genome.fa.s656.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  3  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
266189--266232	23	2.0	23	86	4	63	38	0	11	50	1.39
266598--266632	18	1.9	18	94	0	61	51	22	0	25	1.48
266602--266655	17	3.2	16	84	10	63	51	24	0	24	1.48
277988--278062	17	4.7	16	73	14	57	77	1	13	8	1.05
279094--279410	73	4.3	73	80	5	318	20	20	13	45	1.85
279256--279381	35	3.6	35	71	12	105	20	21	13	44	1.86
279097--279370	147	1.9	147	83	3	363	20	20	13	44	1.85
279092--279466	73	5.2	71	80	5	249	21	19	13	45	1.84
279655--280291	105	6.1	104	80	10	579	22	19	11	47	1.81
281773--281824	16	3.2	16	76	13	52	19	1	0	78	0.84
281815--281861	22	2.0	24	88	8	71	38	0	8	53	1.32
281821--281884	22	2.8	22	81	11	67	43	1	7	46	1.42
282233--282286	17	3.2	16	87	10	72	51	25	0	22	1.48
286113--286160	25	2.0	25	84	12	64	52	2	33	12	1.51
292065--292385	43	7.5	44	73	12	229	27	14	18	39	1.89
292091--292330	40	5.8	40	75	9	158	27	15	17	39	1.90
292065--292298	40	5.6	42	72	11	142	26	13	18	41	1.88
292065--292379	127	2.5	126	81	6	348	27	14	18	39	1.90
292187--292382	88	2.3	84	77	11	202	26	16	18	38	1.91
292574--292770	4	47.8	4	69	16	84	26	5	2	66	1.23
292580--292778	21	9.0	21	66	24	58	26	5	2	66	1.23
292612--292763	33	4.6	34	78	8	134	29	5	1	63	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
293115--293175	19	3.6	18	67	28	53	18	9	18	54	1.70
293647--293686	21	2.0	21	90	5	64	20	0	0	80	0.72
293699--294033	58	5.8	57	82	6	381	44	5	12	37	1.67
293777--293864	27	3.1	27	66	15	70	45	5	11	37	1.64
293700--294033	57	5.8	57	81	8	365	44	5	12	37	1.67
294079--294113	16	2.2	16	90	5	54	2	14	0	82	0.77
300545--300570	3	8.7	3	100	0	52	65	0	0	34	0.93
306498--306554	28	2.0	28	96	0	105	45	7	24	22	1.77
307609--307637	2	14.5	2	100	0	58	51	0	48	0	1.00
312579--312632	21	2.6	20	77	13	56	46	1	3	48	1.30
319141--319187	2	23.5	2	100	0	94	0	48	0	51	1.00
321953--321991	19	2.1	19	95	0	69	25	5	15	53	1.62
328891--328946	18	2.9	18	75	14	58	32	3	35	28	1.74
331681--331846	86	1.9	86	95	0	296	19	19	19	41	1.91
332823--332871	25	1.9	26	91	4	82	40	10	2	46	1.49
333098--333138	20	2.1	19	90	4	64	60	2	0	36	1.10
334592--334628	2	18.5	2	100	0	74	51	0	48	0	1.00
334771--334820	2	25.5	2	95	4	93	50	0	50	0	1.00
334592--334964	192	1.9	191	98	0	728	43	14	23	19	1.87
352632--352675	20	2.2	20	84	4	54	31	2	4	61	1.28
352707--352749	21	2.0	22	86	4	61	53	0	4	41	1.21
352954--352990	19	1.9	19	89	10	58	27	2	13	56	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
355316--355593	144	1.9	143	82	7	350	39	8	29	21	1.84
355510--355677	80	2.1	81	89	1	257	40	7	35	16	1.76
364263--364293	2	15.5	2	100	0	62	48	0	0	51	1.00
376131--376169	20	2.0	19	90	5	60	48	0	0	51	1.00
384561--384605	2	22.5	2	95	0	81	0	48	0	51	1.00
390078--390112	2	17.5	2	100	0	70	51	0	0	48	1.00
390169--390201	2	16.5	2	93	0	57	0	0	48	51	1.00
393500--393536	2	18.5	2	94	0	65	0	48	2	48	1.15
393709--393739	9	3.4	9	100	0	62	67	9	22	0	1.19
393711--393745	15	2.3	15	90	0	52	68	11	20	0	1.20
396071--396095	12	2.1	12	100	0	50	28	24	24	24	2.00
398529--398679	77	1.9	78	82	4	189	50	14	13	21	1.77
407310--407397	43	2.0	43	93	0	149	35	13	15	35	1.87
409411--409449	18	2.0	21	85	14	57	51	33	2	12	1.54
418210--418259	2	25.0	2	91	0	82	48	2	2	48	1.24
419196--419227	2	16.0	2	100	0	64	50	0	0	50	1.00
420147--420175	8	3.6	8	100	0	58	37	37	24	0	1.56
423082--423112	2	15.5	2	100	0	62	48	0	0	51	1.00
423553--423580	3	9.3	3	100	0	56	67	0	0	32	0.91
426492--426518	2	13.5	2	100	0	54	51	0	0	48	1.00
428180--428228	3	16.3	3	95	0	89	65	0	2	32	1.04
428888--429396	59	8.7	58	80	8	387	36	10	6	47	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
428896--429396	58	8.6	57	79	8	320	36	10	6	46	1.63
428912--429396	117	4.1	115	79	7	451	36	10	6	46	1.64
429236--429328	29	3.2	28	66	19	73	44	9	4	41	1.57
430178--430219	18	2.3	18	88	8	59	4	14	11	69	1.34
431185--431213	3	9.7	3	100	0	58	34	0	31	34	1.58
441037--441091	26	2.1	26	96	0	101	25	14	27	32	1.95
443573--443597	2	12.5	2	100	0	50	52	0	0	48	1.00
445519--445552	2	17.0	2	100	0	68	0	50	0	50	1.00
452631--452682	26	2.0	26	100	0	104	34	26	11	26	1.91
452755--452781	2	13.5	2	100	0	54	51	48	0	0	1.00
452783--452817	4	8.8	4	100	0	70	51	22	0	25	1.48
474572--474617	22	2.0	23	83	4	58	13	19	10	56	1.66
482885--483079	102	1.9	102	83	0	255	35	17	17	29	1.93
492317--492351	2	17.5	2	93	0	61	48	2	0	48	1.16
493841--493908	25	2.7	25	86	8	86	1	36	1	60	1.15
499049--499469	205	2.1	205	97	0	790	37	18	8	36	1.81
502709--502751	2	21.5	2	100	0	86	0	48	0	51	1.00
510896--510939	19	2.3	19	84	7	54	20	34	22	22	1.97
511202--511250	20	2.5	19	84	12	64	12	2	4	81	0.91
511202--511266	32	2.0	32	82	5	78	16	1	7	73	1.13
511330--511784	60	7.7	58	86	9	604	44	8	12	34	1.73
511330--511795	118	4.0	117	89	6	639	44	8	12	34	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
527749--527827	39	2.0	39	100	0	158	49	17	5	27	1.68
537989--538079	45	2.0	45	86	0	128	36	10	10	41	1.76
542995--543194	71	2.9	66	78	7	220	32	20	17	30	1.96
549430--549472	19	2.3	19	79	0	50	23	0	0	76	0.78
561821--561856	6	6.0	6	93	0	54	50	5	0	44	1.25
562297--562330	17	2.0	17	88	0	50	41	0	2	55	1.15
568910--569404	252	2.0	251	86	2	692	23	32	7	37	1.82
571367--571392	7	3.7	7	100	0	52	61	0	0	38	0.96
576486--576548	23	3.0	21	78	15	58	60	9	28	1	1.37
576500--576548	23	2.1	23	88	7	73	65	6	26	2	1.27
590702--590767	34	1.9	34	96	0	123	40	1	18	39	1.60
591358--591407	18	2.6	20	78	15	61	38	0	0	62	0.96
592407--592446	21	1.9	21	84	0	53	35	7	30	27	1.84
597957--598167	104	2.0	106	83	4	266	37	17	20	24	1.94
598596--598624	2	14.5	2	100	0	58	51	0	0	48	1.00
606829--606855	9	3.0	9	100	0	54	11	33	0	55	1.35
608206--608247	22	1.9	22	90	0	66	42	4	2	50	1.36
611595--611629	3	11.7	3	100	0	70	65	0	0	34	0.93
611628--611667	3	13.3	3	100	0	80	32	0	0	67	0.91
622313--622350	2	19.0	2	88	0	58	55	0	0	44	0.99
624612--624684	30	2.5	30	82	4	78	39	6	2	50	1.43
624712--624809	30	3.3	30	87	8	137	42	4	10	42	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
637288--637316	2	14.5	2	100	0	58	51	48	0	0	1.00
638810--638844	2	17.5	2	100	0	70	48	0	0	51	1.00
640950--640997	2	24.0	2	100	0	96	50	0	0	50	1.00
651924--652102	91	2.0	91	89	0	277	36	10	13	39	1.79
663709--663748	15	2.7	15	88	3	55	57	0	2	40	1.12
664076--664121	13	3.5	13	85	5	65	45	6	0	47	1.28
664851--664880	4	7.5	4	100	0	60	50	23	0	26	1.50
668127--668290	81	2.0	81	96	0	301	38	20	11	29	1.88
668548--668744	107	1.8	109	94	2	353	50	22	6	20	1.71
670017--670059	21	2.0	21	86	8	61	34	0	2	62	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127