genome.fa.s656.2.7.7.80.10.50.1000.89.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  89  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16866529--16868181	36	46.5	36	68	10	352	18	16	12	52	1.75
16866528--16867152	71	8.7	71	72	9	293	18	16	12	52	1.74
16866680--16866766	35	2.4	36	82	1	104	20	18	11	49	1.78
16866642--16866866	107	2.1	107	81	6	269	19	17	11	52	1.74
16867181--16867243	31	2.0	31	84	0	81	15	14	12	57	1.66
16867524--16867715	106	1.8	107	82	3	253	19	14	10	55	1.69
16867776--16867859	35	2.4	35	83	2	96	20	14	10	54	1.69
16867631--16867906	71	3.9	70	72	5	205	20	16	10	52	1.73
16867937--16868222	71	4.0	70	76	8	267	16	13	14	54	1.71
16867739--16868679	36	26.4	35	68	8	166	16	15	15	52	1.75
16867843--16868222	106	3.6	105	76	7	286	17	15	13	53	1.74
16867523--16868649	107	10.5	106	71	7	422	17	15	14	52	1.75
16868082--16868650	214	2.7	214	78	5	560	15	15	16	52	1.76
16869026--16869355	35	9.4	35	64	14	106	17	15	15	51	1.76
16869147--16869295	71	2.1	70	82	8	194	17	15	16	50	1.79
16869344--16869462	36	3.3	35	78	8	105	16	13	14	55	1.69
16869147--16870489	35	37.9	35	69	8	275	16	15	15	53	1.74
16869449--16869822	106	3.5	106	78	4	297	15	15	14	54	1.72
16869840--16870178	108	3.2	105	77	11	309	16	12	14	56	1.68
16869838--16871203	36	38.4	36	67	10	218	17	15	14	52	1.75
16869931--16870446	175	2.9	172	73	9	432	16	14	14	53	1.73
16870243--16870489	106	2.3	105	84	3	309	16	17	14	52	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16870846--16871030	71	2.6	71	77	4	194	16	15	16	52	1.75
16871118--16871311	35	5.6	35	70	13	123	19	13	13	53	1.73
16871106--16871322	71	3.1	69	72	12	221	18	13	16	51	1.76
16871118--16871391	137	2.0	138	94	0	478	20	14	13	51	1.75
16871153--16871347	102	1.9	102	81	6	234	21	14	12	51	1.76
16871145--16871392	35	7.1	34	73	9	146	20	14	12	51	1.76
16871154--16871392	71	3.4	69	74	11	245	21	15	12	51	1.76
16871118--16871443	137	2.4	135	88	5	413	19	13	14	52	1.75
16871489--16871544	21	2.4	21	85	14	67	82	10	3	3	0.92
16872059--16872421	144	2.5	144	78	3	354	30	13	12	44	1.80
16872757--16872795	21	1.9	20	84	5	51	71	2	23	2	1.10
16872823--16872853	11	2.7	12	90	10	55	0	19	0	80	0.71
16873258--16873300	3	14.3	3	100	0	86	32	0	0	67	0.91
16873299--16873355	3	19.0	3	96	0	105	33	31	0	35	1.58
16873498--16873587	45	2.0	45	91	4	146	26	23	22	27	1.99
16873739--16873796	20	2.9	21	87	5	84	13	6	31	48	1.69
16873744--16873808	20	3.3	19	76	8	58	18	6	29	46	1.73
16885328--16885383	27	2.1	27	89	0	85	42	14	16	26	1.86
16886154--16886216	27	2.3	27	97	2	117	31	19	12	36	1.89
16886377--16886437	3	20.7	3	96	3	115	32	0	0	67	0.91
16886830--16886862	11	2.9	11	95	4	57	63	0	18	18	1.31
16889987--16890193	105	2.0	105	90	3	328	40	11	5	42	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16893163--16893231	3	23.0	3	96	0	129	33	1	0	65	1.02
16896262--16896346	7	12.4	7	74	9	68	47	34	0	18	1.49
16896263--16896345	13	6.2	13	76	5	58	45	34	0	19	1.50
16896262--16896353	27	3.4	27	82	7	80	46	32	0	20	1.51
16897461--16897491	10	3.0	10	95	4	53	58	0	3	38	1.15
16897460--16897500	11	3.6	11	80	6	55	63	0	2	34	1.08
16897461--16897499	12	3.5	11	86	10	53	61	0	2	35	1.10
16897517--16897569	25	2.1	25	92	0	88	26	13	5	54	1.60
16898355--16898396	12	3.8	11	75	12	50	85	11	0	2	0.68
16898355--16898401	21	2.2	20	85	10	67	82	14	0	2	0.75
16901800--16901848	19	2.6	19	81	15	57	75	2	16	6	1.09
16901748--16901832	28	3.2	25	79	14	91	77	2	17	2	0.98
16901748--16901837	25	3.5	24	75	21	83	78	2	16	2	0.94
16903596--16903639	23	1.9	23	86	9	63	70	0	20	9	1.14
16904034--16904141	34	3.2	33	78	10	119	27	13	12	45	1.81
16904030--16904173	68	2.1	68	81	7	159	27	15	14	42	1.86
16904152--16904288	70	2.0	70	84	5	179	29	16	12	41	1.85
16904203--16904356	35	4.5	35	73	8	118	31	16	9	41	1.81
16904273--16904369	33	2.9	32	72	20	81	36	17	7	39	1.77
16904257--16904391	68	2.0	69	83	1	173	33	14	10	41	1.80
16904480--16904685	57	3.6	57	78	8	172	23	18	16	41	1.89
16904888--16905028	50	2.8	49	87	6	194	28	15	11	44	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16906258--16906323	25	2.5	26	76	18	73	54	7	18	19	1.67
16907470--16907513	22	2.0	22	86	8	63	9	2	25	63	1.35
16908749--16908829	38	2.2	38	81	2	92	43	14	9	32	1.79
16913310--16913373	10	6.6	10	79	16	55	81	1	12	4	0.92
16913322--16913373	10	5.0	10	90	2	68	84	1	11	1	0.78
16913322--16913367	21	2.1	22	92	4	76	86	2	8	2	0.72
16914465--16914511	22	2.2	22	84	3	60	23	6	23	46	1.75
16914747--16914792	16	2.8	16	90	6	65	28	21	15	34	1.94
16914752--16914813	16	3.6	17	84	4	72	33	19	11	35	1.87
16914733--16914915	17	10.8	17	71	12	81	35	14	11	38	1.83
16914871--16915000	50	2.6	51	80	2	127	35	18	10	36	1.84
16915006--16915038	17	1.9	17	93	0	57	15	12	15	57	1.65
16915057--16915093	18	2.1	17	90	5	56	21	8	18	51	1.72
16915660--16915708	25	2.0	24	88	7	73	67	6	16	10	1.39
16918252--16918316	20	3.3	19	72	10	60	43	36	0	20	1.52
16918409--16918468	25	2.5	24	79	15	61	26	13	6	53	1.64
16921837--16921961	46	2.8	46	81	4	121	35	7	16	41	1.75
16922128--16922367	16	14.4	17	70	6	107	35	8	14	41	1.77
16922128--16922333	51	4.1	50	77	4	157	34	8	14	42	1.76
16922137--16922238	33	3.1	32	75	12	98	38	7	10	43	1.69
16922227--16922300	33	2.2	33	87	0	103	35	9	13	41	1.77
16922257--16922362	33	3.2	33	81	2	124	30	9	16	43	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16923705--16923757	21	2.4	21	93	6	88	58	7	20	13	1.59
16924675--16924716	21	2.0	21	90	0	66	11	4	19	64	1.44
16924675--16924716	10	4.0	11	81	9	52	11	4	19	64	1.44
16926015--16926060	10	4.3	11	76	13	51	0	32	0	67	0.91
16929323--16929370	25	1.9	25	95	0	87	72	4	0	22	1.01
16933506--16933604	39	2.5	38	79	6	99	68	6	5	20	1.30
16933524--16933627	54	1.9	54	84	9	140	68	3	6	21	1.29
16934038--16934086	24	1.9	27	88	12	77	40	8	12	38	1.72
16934090--16934132	15	2.7	15	85	7	59	39	13	11	34	1.82
16934078--16934142	17	3.9	16	80	11	69	35	13	10	40	1.80
16934169--16934203	17	2.1	17	88	0	52	31	14	20	34	1.92
16934298--16934351	21	2.6	21	88	2	83	50	20	0	29	1.49
16934436--16934533	22	4.3	23	67	18	62	44	12	6	36	1.67
16934428--16934534	23	4.7	22	72	4	79	44	12	5	37	1.65
16934450--16934606	45	3.5	45	81	1	154	44	11	3	40	1.59
16934421--16934555	67	2.0	67	85	2	182	44	14	4	36	1.66
16934473--16934596	23	5.5	23	73	9	94	45	12	2	39	1.54
16939071--16939118	20	2.4	20	96	0	87	31	20	8	39	1.82
16943054--16943103	21	2.4	21	83	3	57	70	0	0	30	0.88
16944481--16944654	50	3.5	50	84	5	201	45	16	10	27	1.79
16944475--16944654	100	1.8	100	84	3	247	46	16	11	26	1.80
16945578--16945614	17	2.2	17	90	0	56	5	10	0	83	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16953003--16953037	15	2.3	15	95	0	61	85	0	2	11	0.69
16953214--16953281	9	8.0	8	76	16	50	66	2	0	30	1.07
16953214--16953278	15	4.1	16	84	13	66	66	3	0	30	1.07
16953214--16953267	3	18.0	3	83	11	67	66	3	0	29	1.09
16953218--16953275	12	4.3	13	77	18	57	67	3	0	29	1.07
16953224--16953282	12	4.5	12	80	18	57	69	1	0	28	0.98
16953564--16953596	17	2.0	16	94	5	57	0	39	0	60	0.97
16954044--16954098	22	2.5	23	91	5	80	61	0	5	32	1.19
16954144--16954197	12	4.8	10	77	22	54	64	1	1	31	1.14
16954144--16954197	23	2.3	23	84	12	67	64	1	1	31	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127