genome.fa.s656.2.7.7.80.10.50.1000.90.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  90  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16954192--16954233	17	2.5	17	81	14	52	76	0	4	19	0.96
16954422--16954601	85	2.1	87	80	10	201	39	21	13	25	1.90
16954593--16954679	41	2.1	41	84	4	111	39	24	16	20	1.92
16955666--16955704	14	2.7	14	88	4	60	7	12	0	79	0.93
16955655--16955712	27	2.2	25	82	17	66	10	15	0	74	1.08
16958415--16958454	20	2.0	20	100	0	80	40	20	15	25	1.90
16958417--16958463	20	2.3	20	92	0	76	48	14	14	21	1.80
16964946--16965017	37	1.9	37	100	0	144	20	19	13	45	1.84
16966370--16966405	5	6.8	5	87	12	54	80	0	0	19	0.71
16967202--16967339	3	43.3	3	69	22	52	61	0	5	32	1.23
16967217--16967341	22	5.8	22	75	17	129	59	0	5	34	1.27
16967213--16967304	39	2.4	39	82	10	100	60	1	5	32	1.26
16967266--16967330	24	2.6	25	83	14	80	58	1	6	33	1.32
16967202--16967329	61	2.1	60	88	5	186	61	0	5	32	1.24
16967202--16967365	63	2.7	61	83	9	167	64	0	4	31	1.17
16971720--16971751	16	1.9	17	93	6	57	21	6	3	68	1.26
16980958--16980983	2	13.0	2	100	0	52	50	0	0	50	1.00
16981381--16981529	72	2.1	73	80	3	167	40	8	6	44	1.58
16981447--16981696	134	1.9	134	82	7	319	38	8	6	47	1.58
16981564--16981750	71	2.6	72	78	8	179	39	8	5	47	1.57
16981858--16982441	305	1.9	305	85	5	797	29	9	11	49	1.71
16982522--16982559	16	2.2	18	90	9	62	15	0	5	78	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16997337--16997388	17	3.2	15	79	15	59	26	5	0	67	1.13
16999723--16999763	9	4.3	9	82	11	55	4	9	2	82	0.89
17000614--17000657	21	2.1	21	95	0	79	4	11	4	79	1.02
17005837--17005890	26	2.1	26	100	0	108	38	11	22	27	1.88
17013891--17013934	21	2.1	21	87	8	63	34	4	2	59	1.30
17014408--17014445	20	1.9	19	89	5	58	34	10	15	39	1.82
17015261--17015313	18	3.1	16	79	15	52	5	1	11	81	0.94
17015339--17015396	29	2.0	29	100	0	116	44	13	13	27	1.82
17015373--17015520	46	3.2	45	79	4	163	36	18	12	32	1.88
17016892--17016932	19	2.1	20	86	4	57	2	9	4	82	0.89
17016941--17016975	17	2.1	17	88	0	52	2	20	2	74	1.08
17041734--17041773	18	2.3	17	86	4	53	2	15	2	80	0.93
17042124--17042148	13	1.9	13	100	0	50	24	0	0	76	0.80
17042246--17042293	11	4.6	10	77	10	51	4	14	0	81	0.84
17044295--17044337	20	2.2	20	91	0	68	72	9	0	18	1.11
17045064--17045109	21	2.1	22	92	4	76	26	15	19	39	1.91
17045099--17045141	22	2.0	22	90	0	68	25	20	13	39	1.90
17047485--17047660	87	2.0	87	96	0	325	32	14	19	32	1.92
17049320--17049545	116	1.9	116	95	0	407	35	23	13	27	1.92
17058610--17058664	20	2.8	20	83	5	67	32	9	10	47	1.70
17058613--17058676	20	3.2	19	73	4	56	34	10	12	42	1.78
17069248--17069320	25	2.9	25	79	6	85	52	6	9	31	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17069381--17069451	21	3.2	21	90	6	97	16	12	0	70	1.17
17069390--17069451	7	8.7	7	94	1	97	17	12	0	69	1.19
17069511--17069548	17	2.2	17	90	0	58	28	10	0	60	1.30
17069508--17069551	17	2.4	19	77	14	56	29	9	0	61	1.27
17070622--17070694	13	5.2	14	74	12	60	20	1	31	46	1.59
17070561--17070694	13	10.1	13	68	18	53	23	2	28	45	1.65
17070621--17070694	21	3.5	21	83	5	105	21	1	31	45	1.60
17070622--17070694	7	10.4	7	77	5	67	20	1	31	46	1.59
17074245--17074277	15	2.3	15	89	5	50	51	3	0	45	1.16
17075805--17075863	13	4.5	13	76	0	55	18	10	22	49	1.77
17076055--17076096	21	2.0	21	85	0	57	28	4	0	66	1.12
17076212--17076273	3	21.3	3	75	15	51	25	1	3	69	1.13
17076207--17076251	13	3.4	13	84	9	56	22	0	4	73	1.01
17077784--17077817	13	2.6	13	80	0	50	23	5	0	70	1.09
17077854--17077916	6	10.5	6	91	0	63	33	20	0	46	1.51
17077855--17077901	3	15.7	3	90	0	76	34	27	0	38	1.57
17085177--17085232	22	2.4	24	77	14	64	64	14	1	19	1.38
17085929--17085966	20	1.9	20	88	0	58	44	7	15	31	1.75
17088969--17089020	27	1.9	27	88	0	77	38	13	9	38	1.77
17089044--17089164	63	1.9	63	88	3	181	37	9	10	42	1.73
17090234--17090267	17	2.0	17	88	0	50	44	26	5	23	1.76
17095978--17097125	483	2.4	480	80	5	1249	33	9	15	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17095887--17097121	161	7.7	161	77	5	1056	33	9	15	40	1.80
17103777--17103816	13	3.2	13	85	3	55	27	0	10	62	1.27
17104869--17104931	28	2.2	28	75	13	67	14	9	0	76	1.02
17105846--17105889	21	2.1	21	86	0	61	22	0	2	75	0.92
17110626--17110665	11	3.6	11	82	0	53	85	2	5	7	0.83
17110624--17110665	23	1.9	21	90	9	66	83	4	4	7	0.91
17112186--17112335	35	4.6	34	72	19	124	35	12	12	40	1.80
17112209--17112258	24	2.1	24	92	0	82	42	14	10	34	1.78
17112816--17112935	62	1.9	62	87	0	177	22	13	20	43	1.87
17113011--17113142	42	3.2	41	82	9	153	26	9	24	39	1.86
17113467--17113689	50	4.5	50	73	16	169	30	11	15	42	1.82
17113498--17113686	49	3.8	48	79	11	184	30	11	15	42	1.81
17113450--17113689	102	2.4	99	84	6	306	31	11	15	42	1.82
17113811--17113855	14	3.3	14	85	14	51	17	2	0	80	0.82
17113838--17113866	12	2.4	12	100	0	58	6	6	0	86	0.72
17114963--17114987	10	2.5	10	100	0	50	84	0	8	8	0.79
17117783--17117814	16	2.1	16	94	5	57	12	25	6	56	1.59
17117894--17117919	12	2.2	12	100	0	52	23	0	34	42	1.54
17120630--17121006	145	2.6	144	84	1	450	31	15	11	41	1.83
17120673--17121006	144	2.3	145	85	0	445	32	15	11	41	1.82
17122017--17122106	45	2.0	45	95	0	162	30	5	17	46	1.71
17130841--17130878	14	2.8	14	88	11	53	10	10	10	68	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17133117--17133180	31	2.1	31	100	0	128	35	3	6	54	1.41
17135715--17135756	13	3.3	13	80	6	50	73	0	16	9	1.08
17141904--17141934	15	2.1	15	93	0	53	16	3	0	80	0.83
17142021--17142094	13	5.4	14	73	11	55	72	5	2	18	1.15
17142038--17142096	21	2.9	21	78	9	61	74	5	1	18	1.09
17142806--17142997	9	20.8	9	86	6	242	63	1	4	30	1.22
17142805--17142864	12	4.8	13	88	12	51	71	0	0	28	0.86
17142827--17142997	3	56.3	3	90	2	243	61	1	4	31	1.26
17147254--17147301	14	2.9	18	64	23	50	22	6	18	52	1.68
17149454--17149496	19	2.3	19	88	8	61	23	2	0	74	0.93
17149490--17149514	11	2.3	11	100	0	50	36	8	0	56	1.29
17149452--17149507	19	3.1	18	73	14	53	25	3	0	71	1.02
17150439--17150828	205	1.9	205	80	5	457	33	15	7	43	1.76
17152250--17152580	44	7.2	44	79	13	238	38	22	13	25	1.91
17152261--17152785	48	11.0	48	82	11	580	37	23	13	26	1.91
17152299--17152776	98	4.9	96	88	6	632	37	23	13	25	1.92
17160596--17160628	15	2.3	15	89	5	50	3	0	9	87	0.63
17160594--17160648	20	2.7	21	75	13	53	5	0	12	81	0.84
17161890--17162289	208	1.9	210	80	7	474	32	14	7	46	1.71
17163005--17163051	25	1.9	25	82	4	60	17	12	8	61	1.55
17163450--17163494	20	2.2	20	88	0	63	6	4	6	82	0.95
17163449--17163494	18	2.4	20	82	7	60	8	4	6	80	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17166813--17166895	24	3.2	25	81	8	105	73	1	4	20	1.08
17167695--17167793	3	34.3	3	78	15	111	59	1	4	35	1.23
17168063--17168230	56	3.0	56	76	5	178	36	14	26	22	1.93
17168214--17168518	120	2.5	120	81	3	317	44	16	22	16	1.86
17168328--17168681	175	2.0	176	85	1	469	45	16	21	16	1.85
17169330--17169628	56	5.4	55	78	7	293	11	17	12	57	1.64
17169331--17169630	110	2.7	109	83	5	352	12	17	12	57	1.65
17173798--17173847	19	2.5	20	90	9	77	70	2	6	22	1.20
17173798--17173858	19	3.2	19	84	9	70	73	1	4	19	1.10
17173815--17173858	10	4.3	10	82	5	52	77	0	4	18	0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127