genome.fa.s656.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  57  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11176450--11176488	17	2.2	18	86	4	53	20	2	2	74	1.06
11176478--11176574	31	3.2	32	75	12	87	22	9	3	64	1.36
11177440--11177514	9	7.5	10	79	13	50	13	4	1	81	0.90
11177439--11177529	18	5.2	17	81	12	78	14	4	1	80	0.93
11177451--11177522	27	2.6	28	79	16	87	13	2	1	81	0.86
11177537--11177712	59	3.0	58	79	8	185	46	7	11	34	1.68
11181606--11181678	7	10.1	7	74	14	51	82	0	15	2	0.79
11181608--11181671	9	7.2	9	82	12	62	82	0	15	1	0.74
11181599--11181681	22	3.7	22	77	6	69	80	0	15	3	0.84
11181608--11181653	8	5.5	8	82	17	58	89	0	10	0	0.50
11181615--11181654	1	40.0	1	84	0	53	92	0	7	0	0.38
11181615--11181653	18	2.2	18	95	4	71	92	0	7	0	0.39
11182888--11183113	41	5.5	41	92	4	359	23	17	23	36	1.94
11187633--11187805	41	4.2	42	89	3	269	24	16	23	35	1.95
11187633--11187805	83	2.1	83	92	2	285	24	16	23	35	1.95
11187812--11187848	16	2.2	16	90	4	56	86	13	0	0	0.57
11188118--11188166	15	3.2	16	83	16	52	34	0	4	61	1.15
11188118--11188169	17	3.2	17	82	17	58	34	0	3	61	1.14
11188151--11188183	3	11.3	3	87	6	50	30	0	0	69	0.88
11188120--11188180	23	2.9	21	81	13	63	32	0	3	63	1.10
11188129--11188177	14	3.4	14	81	18	57	34	0	2	63	1.06
11188127--11188178	17	2.9	16	83	16	59	34	0	1	63	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11188143--11188212	17	3.9	18	75	18	56	27	1	1	70	1.05
11188129--11188212	23	3.8	21	76	16	64	28	1	2	67	1.10
11188202--11188297	29	3.2	31	76	16	80	25	8	3	63	1.37
11188574--11188622	26	1.9	26	91	4	82	40	2	14	42	1.57
11189234--11189322	17	5.0	16	76	16	70	13	5	1	79	0.96
11189144--11189307	28	5.7	26	69	20	89	15	3	4	77	1.05
11189325--11189440	58	2.0	60	86	8	166	49	6	11	32	1.65
11192057--11192103	20	2.4	19	86	10	60	55	4	4	36	1.39
11192273--11192321	17	2.7	18	81	15	57	71	8	0	20	1.11
11192272--11192321	19	2.7	19	79	17	61	70	8	0	22	1.13
11192501--11192619	8	14.0	8	73	15	78	35	0	3	61	1.13
11192500--11192616	9	13.6	9	70	13	68	33	0	3	63	1.11
11192508--11192619	17	6.5	17	70	20	72	36	0	2	60	1.11
11192528--11192619	33	2.8	34	78	8	100	35	0	3	60	1.13
11192484--11192620	9	14.7	9	68	15	64	36	0	3	59	1.15
11192607--11192631	13	1.9	13	100	0	50	60	0	0	40	0.97
11203611--11203663	21	2.5	22	78	6	72	79	7	5	7	1.06
11203701--11203758	29	2.0	28	80	9	64	50	3	3	43	1.36
11204986--11205041	26	2.1	27	86	3	78	39	3	16	41	1.65
11205432--11205459	14	2.0	14	100	0	56	42	7	7	42	1.59
11205661--11205856	95	2.1	95	98	0	374	35	7	16	40	1.76
11206549--11206605	26	2.2	26	84	6	71	47	0	12	40	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11206872--11206905	15	2.2	15	89	5	50	79	5	5	8	1.05
11207435--11207506	28	2.6	28	84	4	92	29	16	13	40	1.87
11207579--11207642	26	2.6	25	92	5	103	78	6	0	15	0.95
11207571--11207623	8	6.5	8	79	12	54	75	5	0	18	0.99
11207579--11207631	8	6.5	8	79	12	54	75	7	0	16	1.02
11207570--11207623	15	3.2	19	78	19	57	75	5	0	18	0.98
11207570--11207640	33	2.2	33	87	5	99	78	5	0	15	0.92
11208773--11208800	12	2.3	12	100	0	56	82	0	0	17	0.68
11208987--11209036	21	2.4	22	80	12	70	72	0	0	28	0.86
11220815--11221095	50	5.9	50	75	11	239	29	11	19	38	1.87
11220833--11220996	89	1.8	89	89	0	256	28	13	21	37	1.91
11220926--11221095	49	3.4	49	80	2	153	31	11	17	40	1.85
11221350--11221419	28	2.5	28	83	0	95	22	25	15	35	1.94
11221430--11221636	103	2.0	102	94	0	360	33	14	11	40	1.83
11221615--11221673	13	4.5	13	89	10	77	84	6	1	6	0.83
11221640--11221674	1	35.0	1	88	0	52	94	2	0	2	0.37
11221615--11221671	22	2.6	22	80	0	69	84	7	1	7	0.85
11224155--11224193	18	2.2	18	90	9	62	46	10	5	38	1.60
11224341--11224372	2	16.0	2	100	0	64	50	0	0	50	1.00
11225218--11225268	10	4.6	11	75	15	52	70	3	0	25	1.04
11225218--11225268	22	2.3	21	80	9	66	70	3	0	25	1.04
11225218--11225267	12	4.5	12	78	14	54	70	4	0	26	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11228826--11228877	20	2.7	19	83	13	70	55	0	0	44	0.99
11228829--11228874	21	2.2	21	92	3	76	54	0	0	45	0.99
11228819--11228862	20	2.0	23	83	16	58	52	0	0	47	1.00
11229044--11229084	2	20.5	2	94	0	73	46	0	2	51	1.14
11230359--11230409	13	4.2	12	80	9	52	58	0	1	39	1.09
11234877--11234908	2	16.0	2	100	0	64	50	0	0	50	1.00
11234908--11234945	2	19.0	2	100	0	76	50	0	50	0	1.00
11240476--11240516	19	2.2	19	86	0	55	63	2	2	31	1.20
11240931--11241018	34	2.6	34	83	1	106	53	10	12	23	1.69
11241121--11241231	32	3.4	33	76	3	100	51	9	18	19	1.74
11241162--11241354	98	2.0	98	81	8	232	50	11	18	19	1.76
11241515--11241734	59	3.7	58	81	3	235	46	12	20	21	1.83
11241506--11241734	118	1.9	118	84	3	300	45	13	20	20	1.84
11241611--11241706	27	3.4	26	73	17	77	46	14	20	17	1.83
11243132--11243195	28	2.2	29	86	5	85	50	25	3	21	1.64
11243918--11244365	188	2.4	188	82	4	528	40	13	11	34	1.80
11244383--11244639	124	2.1	124	86	2	356	41	8	14	36	1.76
11243890--11244823	187	5.0	186	73	11	693	41	11	12	35	1.79
11244688--11244885	62	3.2	60	69	11	166	42	9	14	32	1.78
11244639--11244929	124	2.3	124	80	6	288	41	11	12	35	1.78
11244719--11244924	62	3.3	61	70	8	164	41	10	13	34	1.79
11244383--11245011	311	2.0	310	87	4	901	41	10	12	35	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11244691--11244942	124	2.0	124	87	3	364	40	10	13	35	1.79
11244906--11245145	125	1.9	129	88	3	371	40	12	9	38	1.74
11252968--11253055	34	2.6	34	87	0	122	36	15	15	31	1.90
11252968--11253070	34	3.0	33	73	8	91	35	14	16	33	1.89
11267606--11267639	8	4.2	8	100	0	68	35	23	0	41	1.55
11270291--11271210	234	4.0	232	87	7	1279	38	12	8	40	1.74
11270291--11271180	235	3.9	234	87	6	1224	38	12	8	40	1.73
11276335--11276373	19	2.0	20	90	10	62	56	2	0	41	1.13
11277454--11277525	19	3.7	19	77	17	67	59	8	2	29	1.40
11277564--11277605	17	2.3	18	80	12	50	73	4	4	16	1.17
11277570--11277662	37	2.5	37	82	5	98	68	9	4	17	1.33
11277589--11277663	37	2.0	36	87	7	105	65	9	4	21	1.38
11277796--11277850	18	3.0	19	76	5	60	60	12	0	27	1.33
11277915--11277951	18	2.0	19	89	5	58	62	0	8	29	1.24
11277921--11277976	25	2.2	25	78	6	60	67	3	3	25	1.22
11278083--11278129	18	2.6	18	79	3	58	25	2	0	72	0.96
11278311--11278391	36	2.2	37	86	6	112	27	2	4	65	1.26
11278570--11278607	17	2.2	18	85	4	51	28	2	7	60	1.38
11279094--11279142	10	5.1	10	79	18	50	34	2	10	53	1.47
11279108--11279144	17	2.1	18	90	5	58	24	2	10	62	1.41
11279593--11279646	22	2.5	22	87	0	72	38	9	1	50	1.45
11279708--11279760	22	2.4	22	80	0	61	33	7	9	49	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11279842--11279894	22	2.4	22	87	0	70	41	7	3	47	1.50
11279856--11279919	22	2.9	22	83	0	65	35	4	9	50	1.56
11280032--11280136	22	4.8	22	74	14	92	38	11	3	46	1.58
11280032--11280136	43	2.4	44	87	3	140	38	11	3	46	1.58
11280081--11280145	22	3.0	21	78	17	69	41	10	3	44	1.55
11280305--11280385	22	3.7	21	78	3	72	35	12	7	44	1.70
11280252--11280383	44	3.0	44	82	7	126	37	8	7	46	1.62
11280580--11280712	22	6.0	22	71	6	81	36	6	7	49	1.58
11280575--11280658	44	1.9	44	82	4	107	34	4	9	51	1.56
11280717--11280765	21	2.3	21	78	3	53	38	10	8	42	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127