genome.fa.s656.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  106  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19562514--19562563	25	1.9	27	84	8	68	60	8	0	32	1.26
19562504--19562549	18	2.6	18	83	10	60	65	6	0	28	1.17
19562661--19562698	20	2.0	20	84	5	51	47	5	5	42	1.48
19562742--19562810	34	2.0	35	88	5	104	27	1	5	65	1.24
19562853--19562888	18	1.9	19	88	5	56	38	0	5	55	1.23
19571414--19571483	32	2.2	32	89	0	104	37	25	11	25	1.90
19571536--19571581	11	3.9	11	78	15	56	67	0	0	32	0.91
19571520--19571603	29	3.0	29	81	16	115	66	0	0	33	0.92
19571538--19571582	9	5.2	9	81	10	58	66	0	0	33	0.92
19571520--19571599	25	3.0	27	85	10	110	66	0	0	33	0.92
19571887--19571920	2	17.0	2	100	0	68	50	0	0	50	1.00
19573467--19573506	20	2.0	20	90	0	62	50	0	2	47	1.14
19579190--19579214	2	12.5	2	100	0	50	52	48	0	0	1.00
19580313--19580345	17	1.9	17	100	0	66	36	6	6	51	1.51
19582874--19583208	166	2.0	166	97	0	634	31	13	20	33	1.92
19587095--19587145	3	17.0	3	100	0	102	33	0	0	66	0.92
19589557--19589695	18	8.1	18	71	20	86	53	2	1	42	1.21
19589555--19589600	16	3.0	16	84	9	69	54	0	0	45	0.99
19589555--19589733	13	12.5	13	70	22	51	54	2	1	42	1.20
19589556--19589727	15	11.6	15	72	18	80	54	2	1	42	1.21
19589602--19589719	54	2.2	55	80	11	129	52	3	0	43	1.23
19589649--19589731	23	3.8	21	78	13	87	55	2	0	42	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19589776--19589880	15	6.8	15	66	27	60	49	0	0	49	1.07
19589780--19589832	17	2.9	19	75	16	58	47	0	0	52	1.00
19589826--19589890	25	2.6	26	88	7	91	49	1	0	49	1.10
19589824--19589921	47	2.0	50	81	13	116	46	1	0	52	1.07
19589875--19589919	22	2.1	20	84	12	54	46	0	0	53	1.00
19590533--19590572	17	2.4	17	87	4	55	57	5	2	35	1.34
19590741--19590780	17	2.4	16	84	12	53	52	10	7	30	1.62
19596558--19596584	2	13.5	2	100	0	54	51	0	48	0	1.00
19598191--19598230	19	2.2	19	86	4	55	42	15	12	30	1.83
19603013--19603050	2	19.0	2	94	0	67	47	0	2	50	1.15
19604969--19604998	2	15.0	2	100	0	60	0	0	50	50	1.00
19611380--19611447	6	11.3	6	72	17	52	63	0	0	36	0.95
19611380--19611457	26	2.8	28	82	11	106	64	0	0	35	0.94
19611379--19611457	16	5.3	16	68	28	59	63	0	0	36	0.95
19611398--19611452	10	5.5	10	80	0	56	63	0	0	36	0.95
19611746--19611787	2	21.0	2	100	0	84	50	0	0	50	1.00
19620160--19620192	17	1.9	17	100	0	66	36	6	6	51	1.51
19626790--19626831	3	14.0	3	100	0	84	33	0	0	66	0.92
19629034--19629060	14	1.9	14	100	0	54	51	0	0	48	1.00
19629245--19629415	18	10.1	18	70	21	113	53	1	1	42	1.21
19629257--19629450	13	14.3	13	68	23	93	53	2	1	42	1.21
19629311--19629361	14	3.4	14	72	27	50	50	1	3	43	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19629332--19629439	56	2.0	54	85	7	146	52	2	0	43	1.22
19629369--19629451	23	3.8	21	78	13	87	55	2	0	42	1.13
19629510--19629536	14	1.9	14	100	0	54	55	0	0	44	0.99
19629547--19629611	25	2.6	26	88	7	91	49	1	0	49	1.10
19629586--19629642	18	2.7	21	79	20	57	45	0	0	54	0.99
19629509--19629635	59	2.2	59	80	11	145	48	0	0	51	1.06
19630255--19630294	17	2.4	17	87	4	55	57	5	2	35	1.34
19630463--19630502	17	2.4	16	84	12	53	52	10	7	30	1.62
19631665--19631714	23	2.2	23	100	0	100	34	4	22	40	1.72
19635294--19635359	32	2.1	32	100	0	132	40	3	16	39	1.64
19636358--19636390	2	16.5	2	100	0	66	51	0	48	0	1.00
19640828--19640853	9	2.9	9	100	0	52	11	0	7	80	0.89
19642849--19642878	2	15.0	2	92	0	51	46	0	3	50	1.18
19644787--19644813	2	13.5	2	100	0	54	0	0	48	51	1.00
19650064--19650112	22	2.3	20	77	16	53	44	10	2	42	1.49
19651089--19651146	23	2.5	23	85	2	71	27	17	43	12	1.84
19651208--19651249	11	3.9	11	81	15	52	28	0	0	71	0.86
19651239--19651287	16	3.1	16	75	18	50	36	0	0	63	0.95
19651843--19651958	35	3.1	37	71	14	112	40	13	24	21	1.89
19651771--19652758	74	13.6	74	82	4	1046	42	14	22	20	1.88
19652181--19652284	34	3.1	33	70	5	91	44	14	23	18	1.86
19652642--19652749	35	3.0	35	67	7	90	43	13	22	20	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19653804--19653856	27	2.0	27	85	7	72	5	13	5	75	1.16
19653821--19653874	19	2.8	18	76	20	56	5	9	5	79	1.04
19665507--19665551	24	2.0	22	86	8	63	24	0	2	73	0.95
19666690--19666719	11	2.6	12	89	10	53	33	0	0	66	0.92
19669650--19669691	20	2.0	21	86	13	61	54	0	2	42	1.13
19677537--19677621	22	3.8	21	72	14	71	30	4	2	62	1.28
19677859--19677898	20	2.0	20	85	9	55	50	0	2	47	1.14
19683913--19683938	2	13.0	2	100	0	52	50	0	0	50	1.00
19691019--19691052	15	2.3	15	89	0	50	73	0	26	0	0.83
19691110--19691151	5	8.4	5	94	0	75	64	0	35	0	0.94
19702729--19702757	2	15.0	2	92	7	51	51	0	48	0	1.00
19703204--19703246	15	2.9	15	89	6	61	76	0	23	0	0.78
19703208--19703246	5	7.8	5	86	11	53	76	0	23	0	0.78
19703305--19703341	5	7.4	5	93	0	65	64	0	35	0	0.94
19715007--19715053	23	2.0	23	87	0	67	31	10	14	42	1.80
19720488--19720517	14	2.1	15	93	6	53	30	0	0	70	0.88
19733883--19733920	19	2.0	19	89	0	58	21	2	5	71	1.19
19734838--19734869	17	1.9	16	93	6	55	40	0	0	59	0.97
19735079--19735104	12	2.2	12	100	0	52	84	0	0	15	0.62
19736460--19736503	18	2.3	20	85	14	67	43	0	0	56	0.99
19736464--19736506	19	2.4	18	88	11	70	41	0	0	58	0.98
19736460--19736508	18	2.8	17	85	14	64	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19746223--19746254	3	10.7	3	100	0	64	65	0	0	34	0.93
19746598--19746669	30	2.4	28	77	11	72	41	4	1	52	1.29
19746637--19746693	23	2.5	23	91	2	89	42	0	1	56	1.10
19746685--19746742	22	2.9	21	68	31	54	46	1	5	46	1.35
19749415--19749693	95	2.9	92	77	14	264	43	4	2	50	1.35
19749528--19749566	10	3.5	11	86	10	53	51	0	0	48	1.00
19749875--19749922	25	2.0	24	84	12	62	52	2	0	45	1.12
19755401--19755437	15	2.5	15	90	0	56	40	0	2	56	1.13
19762909--19762934	3	8.7	3	100	0	52	0	30	0	69	0.89
19766378--19766455	27	2.7	30	79	13	83	44	0	1	53	1.08
19766434--19766488	26	2.1	27	86	10	78	34	0	0	65	0.93
19768569--19768749	67	2.7	65	76	9	195	46	11	22	20	1.81
19768468--19768720	66	3.8	64	73	14	165	45	9	23	21	1.82
19769001--19769054	18	3.0	18	77	20	67	33	5	20	40	1.76
19769289--19769373	24	3.6	24	74	17	79	42	17	8	31	1.79
19769297--19769372	23	3.3	23	72	20	77	43	17	7	31	1.77
19769286--19769373	46	1.9	46	88	0	131	42	17	7	32	1.78
19785119--19785442	166	2.0	164	91	2	533	44	7	4	42	1.54
19793383--19793416	6	5.7	6	92	0	50	44	2	0	52	1.16
19793659--19793696	18	2.0	20	85	10	53	52	2	0	44	1.14
19796647--19796680	16	2.1	16	88	5	50	0	26	0	73	0.83
19797434--19797474	19	2.1	20	86	4	57	26	9	12	51	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19809739--19809908	62	2.7	61	74	8	155	37	16	6	40	1.74
19809800--19809982	62	2.9	62	75	4	197	36	17	6	39	1.76
19809727--19810007	124	2.3	124	81	4	341	37	15	6	40	1.74
19819460--19819526	31	2.1	32	91	2	109	35	8	0	55	1.32
19819475--19819521	15	3.1	15	71	17	51	42	4	0	53	1.20
19827103--19827181	39	2.0	39	97	0	149	26	2	27	43	1.68
19836391--19836415	13	1.9	13	100	0	50	72	4	0	24	1.02
19836507--19836597	29	3.1	29	71	9	69	47	1	3	48	1.25
19836570--19836617	15	3.1	17	71	20	50	35	0	0	64	0.94
19838235--19838268	11	3.1	11	91	0	50	64	0	2	32	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127