genome.fa.s656.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  25  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5515226--5515267	22	1.9	22	85	0	57	47	2	0	50	1.14
5515361--5515416	22	2.7	20	76	23	62	50	0	3	46	1.19
5515373--5515412	20	2.1	20	86	9	57	47	0	0	52	1.00
5516845--5516896	27	2.0	26	84	3	68	42	3	1	51	1.31
5516955--5516979	13	1.9	13	100	0	50	36	0	0	64	0.94
5517740--5517783	18	2.6	16	76	13	52	59	0	2	38	1.10
5524598--5524701	34	3.1	34	82	0	127	37	2	5	53	1.40
5527154--5527297	75	1.9	75	87	2	209	39	3	14	42	1.63
5531646--5531688	22	1.9	23	85	4	61	48	2	0	48	1.14
5535199--5535320	63	1.9	63	98	0	235	49	19	7	23	1.74
5542689--5542722	17	1.9	18	88	5	52	88	0	8	2	0.62
5544483--5544540	29	2.0	28	86	3	80	48	0	5	46	1.24
5545294--5545350	23	2.6	21	81	8	60	36	1	7	54	1.38
5545304--5545350	21	2.1	23	84	7	62	36	2	8	53	1.44
5545347--5545401	24	2.3	24	81	3	67	47	0	7	45	1.30
5548265--5548294	14	2.1	14	93	0	51	50	0	0	50	1.00
5548421--5548458	20	2.0	19	90	10	60	57	5	0	36	1.21
5548440--5548570	32	4.1	32	67	15	92	50	6	3	40	1.43
5549845--5549971	32	4.0	31	75	13	114	37	3	6	53	1.42
5550376--5550423	24	2.0	24	84	8	62	47	2	0	50	1.12
5553351--5553380	2	15.0	2	100	0	60	0	50	0	50	1.00
5562508--5562562	26	2.1	26	100	0	110	49	27	3	20	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5562543--5563044	192	2.7	192	81	5	560	39	18	15	27	1.90
5565140--5565175	16	2.2	16	90	0	54	38	2	2	55	1.29
5566139--5566186	21	2.2	22	85	3	62	52	2	0	45	1.12
5566168--5566199	16	2.0	16	93	0	55	53	6	3	37	1.42
5570055--5570137	41	2.0	41	97	0	157	46	15	19	18	1.83
5572323--5572362	13	3.1	13	79	13	55	50	0	5	45	1.23
5578025--5578102	34	2.3	34	93	0	129	35	8	14	41	1.77
5598868--5599670	59	13.6	58	89	5	1204	33	12	7	45	1.72
5599229--5599319	27	3.2	27	62	14	65	36	14	5	43	1.68
5598868--5599670	116	6.8	115	91	5	1198	33	12	7	45	1.72
5599696--5599733	10	3.9	10	83	16	53	78	0	0	21	0.74
5600250--5600316	31	2.2	31	84	10	84	28	22	22	26	1.99
5601086--5601125	18	2.2	18	100	0	80	5	0	5	90	0.57
5601132--5601938	40	20.0	40	88	7	1126	38	20	18	22	1.93
5601132--5601938	81	10.0	81	89	7	1195	38	20	18	22	1.93
5601132--5601938	121	6.7	121	91	5	1241	38	20	18	22	1.93
5603214--5603241	12	2.3	12	100	0	56	0	7	0	92	0.37
5606401--5606918	59	8.6	59	85	9	674	33	12	8	44	1.73
5606401--5606918	121	4.3	117	87	8	697	33	12	8	44	1.73
5606401--5606926	119	4.4	123	85	10	612	33	12	8	45	1.72
5606942--5606979	10	3.9	10	83	16	53	78	0	0	21	0.74
5607005--5607057	20	2.7	19	77	11	63	81	3	5	9	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5607955--5607991	14	2.4	17	86	13	53	75	2	5	16	1.10
5607963--5608088	55	2.3	50	74	19	110	65	4	1	27	1.21
5608495--5608534	15	2.5	17	77	22	50	75	2	5	17	1.10
5615637--5615696	24	2.6	23	82	10	68	45	1	6	46	1.39
5615637--5615695	25	2.5	22	82	12	73	45	1	6	45	1.40
5616062--5616086	13	1.9	13	100	0	50	84	0	0	16	0.63
5615954--5616137	55	3.3	55	75	9	156	59	7	5	27	1.46
5619835--5619864	5	6.0	5	92	0	51	56	20	0	23	1.42
5622671--5622736	26	2.6	25	85	7	96	51	0	3	45	1.16
5622758--5622799	18	2.3	19	84	12	52	64	0	0	35	0.94
5623089--5623151	17	3.5	17	74	21	58	52	3	0	44	1.17
5626969--5627007	3	13.0	3	100	0	78	66	0	0	33	0.92
5628706--5628772	30	2.2	30	83	0	98	40	17	17	23	1.91
5635404--5635450	15	3.2	15	78	3	60	53	0	2	44	1.12
5635472--5635502	16	2.0	15	93	6	53	61	0	0	38	0.96
5635525--5635579	29	1.9	28	82	10	67	34	0	3	61	1.13
5635880--5635914	2	17.5	2	87	0	52	48	0	2	48	1.16
5636062--5636130	30	2.3	30	100	0	138	57	0	2	39	1.13
5642864--5642908	20	2.2	20	88	7	65	46	0	0	53	1.00
5643831--5645614	890	2.0	886	96	1	3302	45	8	13	32	1.74
5651528--5651574	23	2.0	24	87	4	69	48	14	4	31	1.63
5659253--5659319	7	9.0	7	77	18	55	71	1	0	26	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5659253--5659321	8	8.9	8	80	15	65	71	1	0	27	0.95
5659253--5659321	15	4.4	16	74	17	65	71	1	0	27	0.95
5659255--5659321	24	2.8	24	78	17	77	70	1	0	28	0.96
5660353--5660397	21	2.1	21	84	8	56	71	4	4	20	1.21
5660503--5660543	15	2.4	18	88	11	61	73	2	2	21	1.07
5662342--5662430	25	3.5	24	73	10	63	14	2	15	67	1.33
5665817--5665884	22	3.2	21	75	22	70	75	4	20	0	0.98
5666696--5666730	15	2.3	15	90	0	52	82	0	11	5	0.82
5667059--5667144	25	3.5	24	75	12	75	75	0	17	6	1.01
5667517--5667551	9	3.9	9	88	11	54	74	0	14	11	1.08
5667502--5667551	15	3.1	18	83	16	65	76	0	14	10	1.03
5668131--5668345	65	3.3	64	77	13	181	36	19	13	30	1.90
5668199--5668351	33	4.7	33	75	15	131	36	20	13	29	1.91
5668422--5668498	32	2.4	32	76	10	77	37	15	14	32	1.88
5668082--5668580	34	15.1	34	71	15	192	35	18	15	30	1.92
5668682--5668729	22	2.1	22	85	11	62	41	27	14	16	1.87
5669233--5669282	7	6.9	7	80	17	57	74	2	0	24	0.93
5669233--5669272	16	2.5	15	88	11	62	77	2	0	20	0.88
5670808--5670832	3	8.3	3	100	0	50	32	0	0	68	0.90
5670898--5670936	15	2.6	14	88	8	51	79	7	0	12	0.93
5671213--5671264	13	3.8	13	82	10	52	50	30	0	19	1.48
5671202--5671304	40	2.6	40	84	3	127	49	25	2	22	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5671263--5671291	13	2.2	13	100	0	58	51	6	6	34	1.55
5671295--5671362	26	2.7	26	83	2	75	48	25	8	17	1.76
5676675--5676865	94	2.0	94	100	0	382	38	9	14	38	1.78
5677375--5677419	3	15.0	3	100	0	90	66	0	0	33	0.92
5679104--5679137	7	4.9	7	86	13	52	0	11	0	88	0.52
5679102--5679135	12	2.6	13	90	9	52	0	11	0	88	0.52
5679189--5679245	3	18.7	3	85	10	80	31	0	0	68	0.90
5679301--5679346	14	3.4	14	79	14	51	19	6	6	67	1.36
5679610--5679666	25	2.3	24	79	8	69	35	5	17	42	1.72
5679759--5679800	20	2.2	20	91	4	68	26	21	23	28	1.99
5680202--5680245	18	2.4	19	85	11	65	15	0	0	84	0.63
5680205--5680242	14	2.7	14	88	12	60	15	0	0	84	0.63
5680280--5680369	46	2.0	46	97	0	171	41	11	15	32	1.82
5680384--5680474	28	3.2	28	64	27	75	45	6	13	35	1.69
5680328--5680698	58	6.5	57	89	8	551	45	7	12	34	1.71
5680328--5680698	114	3.2	112	90	7	570	45	7	12	34	1.71
5684029--5684061	3	11.0	3	100	0	66	66	0	0	33	0.92
5685680--5685712	14	2.4	14	100	0	66	12	6	6	75	1.16
5685782--5685836	3	17.7	3	82	14	67	30	0	0	69	0.89
5685789--5685832	19	2.4	18	85	14	63	29	0	0	70	0.88
5685782--5685837	28	2.0	29	89	10	89	30	0	0	69	0.89
5686210--5686263	25	2.2	24	83	6	63	35	5	18	40	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5686351--5686390	19	2.0	20	90	4	64	25	17	20	37	1.94
5686616--5686642	5	5.4	5	100	0	54	18	44	37	0	1.50
5686722--5686768	25	1.9	25	82	4	60	6	6	6	80	1.01
5686862--5687203	60	5.8	56	79	12	350	45	7	12	34	1.70
5686863--5687198	117	2.8	115	86	8	439	45	6	13	34	1.69
5689634--5689669	9	4.1	9	89	3	56	22	2	0	75	0.94
5689633--5689666	13	2.6	14	90	9	54	20	2	0	76	0.92
5692307--5692359	4	12.2	4	79	18	54	22	3	1	71	1.12
5694894--5694955	3	20.7	3	100	0	124	66	0	0	33	0.92
5695138--5695682	115	4.7	114	81	5	503	40	20	12	26	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127