genome.fa.s656.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  58  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11280717--11280827	43	2.6	43	77	7	116	36	10	7	45	1.67
11280717--11280931	22	9.9	22	69	6	98	35	12	5	46	1.64
11280804--11280911	44	2.5	44	80	6	121	35	12	3	48	1.60
11280946--11280991	22	2.1	22	84	8	58	39	6	10	43	1.66
11281217--11281326	22	5.0	21	75	8	94	37	7	2	52	1.43
11281227--11281326	44	2.3	44	78	3	112	36	8	3	53	1.46
11281130--11281325	66	3.0	65	76	9	198	35	8	3	52	1.49
11286015--11286066	25	2.1	25	85	7	70	48	19	9	23	1.78
11286871--11287422	238	2.3	237	84	4	684	42	11	11	33	1.78
11287196--11287771	187	3.1	184	84	5	696	40	11	12	35	1.79
11290393--11290437	21	2.1	21	91	0	72	28	8	24	37	1.86
11297744--11297777	16	2.2	16	94	5	61	50	2	0	47	1.16
11297798--11297822	5	5.0	5	100	0	50	80	0	0	20	0.72
11298811--11298862	27	1.9	27	84	7	70	59	5	0	34	1.21
11301082--11301121	2	20.0	2	89	0	62	45	0	0	55	0.99
11308806--11308853	22	2.2	21	89	10	71	77	0	10	12	1.00
11310487--11310669	53	3.5	51	75	8	188	27	9	8	54	1.62
11310510--11310718	106	2.0	104	80	7	235	30	7	6	55	1.54
11310970--11311015	25	1.9	23	86	8	65	43	6	4	45	1.49
11311097--11311138	4	11.0	4	80	10	52	73	2	0	23	0.94
11315619--11315657	7	5.6	7	85	11	53	64	0	2	33	1.08
11327188--11327643	57	7.9	58	85	6	532	36	11	7	44	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11330035--11330064	13	2.3	13	94	0	51	66	3	6	23	1.30
11330214--11330249	14	2.6	14	87	12	56	8	5	5	80	1.01
11330214--11330250	15	2.5	15	91	4	58	10	5	5	78	1.08
11330261--11330521	116	2.4	108	83	10	343	28	18	14	38	1.90
11330491--11330652	41	3.9	41	86	2	218	37	20	16	24	1.93
11330638--11330666	14	2.1	14	100	0	58	44	6	20	27	1.77
11330652--11330959	42	7.4	41	91	3	490	37	21	16	24	1.93
11330652--11330959	83	3.7	83	91	4	503	37	21	16	24	1.93
11330652--11330959	125	2.5	125	95	0	535	37	21	16	24	1.93
11331256--11331338	43	1.9	43	83	9	107	36	14	10	38	1.81
11332662--11332741	32	2.5	32	78	19	87	10	15	0	75	1.05
11335027--11335378	172	2.0	172	95	0	623	30	18	14	36	1.91
11337351--11337499	57	2.6	57	88	7	214	35	15	8	40	1.77
11340764--11340788	7	3.6	7	100	0	50	84	0	0	16	0.63
11346095--11346163	34	2.0	34	97	0	129	21	18	2	56	1.55
11356439--11356472	16	2.1	16	94	0	59	26	0	35	38	1.57
11367616--11367651	16	2.2	16	90	0	54	52	2	0	44	1.15
11369196--11369225	8	3.9	8	95	4	53	13	0	0	86	0.57
11369018--11369415	189	2.1	193	80	8	440	36	9	6	47	1.61
11370423--11370452	16	1.9	15	93	6	51	73	3	0	23	0.98
11370771--11371266	43	11.8	43	82	3	505	43	15	14	26	1.86
11383273--11383395	52	2.4	52	79	6	133	26	14	9	48	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11383307--11383408	52	1.9	52	86	9	145	24	12	6	55	1.61
11384647--11384711	3	21.7	3	100	0	130	33	0	0	66	0.92
11384767--11384814	24	2.0	23	92	4	78	70	4	2	22	1.15
11384980--11385013	17	2.0	17	88	11	52	64	0	11	23	1.26
11385319--11385367	24	2.0	24	84	7	64	34	8	22	34	1.84
11389452--11389488	8	4.3	9	86	10	51	70	2	8	18	1.25
11390968--11391020	25	2.1	25	82	6	63	32	5	11	50	1.61
11403376--11403561	91	2.0	91	93	0	318	40	5	5	48	1.50
11403540--11403596	28	2.0	29	89	3	89	40	1	3	54	1.28
11406197--11406235	1	39.0	1	89	0	60	94	0	5	0	0.29
11407024--11407052	6	4.8	6	100	0	58	34	48	0	17	1.47
11416859--11416885	3	9.0	3	100	0	54	33	0	33	33	1.58
11417412--11417455	22	1.9	22	86	9	61	40	0	4	54	1.21
11420095--11420130	16	2.2	16	100	0	72	25	30	0	44	1.54
11422121--11422154	12	2.7	13	90	4	52	55	0	0	44	0.99
11422922--11422966	22	2.0	23	82	8	56	6	20	2	71	1.20
11429568--11429603	18	2.0	18	94	0	63	52	11	13	22	1.72
11431629--11431705	40	1.9	40	84	5	102	11	12	10	64	1.49
11435160--11435196	16	2.3	16	95	0	65	54	0	2	43	1.14
11440430--11440552	65	1.9	65	90	6	196	26	17	4	52	1.63
11453765--11453797	2	16.5	2	100	0	66	48	0	0	51	1.00
11453969--11453996	7	4.0	7	100	0	56	28	28	14	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11453842--11454033	97	1.9	94	84	12	233	43	12	10	33	1.77
11454485--11454527	22	2.0	22	100	0	86	41	18	13	25	1.88
11459304--11459328	2	12.5	2	100	0	50	52	0	0	48	1.00
11460708--11460755	21	2.3	20	78	3	51	33	2	0	64	1.05
11468992--11469016	2	12.5	2	100	0	50	52	0	0	48	1.00
11469191--11469439	134	1.9	132	81	9	308	38	14	10	36	1.80
11470892--11470924	12	2.6	13	80	9	50	75	0	3	21	0.93
11472673--11472713	17	2.4	17	87	0	55	41	12	9	36	1.76
11474406--11474460	22	2.6	21	82	5	65	1	16	0	81	0.77
11474404--11474460	21	2.7	21	80	0	69	1	15	0	82	0.75
11485456--11485514	22	2.8	20	84	10	64	10	5	11	72	1.25
11485857--11485940	29	2.8	29	77	16	75	28	20	5	45	1.74
11485965--11486069	31	3.5	30	79	5	113	36	8	20	34	1.84
11488336--11488567	117	2.0	117	90	0	365	23	19	18	38	1.93
11499351--11499585	120	2.0	120	88	3	357	24	27	27	20	1.99
11499871--11500041	90	1.9	90	90	2	272	34	19	22	23	1.97
11499950--11500166	112	1.9	112	88	1	328	35	17	23	23	1.96
11503610--11503685	38	2.0	38	94	0	134	26	15	18	39	1.91
11510433--11510475	18	2.4	18	80	0	50	37	23	9	30	1.86
11510912--11510963	21	2.5	21	90	6	79	50	0	0	50	1.00
11510912--11510963	22	2.5	22	93	6	90	50	0	0	50	1.00
11511364--11511466	31	3.4	30	77	6	91	36	12	18	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11511386--11511466	30	2.7	30	84	5	92	34	13	19	32	1.91
11511386--11511577	61	3.1	60	75	12	169	35	14	17	32	1.90
11511386--11511529	31	4.7	30	78	10	139	35	12	18	33	1.89
11511412--11511535	15	8.1	16	68	12	66	36	12	18	32	1.89
11511386--11511621	62	3.8	60	74	9	181	36	13	16	32	1.88
11512220--11512290	29	2.4	30	78	4	81	36	9	14	39	1.79
11512808--11512935	46	2.8	45	76	8	116	34	10	10	44	1.73
11513133--11513224	47	2.0	47	84	0	121	34	17	10	36	1.85
11514614--11514726	29	3.9	29	74	8	104	50	7	5	37	1.52
11514719--11514765	14	3.4	14	73	5	51	65	0	4	29	1.11
11515302--11515333	13	2.5	13	94	0	55	15	3	6	75	1.14
11524535--11524587	26	2.1	25	82	3	61	49	1	3	45	1.31
11524573--11524616	23	1.9	23	81	9	54	54	0	0	45	0.99
11524603--11524653	12	4.1	13	78	14	54	62	0	0	37	0.95
11524598--11524644	12	3.6	14	83	16	57	61	0	0	38	0.96
11528093--11528192	42	2.4	42	75	9	107	44	5	0	51	1.23
11528250--11528289	21	1.9	21	89	0	62	35	5	0	60	1.19
11528271--11528326	17	3.2	17	85	7	60	23	7	1	67	1.24
11528579--11528664	31	2.8	30	77	16	77	61	1	1	36	1.11
11528569--11528642	9	8.6	9	77	15	59	63	0	1	35	1.03
11528810--11528869	23	2.7	22	85	12	79	58	0	0	41	0.98
11529504--11529547	16	2.5	17	82	10	54	63	2	4	29	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11529598--11529630	15	2.3	15	89	5	50	57	0	12	30	1.35
11530558--11530623	35	1.9	35	90	3	107	51	1	9	37	1.43
11531677--11531747	11	6.2	12	70	12	51	56	0	0	43	0.99
11531692--11531747	18	3.2	18	68	12	53	58	0	0	41	0.98
11532119--11532187	27	2.5	28	76	19	81	47	0	0	52	1.00
11532155--11532197	22	2.0	22	86	9	61	55	0	0	44	0.99
11532156--11532208	22	2.5	22	75	12	56	54	1	1	41	1.22
11541693--11541723	2	15.5	2	93	0	53	51	3	0	45	1.17
11554212--11554251	3	13.3	3	100	0	80	32	0	0	67	0.91
11556786--11556827	18	2.3	18	87	0	57	2	14	9	73	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127