	4.1	8	86	13	52	51	0	11	37	1.38
9541523--9541551	14	2.1	14	100	0	58	51	0	20	27	1.47
9543731--9543779	17	2.9	17	80	17	57	46	0	2	51	1.12
9544699--9544727	13	2.1	14	93	6	51	75	0	10	13	1.04
9545586--9545614	8	3.6	8	100	0	58	13	0	34	51	1.42
9548130--9548180	20	2.5	20	83	6	66	68	1	0	29	1.00
9548134--9548179	11	4.3	11	78	13	51	69	2	0	28	1.00
9548148--9548201	26	2.2	25	83	12	67	62	7	0	29	1.22
9570876--9570903	14	2.0	14	100	0	56	50	7	0	42	1.30
9571006--9571040	10	3.4	10	88	7	52	37	2	0	60	1.12
9571008--9571058	23	2.3	22	80	6	59	41	1	1	54	1.22
9571055--9571101	16	3.0	15	90	6	67	51	4	0	44	1.21
9571106--9571131	13	2.0	13	100	0	52	69	0	0	30	0.89
9571240--9571274	2	17.5	2	87	0	52	42	0	5	51	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9571311--9571360	9	5.0	10	81	16	59	32	0	4	64	1.12
9571393--9571426	14	2.4	14	90	9	52	44	0	5	50	1.26
9571390--9571464	35	2.1	35	83	11	91	44	0	6	49	1.28
9574583--9574941	161	2.2	159	79	8	377	42	13	8	34	1.76
9578328--9578373	21	2.2	21	96	0	83	32	19	15	32	1.93
9581468--9581501	13	2.6	13	85	0	50	35	0	11	52	1.38
9581921--9582094	64	2.7	62	71	11	163	33	10	9	45	1.71
9582634--9582701	28	2.4	27	80	7	91	26	4	22	47	1.70
9582688--9582764	12	6.3	12	69	3	55	20	10	25	42	1.84
9585192--9585639	222	2.0	223	89	2	686	32	10	15	41	1.80
9586330--9586568	129	1.9	129	82	3	302	33	11	12	42	1.79
9586532--9586660	64	2.0	63	80	8	145	28	13	13	43	1.83
9589025--9589096	26	2.8	26	89	4	92	54	6	8	30	1.57
9589261--9589286	6	4.3	6	100	0	52	61	0	0	38	0.96
9591268--9591301	17	1.9	17	88	5	50	26	2	5	64	1.30
9591963--9592007	19	2.4	18	82	13	56	55	4	2	37	1.32
9594518--9594553	12	2.9	12	87	4	54	27	2	0	69	1.02
9594833--9594864	15	2.1	15	94	0	55	46	12	0	40	1.42
9596993--9597066	29	2.6	27	75	12	76	17	2	5	74	1.13
9597921--9597947	14	1.9	14	100	0	54	48	14	0	37	1.45
9599870--9599917	3	16.0	3	100	0	96	33	0	0	66	0.92
9603052--9603142	41	2.2	42	82	7	105	34	4	10	50	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9607126--9607155	12	2.6	11	90	10	51	10	6	3	80	1.01
9613183--9613275	19	4.9	19	75	7	82	15	1	35	48	1.52
9613156--9613328	32	5.3	32	75	8	138	14	1	38	45	1.55
9613206--9613328	46	2.7	45	81	8	144	15	1	38	44	1.56
9613156--9613328	7	26.6	7	71	16	113	14	1	38	45	1.55
9613319--9613366	19	2.5	19	82	3	51	14	4	41	39	1.65
9618475--9618525	16	3.1	16	78	16	50	5	11	1	80	0.97
9632058--9632111	22	2.5	22	81	0	63	38	9	9	42	1.69
9632117--9632176	16	3.8	16	72	12	52	43	8	10	38	1.68
9632220--9632278	22	2.7	22	89	0	91	42	8	10	38	1.69
9632419--9632471	22	2.4	23	87	6	74	33	9	15	41	1.79
9632058--9632492	178	2.4	176	80	10	463	39	8	9	42	1.69
9634023--9634094	37	1.9	37	86	5	101	51	13	13	20	1.76
9635066--9635121	26	2.2	26	96	0	103	28	8	19	42	1.81
9636407--9636477	21	3.4	20	76	7	70	28	8	11	52	1.66
9638012--9638075	30	2.1	31	97	2	121	28	17	3	51	1.60
9638049--9638173	63	2.0	63	96	3	234	40	8	7	44	1.61
9638349--9638401	9	5.7	10	80	10	51	33	0	0	66	0.92
9638349--9638413	10	6.4	11	81	15	54	33	0	0	66	0.92
9642951--9642996	22	2.0	23	83	4	58	60	19	0	19	1.36
9646353--9646389	18	2.1	18	89	0	56	51	10	10	27	1.70
9647965--9647993	13	2.1	14	93	6	51	55	13	0	31	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9649221--9649276	9	6.1	9	73	10	51	73	0	3	23	0.99
9649501--9649530	7	4.3	7	91	0	51	23	0	3	73	0.98
9659080--9659118	20	2.0	20	85	10	53	58	15	2	23	1.49
9662284--9662323	20	2.0	20	85	9	55	40	5	0	55	1.22
9663487--9663515	14	2.0	15	93	6	51	86	6	0	6	0.72
9663493--9663530	19	1.9	19	89	5	58	81	5	2	10	0.94
9664962--9665001	2	20.0	2	100	0	80	50	0	0	50	1.00
9665746--9665794	24	2.1	22	88	7	71	81	6	2	10	0.94
9665747--9665798	18	2.8	18	86	11	70	80	5	1	11	0.96
9671114--9671142	2	14.5	2	100	0	58	0	51	0	48	1.00
9671863--9671932	35	1.9	36	85	5	97	48	1	2	47	1.25
9673519--9673558	14	2.9	14	84	0	53	57	0	2	40	1.12
9679228--9679274	17	2.8	17	80	0	58	29	2	21	46	1.63
9679616--9679983	119	3.0	119	88	8	587	38	16	13	31	1.88
9679594--9679966	126	3.0	126	87	8	611	37	17	12	32	1.87
9680098--9680131	18	1.9	18	94	5	61	52	5	5	35	1.50
9680484--9680606	60	2.1	59	82	11	144	23	1	16	58	1.47
9680506--9680593	27	2.8	32	72	19	87	22	2	18	56	1.52
9688134--9688171	19	2.0	20	94	5	69	42	2	2	52	1.29
9688864--9688897	15	2.2	16	89	5	52	61	0	0	38	0.96
9690135--9690159	2	12.5	2	100	0	50	52	0	0	48	1.00
9691853--9691900	16	3.1	16	77	17	55	54	10	0	35	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9699883--9700619	365	2.0	365	98	0	1422	31	11	16	40	1.84
9705528--9705566	15	2.5	15	87	4	51	69	0	12	17	1.19
9717396--9717534	35	4.0	35	76	8	106	19	19	10	50	1.76
9717538--9717629	35	2.6	35	81	6	98	21	17	13	47	1.81
9717573--9717795	35	6.4	35	73	7	116	21	18	10	49	1.77
9717642--9717806	34	4.8	34	76	5	125	23	20	7	49	1.73
9717991--9718112	35	3.5	35	79	0	136	18	12	13	55	1.68
9717955--9718126	70	2.5	70	80	3	168	17	13	14	54	1.71
9718000--9718149	70	2.1	70	82	2	185	16	15	14	53	1.74
9718382--9718413	6	4.9	7	88	11	50	90	9	0	0	0.45
9718381--9718413	13	2.5	13	90	0	57	90	9	0	0	0.44
9718652--9718676	13	1.9	13	100	0	50	40	16	20	24	1.91
9718888--9719283	144	2.7	144	82	6	464	33	15	10	39	1.82
9721884--9721964	35	2.4	32	80	11	99	58	20	11	9	1.61
9721883--9722281	137	2.9	138	76	4	320	53	17	15	13	1.73
9721909--9722286	102	3.6	106	76	8	275	53	17	15	13	1.72
9721911--9722322	71	5.8	68	74	11	260	54	17	14	13	1.71
9722193--9722353	38	4.3	39	73	10	113	57	19	11	11	1.64
9722156--9722322	74	2.3	70	82	10	185	57	19	11	11	1.64
9722079--9722333	109	2.3	108	78	8	273	56	17	13	12	1.68
9722154--9722384	110	2.1	109	80	5	245	56	18	11	13	1.67
9721894--9722475	35	16.2	36	75	8	267	55	16	13	13	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9722805--9722897	21	4.5	21	76	8	109	27	9	26	35	1.88
9723639--9723753	37	3.0	37	84	5	140	48	13	4	33	1.61
9725404--9725434	16	1.9	16	93	0	53	48	6	9	35	1.62
9728517--9728568	20	2.8	18	80	11	59	17	1	1	78	0.93
9728517--9728568	9	6.0	9	76	15	56	17	1	1	78	0.93
9729831--9729970	73	1.9	75	94	5	250	28	7	6	57	1.50
9730997--9731033	17	2.2	17	90	0	56	5	0	10	83	0.79
9731012--9731046	15	2.2	16	90	5	54	5	2	14	77	1.07
9731593--9731623	8	4.0	8	91	8	55	25	0	0	74	0.82
9731593--9731624	15	2.1	15	100	0	64	28	0	0	71	0.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127