genome.fa.s656.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  11  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2565519--2565574	27	2.1	27	80	12	62	26	3	23	46	1.68
2567432--2567459	1	28.0	1	100	0	56	100	0	0	0	0.00
2571593--2571618	2	13.0	2	100	0	52	50	0	50	0	1.00
2582431--2582479	19	2.6	19	87	3	64	18	22	20	38	1.93
2583078--2583349	114	2.3	113	80	15	280	47	6	10	35	1.65
2585701--2585730	15	2.0	15	93	0	51	13	10	0	76	1.01
2587612--2587696	44	2.0	43	86	6	118	32	3	18	44	1.67
2588798--2588869	36	2.0	36	89	5	110	38	13	8	38	1.75
2589865--2589927	24	2.7	23	78	7	72	14	47	19	19	1.82
2590660--2590710	24	2.2	23	82	3	57	52	0	0	47	1.00
2590699--2590752	14	3.9	14	76	7	56	53	0	0	46	1.00
2591194--2591237	23	1.9	23	90	0	70	45	0	0	54	0.99
2591484--2591524	3	13.7	3	100	0	82	31	0	0	68	0.90
2592257--2592300	3	14.7	3	86	9	63	29	2	2	65	1.16
2598763--2598834	34	2.1	34	84	0	90	23	20	9	45	1.81
2599260--2599293	11	3.2	10	88	12	50	17	8	29	44	1.79
2599846--2599883	19	2.1	18	85	9	51	21	5	18	55	1.62
2601221--2601266	21	2.1	22	84	4	58	58	0	2	39	1.10
2602085--2602143	25	2.4	25	79	0	64	42	1	1	54	1.20
2602425--2602504	40	2.0	40	85	4	108	46	25	6	22	1.75
2602517--2602541	2	12.5	2	100	0	50	48	0	0	52	1.00
2602988--2603038	24	2.1	24	85	3	66	54	0	7	37	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2604021--2604112	30	3.1	29	80	6	96	45	5	1	47	1.32
2611573--2611597	13	1.9	13	100	0	50	48	0	0	52	1.00
2612995--2613798	408	2.0	407	91	1	1297	26	25	14	33	1.94
2614436--2614493	29	2.0	29	83	9	75	36	3	3	56	1.33
2616828--2616869	18	2.3	19	84	8	52	52	2	7	38	1.42
2619016--2619400	58	6.6	57	81	8	445	36	10	7	45	1.66
2619016--2619400	117	3.3	116	84	7	519	36	10	7	45	1.66
2619398--2619484	5	17.2	5	74	17	56	75	1	4	18	1.03
2619442--2619488	17	2.8	17	83	3	60	78	0	6	14	0.93
2619417--2619490	22	3.5	20	77	13	76	77	0	4	18	0.93
2620327--2620403	21	3.6	21	75	16	77	71	6	5	16	1.26
2620491--2620570	6	13.7	6	75	17	71	77	0	2	20	0.88
2620475--2620558	27	3.1	27	77	20	86	72	1	4	21	1.10
2620490--2620569	5	15.0	5	73	21	65	76	0	2	21	0.91
2620491--2620570	11	7.4	11	78	10	85	77	0	2	20	0.88
2620493--2620570	21	3.7	20	80	16	86	76	0	2	20	0.90
2620774--2621080	41	7.4	41	88	5	422	38	21	15	24	1.93
2620774--2621080	124	2.5	123	88	4	456	38	21	15	24	1.93
2621658--2621990	167	2.0	167	98	1	641	29	23	6	39	1.80
2622505--2622539	13	2.5	15	90	9	56	5	11	0	82	0.82
2623353--2623385	13	2.6	13	95	4	59	60	9	6	24	1.49
2629945--2630007	24	2.7	23	78	7	72	14	47	19	19	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2630747--2630790	14	3.7	12	88	11	56	45	0	0	54	0.99
2630756--2630803	14	3.5	14	88	8	64	50	0	0	50	1.00
2630747--2630792	12	3.8	12	78	15	51	47	0	0	52	1.00
2630799--2630854	29	1.9	29	89	7	87	50	1	0	48	1.11
2632314--2632350	12	2.9	13	88	11	51	27	0	2	70	1.01
2632349--2632374	3	8.7	3	100	0	52	0	0	30	69	0.89
2638357--2638409	14	4.0	13	75	20	56	58	0	0	41	0.98
2641321--2641349	12	2.4	12	100	0	58	24	48	6	20	1.74
2642076--2642126	24	2.2	23	82	3	57	52	0	0	47	1.00
2642115--2642168	14	3.9	14	76	7	56	51	1	0	46	1.11
2642101--2642164	29	2.2	29	83	8	78	51	1	0	46	1.10
2642229--2642270	13	3.1	13	80	19	50	33	0	0	66	0.92
2642610--2642654	13	3.8	13	75	19	53	46	0	0	53	1.00
2642607--2642663	23	2.6	23	78	10	57	52	0	0	47	1.00
2642901--2642932	3	10.7	3	100	0	64	31	0	0	68	0.90
2643669--2643739	3	23.7	3	94	5	126	30	0	1	67	0.99
2644289--2644624	165	2.0	166	87	1	487	30	16	15	37	1.90
2650196--2650267	34	2.1	34	84	0	90	23	20	9	45	1.81
2650690--2650723	11	3.2	10	88	12	50	17	8	29	44	1.79
2651159--2651189	9	3.3	9	95	4	53	9	0	19	70	1.14
2651280--2651317	19	2.1	18	85	9	51	21	5	18	55	1.62
2652600--2652636	12	3.0	12	88	7	56	59	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2653578--2653636	25	2.4	25	79	0	64	42	1	1	54	1.20
2653917--2653996	40	2.0	40	85	4	108	46	25	6	22	1.75
2654009--2654033	2	12.5	2	100	0	50	48	0	0	52	1.00
2654479--2654529	24	2.1	24	85	3	66	54	0	7	37	1.29
2658618--2658653	12	3.0	12	100	0	72	50	16	0	33	1.46
2659564--2659602	19	2.0	20	90	5	62	51	0	0	48	1.00
2659908--2659943	19	2.0	18	89	10	56	66	0	5	27	1.13
2663075--2663099	13	1.9	13	100	0	50	48	0	0	52	1.00
2664495--2665297	407	2.0	407	90	1	1288	26	25	14	33	1.94
2668312--2668353	18	2.3	19	84	8	52	52	2	7	38	1.42
2670510--2670779	60	4.6	59	84	7	343	35	9	6	48	1.62
2670510--2670779	118	2.3	118	89	5	404	35	9	6	48	1.62
2670777--2670859	5	16.2	5	73	18	64	75	1	4	18	1.04
2670797--2670876	22	3.9	20	76	16	67	73	1	3	21	1.06
2670784--2670852	34	2.0	34	83	13	88	76	0	5	17	0.97
2670796--2670874	19	3.9	21	75	20	78	75	0	3	20	0.95
2671707--2671752	24	2.0	23	82	4	56	76	6	4	13	1.14
2671852--2671965	6	19.7	6	77	16	116	79	0	2	16	0.89
2671851--2671965	27	4.6	25	77	17	107	79	0	2	17	0.90
2671851--2671965	49	2.3	50	88	7	173	79	0	2	17	0.90
2671858--2671965	22	5.0	22	81	9	107	79	0	2	16	0.90
2672173--2672370	41	4.8	41	88	3	254	38	22	15	24	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2672173--2672370	83	2.4	82	85	2	261	38	22	15	24	1.92
2672310--2672431	61	2.0	61	98	0	235	41	22	12	22	1.87
2672371--2672587	41	5.3	41	93	1	371	37	23	15	23	1.93
2672231--2672514	144	2.0	144	92	1	480	37	23	15	22	1.93
2672192--2672555	185	2.0	185	93	1	631	37	23	15	23	1.93
2672371--2672587	83	2.6	82	94	0	380	37	23	15	23	1.93
2673283--2673336	24	2.2	23	81	18	65	25	5	3	64	1.32
2673387--2673412	3	8.7	3	100	0	52	30	0	0	69	0.89
2673985--2674027	20	2.2	20	95	0	77	34	32	25	6	1.83
2674046--2674090	20	2.2	20	84	0	54	33	28	22	15	1.95
2686727--2686775	3	16.3	3	95	0	89	63	0	36	0	0.95
2692618--2692655	2	20.0	2	89	10	62	50	0	0	50	1.00
2692618--2692653	15	2.4	15	95	0	63	50	0	0	50	1.00
2692618--2692655	17	2.2	17	95	0	67	50	0	0	50	1.00
2697222--2697267	23	2.0	23	84	16	60	54	2	0	43	1.12
2700512--2700559	23	2.1	23	100	0	96	31	16	8	43	1.78
2714445--2714490	24	1.9	24	86	0	65	17	8	2	71	1.21
2714444--2714502	24	2.4	23	81	10	64	18	8	1	71	1.20
2715772--2715976	60	3.4	62	80	7	242	45	6	11	36	1.65
2719842--2719895	25	2.2	24	84	15	67	79	0	11	9	0.93
2719865--2719929	19	3.4	19	72	25	57	80	0	13	6	0.90
2719863--2719921	30	2.0	30	83	6	75	81	0	13	5	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2719863--2719931	7	9.7	7	72	12	52	79	0	14	5	0.90
2719862--2719931	11	6.2	11	73	18	54	78	0	15	5	0.93
2721241--2721322	43	1.9	42	87	7	121	36	10	17	35	1.85
2721616--2721866	41	6.2	40	84	8	294	25	16	21	36	1.94
2721615--2721842	81	2.8	82	87	6	313	26	16	19	37	1.93
2721949--2722002	10	5.7	10	87	10	62	85	11	0	3	0.73
2721936--2722002	14	4.6	14	77	7	71	85	8	2	2	0.81
2722200--2722277	24	3.3	23	72	15	70	26	6	0	66	1.15
2722235--2722280	24	2.0	24	91	4	76	19	8	0	71	1.11
2723608--2723880	62	4.5	59	80	8	295	45	5	12	36	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127