Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  64  of  127  ( 15156 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12529968--12530006
16
2.4
16
86
0
51
17
7
2
71
1.21
12530951--12530975
9
2.8
9
100
0
50
0
32
24
44
1.54
12537935--12537981
23
2.0
23
95
0
85
17
8
19
55
1.67
12546350--12546395
7
6.9
7
82
7
51
54
13
0
32
1.39
12546347--12546385
20
2.0
20
94
0
69
51
15
0
33
1.44
12548046--12548086
21
1.9
21
85
5
55
7
7
9
75
1.18
12554974--12555074
50
2.0
50
86
3
141
30
16
17
34
1.93
12559422--12559464
22
1.9
22
85
4
59
25
13
6
53
1.65
12572475--12572500
3
8.7
3
100
0
52
65
0
0
34
0.93
12572951--12572995
23
1.9
24
82
13
58
11
13
0
75
1.05
12572942--12572987
18
2.6
18
82
3
58
8
13
0
78
0.97
12574948--12574976
15
2.0
15
93
6
51
13
3
6
75
1.13
12575242--12575294
21
2.5
21
84
9
63
43
1
0
54
1.11
12576776--12576819
19
2.2
20
88
11
65
43
0
2
54
1.12
12578041--12578065
2
12.5
2
100
0
50
0
48
0
52
1.00
12578069--12578103
2
18.0
2
94
5
63
48
0
0
51
1.00
12579660--12579709
23
2.1
22
85
14
64
52
2
0
46
1.12
12585382--12585431
21
2.4
21
83
6
66
20
8
2
70
1.23
12585382--12585430
20
2.4
21
82
3
55
20
8
2
69
1.24
12586149--12586195
18
2.6
18
96
0
85
25
0
38
36
1.56
12587202--12587237
17
2.2
16
90
9
56
41
16
2
38
1.63
12589856--12589911
17
3.8
16
80
20
68
42
7
0
50
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12589850--12589909
27
2.3
24
75
25
59
45
5
0
50
1.23
12589925--12589959
15
2.2
16
90
5
54
57
2
2
37
1.29
12591631--12591665
17
2.1
17
88
0
52
74
0
2
22
0.95
12591631--12591665
14
2.5
15
90
9
56
74
0
2
22
0.95
12593969--12594025
15
3.5
15
80
19
62
15
1
5
77
1.03
12593959--12594021
23
2.8
21
74
21
56
15
1
4
77
1.01
12594018--12594106
3
27.7
3
78
15
81
33
3
0
62
1.11
12594015--12594109
33
2.9
33
79
16
117
33
3
0
63
1.10
12594017--12594131
56
2.1
53
90
4
176
33
4
0
61
1.21
12594935--12595054
10
12.6
10
72
17
71
23
0
3
72
1.05
12594978--12595055
15
5.2
15
75
20
65
17
1
1
79
0.87
12594987--12595055
5
12.8
5
91
8
93
17
1
0
81
0.77
12595051--12595350
58
5.1
58
84
8
344
42
5
10
41
1.62
12595051--12595350
118
2.5
113
81
9
343
42
5
10
41
1.62
12595168--12595205
16
2.4
16
82
4
51
42
5
2
50
1.39
12595284--12595323
15
2.6
15
88
4
53
37
2
2
57
1.26
12601070--12601119
13
3.8
13
82
10
50
76
0
16
8
1.02
12601084--12601126
13
3.4
12
80
6
50
74
0
13
11
1.07
12602215--12602523
130
2.4
128
82
8
383
23
13
18
44
1.85
12602138--12602548
44
9.5
43
78
8
326
23
13
18
43
1.86
12602781--12602814
15
2.3
15
90
5
52
14
2
5
76
1.09
12602794--12602976
4
45.8
4
69
16
55
28
3
1
65
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12602832--12602971
3
44.7
3
69
19
65
32
4
0
62
1.20
12602824--12602959
12
11.3
12
67
21
72
33
3
0
61
1.19
12602810--12602976
16
10.6
16
73
17
95
30
3
1
64
1.18
12602824--12602975
10
14.9
10
68
21
77
32
3
0
63
1.18
12602845--12602974
67
2.0
66
82
10
158
33
3
0
62
1.19
12602842--12602976
51
2.7
50
85
7
168
32
3
0
62
1.18
12602894--12602975
26
3.2
26
68
15
73
30
4
0
64
1.14
12602939--12603052
58
2.0
56
89
6
176
18
11
1
68
1.28
12603838--12603967
9
14.0
10
68
23
63
26
2
0
70
1.04
12603899--12603964
6
12.0
5
87
9
69
18
3
0
78
0.87
12603884--12603969
24
3.3
25
77
18
95
20
3
0
75
0.95
12603833--12603974
12
11.8
12
70
23
61
24
3
0
71
1.07
12603995--12604324
120
2.8
117
84
8
408
43
5
11
39
1.65
12603995--12604264
60
4.6
58
91
3
407
43
5
11
39
1.64
12604386--12604426
17
2.5
17
88
7
59
0
7
2
90
0.54
12609053--12609234
89
2.0
89
98
0
355
56
10
12
20
1.65
12609205--12609396
93
2.1
93
94
0
348
55
7
13
23
1.63
12610137--12610167
2
15.5
2
100
0
62
51
0
0
48
1.00
12611876--12611919
22
2.0
22
91
8
72
34
0
2
63
1.07
12612244--12612951
236
3.0
236
78
10
636
30
12
6
50
1.64
12613217--12613276
16
3.8
16
78
6
52
30
8
0
61
1.25
12613052--12613503
231
2.0
231
89
1
701
30
11
6
51
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12613761--12615015
233
5.4
230
76
8
896
32
10
5
52
1.59
12616478--12616517
18
2.2
19
90
4
64
52
7
2
37
1.43
12617582--12617625
19
2.3
19
92
0
70
11
13
2
72
1.21
12617989--12618034
20
2.3
20
85
3
58
26
4
0
69
1.07
12619829--12619877
22
2.4
20
80
12
55
57
2
2
38
1.22
12621158--12621194
17
2.2
18
86
13
53
45
2
0
51
1.15
12621818--12621873
19
2.8
20
72
2
60
33
5
5
55
1.45
12624237--12624282
20
2.3
20
85
10
60
52
8
0
39
1.33
12624293--12624352
32
2.0
31
87
9
88
53
5
0
41
1.23
12626082--12626129
25
1.9
24
87
8
69
33
2
2
62
1.18
12626089--12626145
24
2.3
25
82
8
64
31
1
5
61
1.28
12626737--12626811
22
3.4
22
75
3
62
46
1
12
40
1.49
12626781--12626854
22
3.4
22
75
16
64
51
6
8
33
1.58
12627031--12627199
22
7.8
22
70
9
69
47
5
8
37
1.58
12627021--12627181
87
1.8
88
81
6
202
48
6
8
37
1.58
12627031--12627371
65
5.2
66
72
8
189
48
4
9
36
1.57
12627031--12627192
44
3.7
43
74
8
123
47
6
8
37
1.59
12627021--12627211
87
2.2
87
78
11
194
48
6
7
37
1.58
12627279--12627340
22
2.8
22
80
9
56
53
4
9
32
1.55
12627291--12627416
63
2.0
63
82
3
155
50
6
7
34
1.57
12627293--12627425
22
6.2
21
76
8
90
51
7
6
33
1.56
12627464--12627534
33
2.2
33
84
5
90
52
2
5
39
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12627499--12627602
43
2.4
44
81
10
117
49
11
4
34
1.60
12627452--12627674
22
10.2
22
70
7
87
46
8
7
37
1.63
12627574--12627657
44
1.9
44
82
0
105
46
8
9
35
1.67
12627932--12628026
22
4.3
22
68
10
59
51
4
7
36
1.49
12627949--12628029
11
7.4
11
70
4
56
51
3
4
39
1.41
12627945--12628296
22
15.9
22
70
13
141
48
4
7
39
1.53
12627932--12628394
44
10.5
43
69
10
134
50
4
8
37
1.52
12628072--12628242
90
1.9
90
80
7
204
51
5
5
37
1.49
12627976--12628240
11
23.9
11
62
14
62
49
4
6
39
1.48
12628310--12628422
22
5.1
22
75
8
95
50
5
10
33
1.60
12628289--12628417
66
2.0
66
82
3
161
54
5
9
31
1.55
12628404--12628471
22
3.2
21
76
16
68
45
8
11
33
1.72
12628541--12628703
22
7.4
22
75
6
93
37
9
12
41
1.75
12628541--12628681
66
2.1
66
80
2
158
38
8
11
41
1.72
12628541--12628709
44
3.8
44
75
6
137
38
8
12
40
1.74
12628650--12628753
44
2.4
44
83
0
118
41
10
11
36
1.76
12629087--12629194
21
5.2
20
73
7
72
41
12
10
36
1.76
12629212--12629350
70
2.0
68
84
5
181
45
7
2
44
1.46
12638444--12638480
19
1.9
19
94
0
65
24
16
18
40
1.90
12643595--12644166
304
1.9
303
80
5
679
37
15
13
33
1.87
12646299--12646325
2
13.5
2
100
0
54
48
0
0
51
1.00
12648965--12649100
21
6.4
21
78
8
116
38
6
7
47
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12649473--12649515
22
2.0
22
85
0
59
41
2
6
48
1.43
12649486--12649538
11
4.8
11
73
0
52
41
1
3
52
1.30
12649486--12649633
22
6.7
22
73
9
95
40
4
4
50
1.44
12649917--12650024
18
5.4
20
71
20
57
49
1
0
48
1.18
12649917--12649969
17
3.2
17
76
7
56
50
0
1
47
1.12
12649910--12650040
38
3.4
38
80
13
144
48
1
0
48
1.16
12649947--12650110
22
7.3
23
66
19
80
49
1
0
48
1.11
12649910--12650032
41
3.1
39
81
9
135
47
1
0
49
1.16
12650016--12650114
11
8.8
11
70
20
55
49
1
0
49
1.07
12650449--12650533
43
2.0
44
85
2
118
38
7
3
50
1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127