genome.fa.s656.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  56  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11037454--11037488	18	1.9	18	88	0	52	80	0	14	5	0.89
11038746--11038779	17	2.0	17	100	0	68	23	11	0	64	1.26
11038751--11038788	17	2.2	17	90	0	58	26	7	0	65	1.19
11038807--11038848	13	3.3	13	86	3	59	85	2	2	9	0.77
11039486--11039511	12	2.2	12	100	0	52	65	0	0	34	0.93
11043014--11043044	11	2.8	11	95	0	53	38	22	19	19	1.93
11043548--11043626	29	2.7	28	81	11	79	63	2	1	32	1.16
11057446--11057884	59	7.5	58	86	5	580	35	12	7	44	1.71
11057446--11057900	177	2.6	175	87	5	666	35	11	7	45	1.70
11057684--11057774	27	3.1	27	66	21	67	38	13	7	40	1.73
11057914--11057974	17	3.6	17	80	10	63	78	3	4	13	1.03
11057914--11057973	11	5.4	11	78	11	52	78	3	5	13	1.04
11057997--11058028	4	7.8	4	93	6	55	75	0	0	25	0.81
11058547--11058596	25	2.1	23	85	7	64	52	18	2	28	1.56
11059058--11059127	5	13.4	5	75	19	63	74	2	1	21	1.03
11059058--11059127	16	4.4	16	79	15	67	74	2	1	21	1.03
11059096--11059144	21	2.3	21	82	6	55	75	2	6	16	1.09
11059336--11059633	41	7.1	42	87	3	361	36	22	17	23	1.95
11059359--11059633	124	2.2	125	87	1	381	37	22	16	24	1.93
11059411--11059632	83	2.7	83	90	1	349	37	22	16	22	1.93
11060648--11060688	8	5.4	8	80	11	50	9	9	0	80	0.91
11068991--11069387	58	6.7	58	85	7	532	35	11	6	46	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11069421--11069488	6	11.7	6	84	6	95	80	1	2	14	0.89
11069403--11069488	17	4.9	17	79	12	86	79	2	3	15	0.98
11069421--11069488	23	2.9	23	86	2	100	80	1	2	14	0.89
11069398--11069540	12	11.3	12	72	18	55	74	3	3	18	1.11
11070558--11070588	6	5.2	6	96	0	53	80	0	0	19	0.71
11070517--11070583	36	1.9	34	82	11	82	79	0	4	16	0.90
11071281--11071542	129	2.0	129	84	2	339	42	11	13	32	1.80
11071499--11071667	49	3.1	58	66	23	137	50	11	9	28	1.69
11071503--11071744	107	2.3	105	84	5	317	48	10	11	30	1.72
11071643--11071732	46	1.9	48	84	8	123	51	7	11	30	1.65
11071959--11072204	61	3.9	63	77	14	256	36	13	13	36	1.84
11071963--11072276	122	2.5	127	80	9	322	36	14	12	35	1.85
11072617--11072657	20	2.0	20	90	0	64	43	9	21	24	1.83
11076236--11076758	158	3.4	156	79	6	472	33	8	17	41	1.79
11077705--11077746	22	1.9	22	95	0	75	40	19	21	19	1.92
11077791--11077839	11	4.5	11	77	10	55	38	8	18	34	1.80
11077798--11077873	22	3.5	22	76	3	64	35	11	18	34	1.87
11079413--11079462	19	2.6	19	77	3	55	4	10	6	80	1.02
11081905--11081947	19	2.3	19	84	15	54	48	0	0	51	1.00
11082345--11082385	16	2.5	17	76	11	50	34	0	2	63	1.08
11082827--11082861	12	2.8	12	91	4	52	48	5	0	45	1.26
11082853--11082907	23	2.3	25	84	6	69	29	3	9	58	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11083020--11083050	3	10.3	3	100	0	62	67	0	0	32	0.91
11083663--11083691	10	2.7	11	94	5	51	68	0	3	27	1.05
11083698--11083749	18	2.9	17	77	8	59	50	3	1	44	1.31
11085183--11085213	4	7.8	4	100	0	62	51	22	0	25	1.48
11088238--11088313	30	2.5	30	85	4	91	40	1	15	42	1.56
11088258--11088332	30	2.5	30	80	4	80	44	2	14	38	1.60
11106175--11106211	13	2.6	15	87	8	51	2	48	0	48	1.15
11109875--11109906	11	2.6	13	90	9	50	0	40	0	59	0.97
11110029--11110092	32	2.0	32	96	0	119	45	15	17	21	1.85
11114266--11114315	26	2.0	25	92	4	82	66	2	0	32	1.03
11114274--11114322	18	2.8	17	78	9	53	63	2	0	34	1.06
11114371--11114412	15	2.9	15	82	13	52	50	0	2	47	1.14
11114400--11114474	10	7.6	10	76	7	73	61	2	1	34	1.18
11114405--11114474	19	3.6	19	77	9	79	61	2	1	34	1.20
11114401--11114474	29	2.5	29	88	2	103	62	2	1	33	1.18
11114403--11114495	29	3.2	29	84	4	89	58	4	3	34	1.34
11115133--11115164	16	1.9	17	93	6	57	43	0	0	56	0.99
11116471--11116549	37	2.1	38	95	2	142	41	17	2	37	1.63
11117036--11117101	29	2.2	31	84	10	84	50	0	3	46	1.16
11117085--11117126	21	2.0	20	86	4	57	52	0	2	45	1.13
11117003--11117213	81	2.5	83	76	13	184	46	2	2	48	1.27
11117071--11117236	39	4.0	39	72	15	97	50	2	1	45	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11119467--11119521	17	3.3	17	75	12	51	76	5	0	18	0.97
11119657--11119713	26	2.3	25	88	8	82	42	0	8	49	1.34
11119707--11119748	15	2.8	15	77	0	57	47	0	0	52	1.00
11119655--11119743	6	15.7	6	76	17	57	41	0	5	52	1.25
11119821--11119882	22	2.6	24	80	14	67	50	1	0	48	1.10
11119871--11119925	18	2.9	18	75	19	58	60	3	0	36	1.15
11119872--11119936	21	3.2	20	79	14	71	58	3	0	38	1.14
11119905--11119982	32	2.4	30	78	14	84	53	1	0	44	1.08
11121060--11121095	19	1.9	19	94	5	65	33	0	2	63	1.08
11123254--11123425	42	4.1	42	87	2	211	45	19	11	23	1.82
11123308--11123684	42	9.1	40	82	8	274	39	21	13	25	1.90
11123392--11123684	41	7.2	40	85	5	336	37	21	13	26	1.92
11123416--11123684	123	2.2	124	87	2	391	37	21	13	27	1.91
11123983--11124064	43	1.9	42	90	7	130	35	15	10	37	1.83
11125457--11125512	28	1.9	29	85	7	78	7	17	0	75	1.03
11130893--11130949	18	3.1	18	74	16	55	66	10	7	15	1.42
11131203--11131239	17	2.4	16	86	13	51	2	10	2	83	0.84
11146733--11146771	20	2.0	20	94	0	69	12	5	2	79	1.00
11153098--11153136	20	2.1	19	90	9	62	74	0	5	20	1.01
11153195--11153251	29	1.9	30	86	10	82	43	0	8	47	1.34
11155167--11155202	18	1.9	18	88	5	54	19	5	0	75	1.00
11155577--11155619	20	2.2	20	87	8	61	69	0	6	23	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11156418--11156459	14	2.9	14	83	16	50	42	0	2	54	1.13
11157022--11157048	7	3.9	7	100	0	54	11	0	0	88	0.50
11157306--11157353	24	2.0	24	84	11	64	45	6	14	33	1.70
11157474--11157554	26	2.8	26	73	25	74	18	0	32	49	1.48
11157469--11157527	19	3.2	20	79	9	63	13	0	35	50	1.42
11157484--11157569	33	2.6	34	85	8	117	20	0	30	48	1.50
11157517--11157580	33	1.9	33	84	6	85	23	0	25	51	1.48
11158862--11159282	143	3.0	141	77	5	382	42	11	12	33	1.79
11161571--11161616	18	2.5	19	76	16	51	71	2	2	23	1.08
11161595--11161661	35	1.9	35	84	6	91	74	2	4	17	1.11
11164473--11164500	2	14.0	2	100	0	56	50	0	0	50	1.00
11164442--11164792	185	1.9	186	95	4	632	33	11	12	41	1.80
11166493--11166543	19	2.8	18	76	5	57	64	0	1	33	1.05
11166711--11166793	36	2.3	35	81	8	96	53	0	3	43	1.18
11166711--11166800	26	3.4	27	75	9	78	54	0	3	42	1.17
11166866--11166903	20	1.9	19	89	5	58	39	2	0	57	1.12
11167068--11167101	17	2.1	16	94	5	59	32	0	2	64	1.08
11169592--11169616	13	1.9	13	100	0	50	88	4	8	0	0.64
11170211--11170268	24	2.4	24	79	0	71	70	12	5	12	1.31
11170243--11170281	20	2.0	20	84	0	51	58	12	7	20	1.58
11171083--11171120	13	2.9	13	85	11	51	68	0	2	28	1.03
11174311--11174432	34	3.7	33	80	14	126	37	0	6	54	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11174327--11174520	5	37.2	5	73	14	119	36	4	4	55	1.38
11174368--11174528	3	58.0	3	69	17	98	35	4	2	57	1.32
11174328--11174520	21	9.0	21	73	12	105	36	4	4	54	1.39
11174865--11174908	22	1.9	23	86	9	63	9	2	34	54	1.44
11175344--11175384	19	2.2	18	91	4	64	12	2	0	85	0.70
11175348--11175426	20	3.9	19	75	18	70	16	3	2	77	1.03
11176406--11176459	3	17.0	3	78	17	56	33	0	1	64	1.04
11176397--11176454	22	2.7	22	84	10	68	34	0	3	62	1.12
11176404--11176450	14	3.2	14	82	17	60	36	0	2	61	1.08
11176397--11176467	36	2.0	36	83	10	92	32	1	2	63	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127