genome.fa.s656.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  62  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12076803--12076837	17	2.1	17	88	0	52	17	5	0	77	0.96
12076804--12076858	24	2.3	24	81	3	76	20	3	0	76	0.94
12079499--12079536	2	19.0	2	84	10	51	50	2	0	47	1.15
12085167--12085215	22	2.3	22	96	3	91	40	12	12	34	1.80
12089972--12090014	22	2.0	22	90	0	68	41	11	11	34	1.78
12099125--12099193	29	2.3	29	82	9	86	50	1	4	43	1.30
12101784--12101822	2	20.0	2	94	5	71	51	0	0	48	1.00
12116697--12116737	20	2.1	19	86	9	55	43	7	0	48	1.30
12116705--12116752	18	2.5	19	86	6	62	35	4	0	60	1.16
12116705--12116747	18	2.2	20	88	8	63	37	4	0	58	1.19
12123703--12123762	25	2.4	25	83	5	77	50	0	1	48	1.11
12123672--12123753	25	3.5	22	73	14	67	47	0	1	51	1.08
12123717--12123785	25	2.8	25	79	12	63	52	0	1	46	1.09
12123746--12123806	23	3.0	20	72	19	56	57	0	0	42	0.98
12131230--12131292	23	2.7	23	85	0	81	36	4	17	41	1.71
12132142--12132184	22	1.9	23	90	4	70	30	0	2	67	1.03
12132610--12132661	14	3.6	14	77	12	52	55	26	0	17	1.42
12132802--12132849	15	3.2	15	80	11	53	52	27	0	20	1.47
12134515--12134553	18	2.2	18	95	0	69	35	10	12	41	1.77
12138115--12138389	103	2.7	103	84	3	347	48	17	5	28	1.70
12139400--12139752	143	2.5	143	76	10	353	32	10	13	43	1.78
12141237--12141318	31	2.7	31	86	5	114	48	30	0	20	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12141276--12141319	19	2.3	20	80	7	56	47	27	0	25	1.52
12141406--12141455	20	2.5	19	80	6	55	50	32	2	16	1.56
12142350--12142394	23	2.0	22	86	4	63	71	8	0	20	1.12
12144227--12144424	103	1.9	103	83	6	258	40	9	9	40	1.71
12144574--12144603	15	1.9	16	93	6	53	50	13	6	30	1.67
12144628--12144665	19	2.0	19	89	0	58	55	7	7	28	1.57
12144759--12144794	17	2.1	17	94	0	63	83	2	0	13	0.76
12144763--12144806	17	2.6	17	81	0	52	81	4	4	9	0.96
12144749--12144793	22	2.0	22	91	8	72	82	2	2	13	0.86
12145074--12145122	22	2.2	22	85	0	62	67	6	2	24	1.24
12145086--12145123	11	3.5	11	88	0	58	65	2	0	31	1.06
12146150--12146897	161	4.7	157	75	9	489	41	14	9	33	1.78
12145879--12146898	322	3.2	317	76	9	766	42	14	9	33	1.78
12146444--12146884	157	2.8	158	79	9	486	42	14	8	35	1.76
12146329--12146891	161	3.5	155	77	8	490	42	14	8	34	1.76
12148845--12148873	12	2.5	12	94	5	51	31	0	0	68	0.89
12149466--12149500	13	2.7	13	90	0	52	5	25	45	22	1.74
12150400--12150471	6	10.8	6	73	24	56	75	5	19	0	1.00
12150685--12151148	48	9.9	46	85	8	548	35	25	13	25	1.93
12150685--12151143	139	3.3	137	86	7	611	36	25	13	24	1.93
12150685--12151153	187	2.5	187	92	3	773	35	25	13	25	1.93
12160829--12160861	13	2.5	13	86	13	50	81	0	18	0	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12163276--12163316	21	2.0	21	90	0	64	43	26	4	24	1.74
12171165--12171567	222	1.8	222	87	2	612	37	10	15	36	1.82
12171588--12171617	7	4.3	7	100	0	60	56	0	0	43	0.99
12175786--12176060	103	2.7	103	85	3	356	48	17	5	28	1.70
12177069--12177413	143	2.4	143	75	9	326	30	11	14	43	1.80
12178906--12178987	31	2.7	30	86	5	119	48	31	0	19	1.49
12178945--12178988	19	2.3	20	80	7	56	47	27	0	25	1.52
12179075--12179124	20	2.5	19	80	6	55	50	32	2	16	1.56
12180026--12180073	23	2.0	24	84	4	62	72	10	2	14	1.19
12182405--12182434	15	1.9	15	93	6	51	50	13	6	30	1.67
12182593--12182631	15	2.6	16	88	8	55	87	2	2	7	0.73
12182589--12182631	20	2.2	20	91	8	70	86	2	2	9	0.76
12182580--12182633	23	2.2	25	83	12	67	85	1	3	9	0.80
12183522--12183565	22	2.0	22	90	0	70	70	4	2	22	1.17
12183528--12183578	11	4.5	11	82	7	57	64	1	1	31	1.15
12184299--12184371	17	4.3	17	75	6	76	36	12	16	34	1.86
12184293--12184364	34	2.1	34	84	0	90	34	15	13	36	1.87
12184306--12184407	34	3.0	35	77	8	93	34	12	17	35	1.88
12184790--12184930	46	3.1	46	82	4	133	45	15	5	33	1.70
12184781--12184944	45	3.6	47	77	4	147	42	15	7	34	1.75
12184824--12184939	46	2.5	46	84	4	144	43	16	8	31	1.78
12190597--12190789	103	1.9	103	82	6	248	32	6	16	44	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12190603--12190811	103	2.0	103	80	8	230	36	5	14	43	1.69
12190932--12190973	23	1.9	21	90	9	66	50	9	4	35	1.56
12192037--12192066	11	2.7	11	94	0	51	66	3	0	30	1.07
12193715--12195869	161	13.4	160	74	7	1299	43	14	8	33	1.77
12193715--12195858	481	4.5	474	76	7	1476	42	14	8	33	1.77
12194174--12195886	805	2.1	799	79	6	1854	43	14	8	33	1.77
12194322--12195870	320	4.8	318	80	6	1299	42	14	8	33	1.77
12197082--12197115	13	2.6	13	85	0	50	58	5	8	26	1.51
12199292--12199332	21	2.0	21	85	0	55	41	26	7	24	1.81
12207125--12207537	221	1.9	221	87	4	609	35	10	16	37	1.83
12207129--12207586	221	2.1	221	82	7	520	36	10	16	36	1.83
12219350--12219391	21	2.0	21	90	0	66	45	16	16	21	1.86
12220111--12220135	12	2.1	12	100	0	50	40	8	16	36	1.77
12220982--12221025	22	2.0	22	81	0	52	50	2	6	40	1.42
12229251--12229284	16	2.1	17	88	5	52	50	0	5	44	1.26
12230731--12230760	3	10.0	3	92	0	51	63	0	3	33	1.11
12233542--12233583	21	2.0	21	90	0	66	45	16	16	21	1.86
12234223--12234272	24	2.0	25	92	3	84	44	8	2	46	1.44
12235169--12235212	22	2.0	22	81	0	52	50	2	6	40	1.42
12238726--12238828	23	4.3	24	74	9	75	39	0	1	57	1.16
12238726--12238830	35	3.0	34	68	17	88	40	0	1	57	1.16
12238717--12238873	71	2.2	72	85	6	205	38	1	2	56	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12249731--12249773	15	2.8	15	82	13	52	74	0	16	9	1.06
12250430--12250476	21	2.2	21	85	7	60	17	2	10	70	1.26
12250439--12250484	21	2.1	22	88	8	67	19	2	10	67	1.31
12251413--12251472	19	3.1	19	77	13	59	16	3	1	78	0.97
12251804--12251848	14	3.1	15	79	20	51	68	6	2	22	1.24
12255389--12255431	16	2.8	16	82	3	52	58	0	0	41	0.98
12255394--12255450	26	2.2	25	81	9	62	64	0	0	35	0.93
12261735--12261790	28	2.0	28	96	0	103	41	16	14	28	1.87
12273813--12274037	115	2.0	115	95	0	405	25	16	19	39	1.91
12276444--12276479	2	18.0	2	100	0	72	0	50	0	50	1.00
12286572--12286616	21	2.1	21	84	8	56	28	0	0	71	0.87
12291271--12291301	12	2.7	11	90	9	53	35	0	0	64	0.94
12294548--12294585	4	10.0	4	91	5	53	26	0	2	71	1.00
12294637--12294678	3	13.7	3	90	5	66	61	0	0	38	0.96
12295134--12295176	20	2.2	20	87	8	61	30	4	11	53	1.57
12299742--12299795	29	1.9	30	82	14	71	62	0	1	35	1.06
12300621--12300671	24	2.1	24	88	0	75	17	1	9	70	1.24
12303876--12303947	31	2.3	31	82	0	90	45	4	11	38	1.59
12308918--12308958	20	2.0	20	90	0	64	41	12	14	31	1.83
12314935--12315024	33	2.9	31	77	16	96	63	4	1	31	1.21
12314952--12315002	26	2.1	25	82	10	61	64	0	0	35	0.94
12314950--12315028	30	2.7	29	84	11	99	65	1	1	31	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12316206--12316239	12	2.8	12	95	0	59	55	8	26	8	1.59
12316684--12316728	19	2.2	21	84	11	67	11	15	0	73	1.10
12320726--12320764	5	7.8	5	100	0	78	38	0	0	61	0.96
12323019--12323049	16	1.9	16	93	0	53	77	0	3	19	0.90
12323851--12323897	14	3.4	14	82	5	51	70	4	10	14	1.31
12323872--12323896	7	3.6	7	100	0	50	64	0	12	24	1.27
12324660--12324692	14	2.4	14	90	10	50	87	3	9	0	0.63
12324843--12324885	12	3.6	12	78	12	52	58	0	0	41	0.98
12327232--12327257	13	2.0	13	100	0	52	23	0	0	76	0.78
12327556--12327590	12	3.0	12	87	8	54	77	8	0	14	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127