genome.fa.s656.2.7.7.80.10.50.1000.72.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  72  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13979353--13979377	13	1.9	13	100	0	50	16	16	0	68	1.22
13980045--13980090	23	2.1	23	88	8	69	32	2	26	39	1.68
13980384--13980424	19	2.2	19	86	0	55	51	0	2	46	1.14
13980682--13980743	20	3.2	19	78	19	65	66	3	0	30	1.08
13981519--13981572	28	1.9	28	84	0	72	72	0	22	5	1.05
13983769--13983820	19	2.6	21	84	9	72	23	1	32	42	1.65
13983806--13983858	21	2.7	20	80	13	56	22	1	33	41	1.65
13983768--13983936	13	12.8	13	67	21	59	20	1	31	46	1.59
13984099--13984362	141	1.9	141	91	0	438	46	12	13	27	1.79
13995635--13995670	17	2.1	17	90	10	56	72	0	0	27	0.85
13997192--13997237	20	2.4	19	89	10	67	43	0	0	56	0.99
13997192--13997237	19	2.3	20	89	10	69	43	0	0	56	0.99
13997621--13997681	21	2.6	22	70	14	52	45	4	6	42	1.51
13998976--13999039	12	5.1	12	73	19	51	70	1	4	23	1.15
13999279--13999327	23	2.0	27	84	15	70	63	2	0	34	1.06
13999431--13999496	16	4.3	15	77	11	62	43	34	0	21	1.53
13999441--13999497	30	1.9	30	92	7	98	47	35	0	17	1.48
13999441--13999501	16	3.9	16	75	12	65	44	37	0	18	1.50
13999544--13999591	22	2.2	21	82	10	60	50	35	0	14	1.44
13999848--13999889	22	2.0	20	82	13	50	30	11	9	47	1.72
14001067--14001105	15	2.6	14	88	11	60	66	5	5	23	1.32
14006484--14006516	11	2.8	12	90	9	50	81	6	12	0	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14008005--14008093	22	4.1	21	88	7	92	33	19	12	34	1.89
14008020--14008093	22	3.4	21	87	9	96	35	20	10	33	1.87
14009725--14009768	8	5.5	8	81	8	54	15	0	2	81	0.78
14009726--14009760	15	2.3	15	90	0	52	17	0	0	82	0.66
14009838--14009892	16	3.5	16	73	19	53	70	1	5	21	1.16
14009862--14009894	12	2.8	12	90	9	50	75	0	3	21	0.93
14010357--14010410	14	3.7	15	85	4	67	55	33	0	11	1.35
14010348--14010405	14	4.1	15	78	8	59	50	39	0	10	1.37
14010348--14010422	29	2.6	28	81	10	80	50	37	0	12	1.39
14010357--14010422	14	4.6	14	79	9	62	53	34	0	12	1.38
14019444--14019508	28	2.4	27	82	5	78	38	0	0	61	0.96
14019465--14019510	23	2.0	24	82	4	58	43	0	0	56	0.99
14019456--14019529	13	6.0	13	72	10	57	41	0	1	56	1.07
14019551--14019586	18	2.1	18	89	5	56	52	0	0	47	1.00
14020038--14020100	32	2.0	32	96	0	117	31	36	14	17	1.90
14021206--14021245	16	2.6	16	88	7	57	72	0	15	12	1.12
14021234--14021278	9	5.0	9	84	7	56	64	2	2	31	1.18
14021234--14021278	19	2.5	18	85	7	56	64	2	2	31	1.18
14021899--14021944	25	2.0	23	83	12	58	71	2	4	21	1.14
14022030--14022072	18	2.4	17	81	11	50	79	6	2	11	1.02
14022047--14022087	15	2.8	14	85	10	55	78	2	2	17	0.98
14022027--14022079	23	2.4	22	81	9	63	75	5	1	16	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14023172--14023206	18	2.0	17	88	5	52	14	8	0	77	0.99
14024643--14024679	19	2.0	19	89	5	58	32	13	10	43	1.79
14025448--14025486	17	2.2	18	90	4	62	23	0	12	64	1.28
14029464--14029516	14	3.7	15	77	22	53	22	7	0	69	1.13
14029478--14029517	16	2.4	17	83	12	55	22	10	0	67	1.20
14034849--14034910	17	3.3	18	73	17	56	72	1	16	9	1.18
14034857--14034909	19	2.9	18	78	10	63	71	0	16	11	1.13
14036019--14036187	64	2.7	63	76	8	162	22	15	8	53	1.69
14036143--14036303	33	4.9	32	79	7	128	16	17	13	53	1.73
14036142--14036355	33	6.5	32	75	8	121	18	18	12	51	1.76
14036374--14036435	32	1.9	32	96	0	115	22	17	9	50	1.75
14036374--14036451	32	2.4	32	91	0	111	21	16	8	52	1.71
14036458--14036551	34	2.8	34	85	1	118	23	20	9	46	1.79
14036678--14036766	33	2.7	33	96	1	162	26	21	5	46	1.73
14039157--14039281	58	2.1	58	85	1	160	11	12	24	51	1.73
14039215--14039377	32	5.1	32	83	0	182	9	14	27	48	1.75
14039900--14039926	3	9.0	3	100	0	54	66	0	0	33	0.92
14042257--14042483	95	2.3	98	81	5	264	42	10	11	35	1.76
14049910--14049962	13	3.8	14	78	9	54	24	18	15	41	1.89
14050306--14050723	43	9.5	43	73	14	263	30	11	16	41	1.83
14050308--14050679	86	4.3	86	76	11	294	30	11	16	41	1.82
14050309--14050582	129	2.1	127	79	12	290	28	12	17	41	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14053276--14053434	86	1.8	86	82	2	203	43	16	3	37	1.64
14056920--14056949	5	6.0	5	96	0	51	0	43	0	56	0.99
14062944--14063194	129	1.9	129	84	0	331	21	14	19	43	1.87
14067520--14067560	20	2.0	20	90	9	64	58	0	2	39	1.11
14067742--14067829	27	3.3	26	75	17	81	57	1	2	38	1.18
14068159--14068199	19	2.2	19	91	4	66	31	0	7	60	1.24
14068168--14068254	27	3.2	26	75	13	84	39	0	3	57	1.16
14068215--14068254	19	2.2	17	86	8	53	42	0	0	57	0.98
14068295--14068344	21	2.4	20	80	9	55	42	2	4	52	1.31
14068347--14068388	18	2.3	18	91	0	66	23	0	7	69	1.13
14068333--14068397	18	3.4	19	81	14	64	29	0	6	64	1.17
14071462--14071525	32	2.1	30	88	11	94	65	0	0	34	0.93
14072194--14072249	25	2.2	25	87	6	78	57	7	5	30	1.48
14072257--14072324	34	2.0	34	85	5	93	51	11	4	32	1.58
14073299--14073325	6	4.5	6	100	0	54	14	0	18	66	1.25
14073670--14074000	154	2.1	154	87	2	477	43	17	10	29	1.82
14076908--14076991	36	2.3	36	89	0	123	26	25	8	40	1.83
14078122--14078173	21	2.5	21	90	6	79	50	0	0	50	1.00
14078122--14078173	22	2.5	22	93	6	90	50	0	0	50	1.00
14079297--14079324	6	4.7	6	100	0	56	46	0	0	53	1.00
14097449--14097492	21	2.1	21	87	8	63	31	6	2	59	1.36
14099290--14099331	16	2.7	16	86	13	61	7	4	4	83	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14099874--14099909	18	1.9	19	88	5	56	19	2	0	77	0.88
14103408--14103460	13	4.1	12	79	13	52	73	1	1	22	1.03
14104981--14105030	16	2.9	16	82	8	55	82	16	2	0	0.77
14104981--14105020	18	2.1	20	90	9	66	85	12	2	0	0.71
14105249--14105329	37	2.3	34	79	10	90	37	18	8	35	1.82
14109078--14109122	13	3.3	13	79	11	54	84	0	13	2	0.72
14109766--14109839	23	3.3	23	72	9	73	81	1	13	4	0.91
14110333--14110391	22	2.4	25	86	13	79	74	0	18	6	1.03
14111586--14111936	176	2.0	173	90	2	551	20	12	12	53	1.71
14113355--14113396	10	4.1	10	84	9	50	85	2	11	0	0.68
14115551--14115662	46	2.4	47	79	7	122	33	7	8	50	1.61
14117906--14117952	25	1.9	25	86	4	69	40	2	12	44	1.54
14118504--14118549	3	15.0	3	95	4	83	67	0	0	32	0.91
14119194--14119232	15	2.6	15	84	11	53	79	0	15	5	0.90
14119203--14119233	16	1.9	16	93	0	53	80	0	12	6	0.89
14119800--14119837	17	2.3	16	83	16	51	39	7	2	50	1.46
14120061--14120101	22	1.9	21	85	14	57	9	9	2	78	1.06
14120082--14120134	12	4.4	12	74	9	54	11	9	1	77	1.07
14120740--14120771	13	2.5	13	94	0	55	56	9	0	34	1.32
14121941--14121984	23	2.0	22	86	4	61	59	2	0	38	1.10
14122242--14122311	28	2.4	29	83	4	88	50	5	11	32	1.62
14123102--14123158	21	2.7	21	72	0	51	42	22	1	33	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14124361--14124398	6	6.5	6	85	14	53	84	0	0	15	0.63
14124361--14124398	18	2.2	18	90	4	60	84	0	0	15	0.63
14125570--14125623	27	2.0	27	100	0	108	40	22	3	33	1.71
14126031--14126081	7	7.1	7	81	16	52	21	1	1	74	1.02
14126196--14126316	21	5.5	21	69	19	77	26	4	2	66	1.22
14126165--14126228	28	2.2	28	81	15	76	23	6	3	67	1.28
14126338--14126384	9	5.1	9	82	5	58	12	4	0	82	0.80
14126190--14126370	4	44.2	4	67	15	61	25	4	1	67	1.20
14127241--14127330	4	21.5	4	72	17	51	23	1	3	72	1.06
14127234--14127330	18	5.7	17	70	19	69	23	1	3	72	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127