Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  120  of  127  ( 15156 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23178390--23178463
9
8.6
8
76
16
51
24
8
12
55
1.63
23178352--23178495
18
8.1
18
70
11
82
26
8
10
54
1.62
23178336--23178495
53
3.0
53
75
8
153
27
8
11
53
1.65
23184529--23184553
13
1.9
13
100
0
50
52
8
16
24
1.70
23196189--23196277
30
2.9
30
75
16
85
39
2
1
57
1.19
23196276--23196365
30
3.0
29
75
13
85
57
6
1
34
1.32
23198200--23198241
21
2.0
21
85
4
57
40
0
2
57
1.12
23202174--23202255
40
2.0
40
92
0
137
46
6
30
17
1.72
23209103--23209154
12
4.2
12
75
7
50
63
0
0
36
0.95
23210544--23210602
29
2.0
29
83
3
73
33
11
13
40
1.81
23211966--23212019
25
2.2
25
90
3
83
29
11
11
48
1.73
23211978--23212032
25
2.2
25
93
0
92
30
10
12
45
1.77
23215272--23215332
18
3.3
17
78
15
59
63
0
1
34
1.04
23215284--23215339
26
2.2
25
81
12
60
67
0
1
30
1.01
23222009--23222104
48
2.0
47
91
2
156
34
7
19
38
1.80
23222743--23222915
86
2.0
86
96
0
319
39
20
13
25
1.90
23225288--23225320
17
1.9
17
93
0
57
18
15
0
66
1.25
23229241--23229326
8
10.8
8
71
20
56
34
3
4
56
1.37
23229863--23229935
31
2.4
31
86
2
94
26
4
21
47
1.68
23230400--23230455
24
2.2
26
84
12
73
69
7
0
23
1.12
23230425--23230469
22
2.0
24
83
16
60
62
11
0
26
1.29
23230467--23230552
46
1.9
45
88
4
129
44
13
5
36
1.69
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23234146--23234179
10
3.3
10
88
8
50
88
0
5
5
0.64
23234458--23234515
10
6.0
10
74
11
50
75
1
8
13
1.10
23235326--23235491
86
1.9
86
86
0
233
34
17
9
38
1.82
23235348--23235550
86
2.3
85
79
9
214
35
17
8
38
1.80
23235842--23236417
120
4.8
120
73
8
411
20
23
11
44
1.84
23236684--23236839
3
55.3
3
75
18
77
39
1
3
55
1.24
23236648--23236777
38
3.4
37
77
12
97
36
3
5
53
1.42
23236748--23236838
20
4.3
20
74
12
74
43
0
2
53
1.12
23236698--23236835
56
2.4
58
76
17
144
40
1
3
54
1.27
23237643--23237703
25
2.4
25
79
15
72
16
4
6
72
1.24
23240775--23240806
16
2.0
16
93
0
55
37
21
15
25
1.93
23242726--23242794
20
3.4
20
82
4
93
40
2
8
47
1.49
23243112--23243224
22
5.1
22
79
4
111
39
7
6
46
1.56
23243121--23243281
22
7.4
21
74
14
96
39
6
6
47
1.55
23243295--23243353
22
2.8
21
78
16
68
40
13
1
44
1.54
23243364--23243418
22
2.5
21
82
8
65
27
10
5
56
1.56
23244031--23244113
22
3.7
22
76
6
67
36
13
7
43
1.71
23244108--23244155
22
2.2
22
84
0
60
37
6
6
50
1.53
23244137--23244175
20
2.0
20
84
0
51
35
0
10
53
1.35
23244159--23244210
22
2.4
21
83
6
59
42
5
5
46
1.51
23244281--23244394
11
10.6
11
66
11
58
35
2
6
56
1.38
23244284--23244401
63
1.9
61
84
3
155
34
3
5
55
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23244502--23244641
65
2.1
67
81
6
162
35
10
4
50
1.56
23244272--23244643
22
17.2
22
69
11
178
36
8
5
50
1.56
23244847--23244949
22
4.7
22
75
4
91
38
8
1
50
1.45
23247392--23247444
15
3.5
15
74
5
52
47
3
0
49
1.19
23247379--23247443
31
2.1
31
85
2
87
43
3
0
53
1.16
23247986--23248035
2
25.0
2
91
0
82
50
0
4
46
1.20
23252256--23252421
74
2.2
74
80
8
185
48
10
3
37
1.55
23253925--23254081
52
3.0
52
88
1
208
25
26
9
38
1.86
23254106--23254147
11
3.8
11
87
0
57
47
30
2
19
1.62
23254106--23254148
22
2.0
22
90
0
68
46
30
2
20
1.63
23254972--23255128
52
3.0
52
86
1
199
25
25
9
39
1.86
23255153--23255194
11
3.8
11
87
0
57
47
30
2
19
1.62
23255153--23255195
22
2.0
22
90
0
68
46
30
2
20
1.63
23272938--23273018
39
2.1
39
81
6
94
53
3
17
25
1.60
23273085--23273159
30
2.5
31
86
8
109
36
8
1
54
1.38
23273212--23273279
30
2.3
29
82
10
75
52
0
2
44
1.16
23274679--23274719
20
2.0
20
86
9
57
34
0
0
65
0.93
23274740--23274797
22
2.6
23
78
13
66
56
1
0
41
1.09
23274758--23274805
24
2.0
25
84
8
64
62
2
0
35
1.07
23277709--23277753
20
2.1
22
80
12
58
37
0
0
62
0.96
23277920--23277962
22
1.9
23
85
4
61
44
2
0
53
1.13
23284415--23284485
31
2.4
28
76
19
72
54
0
4
40
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23305797--23305832
18
2.0
18
88
0
54
50
0
0
50
1.00
23306863--23306895
2
16.5
2
93
0
57
51
3
0
45
1.16
23319768--23319799
2
16.5
2
93
6
57
53
0
0
46
1.00
23347795--23347829
2
17.5
2
93
0
61
45
2
0
51
1.16
23352048--23352081
17
2.0
17
88
0
50
47
0
0
52
1.00
23352065--23352118
22
2.3
25
79
20
64
50
3
0
46
1.19
23352605--23352647
21
2.0
21
95
0
77
44
16
20
18
1.87
23358131--23358181
14
3.5
15
77
15
54
49
0
0
50
1.00
23363977--23364176
21
9.6
21
78
8
167
36
8
7
48
1.61
23363977--23364180
83
2.5
82
80
6
200
36
7
7
48
1.60
23363977--23364176
104
1.9
104
83
4
260
36
8
7
48
1.61
23365146--23365184
3
12.7
3
94
5
69
0
33
0
66
0.92
23373599--23373638
13
3.1
13
81
0
53
50
7
0
42
1.30
23379520--23379552
16
2.1
16
88
11
50
66
0
0
33
0.92
23379521--23379566
22
2.0
22
87
8
65
65
0
0
34
0.93
23379519--23379566
11
4.1
12
79
12
55
66
0
0
33
0.92
23379575--23379615
21
1.9
22
90
5
66
63
0
0
36
0.95
23380798--23380842
12
4.0
11
82
11
56
53
0
2
44
1.13
23393530--23393570
6
6.8
6
94
0
64
36
51
2
9
1.48
23395625--23395667
4
10.8
4
100
0
86
25
0
23
51
1.49
23399085--23399128
21
2.0
22
86
4
63
43
2
2
52
1.26
23407821--23407858
2
19.0
2
94
0
67
0
47
0
52
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23434471--23434528
29
2.0
29
96
0
107
24
20
32
22
1.98
23443476--23443506
4
7.8
4
92
0
53
22
0
3
74
0.96
23443727--23443752
11
2.4
11
100
0
52
92
0
7
0
0.39
23443784--23443810
11
2.5
11
100
0
54
14
0
14
70
1.17
23443783--23443829
19
2.4
19
85
7
58
14
0
12
72
1.13
23444306--23444687
192
2.0
192
82
8
467
48
7
9
34
1.64
23448973--23449032
9
6.6
9
77
11
68
81
0
11
6
0.86
23448973--23449028
16
3.7
15
82
15
62
82
0
10
7
0.85
23448993--23449046
26
2.0
28
82
13
69
74
3
7
14
1.18
23448993--23449046
27
2.0
27
85
7
74
74
3
7
14
1.18
23449216--23449249
15
2.2
16
89
5
52
26
11
11
50
1.73
23450086--23450163
21
3.7
21
77
1
84
39
10
14
35
1.80
23450635--23450999
42
8.6
42
85
3
428
25
16
12
45
1.82
23450638--23450999
85
4.3
85
83
3
435
24
17
12
45
1.82
23450639--23450999
127
2.8
126
84
3
463
24
17
11
45
1.82
23451577--23451618
21
2.0
20
90
4
66
19
0
16
64
1.30
23453176--23453213
20
1.9
19
85
15
51
63
15
0
21
1.31
23454510--23454619
54
2.0
54
98
0
211
44
5
3
46
1.44
23456307--23456355
17
2.8
17
82
11
64
36
0
0
63
0.95
23456912--23456936
13
1.9
13
100
0
50
44
0
16
40
1.47
23458452--23458493
20
2.0
20
86
13
57
42
0
0
57
0.99
23462506--23462530
13
1.9
13
100
0
50
44
0
16
40
1.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23467177--23467218
20
2.0
20
86
13
57
42
0
0
57
0.99
23470742--23470783
19
2.2
19
83
8
50
21
2
9
66
1.32
23471242--23471266
13
1.9
13
100
0
50
44
0
16
40
1.47
23475926--23475967
20
2.0
20
86
13
57
42
0
0
57
0.99
23478916--23478973
26
2.2
26
78
9
64
18
1
10
68
1.26
23479024--23479061
10
3.9
10
83
16
53
34
0
0
65
0.93
23479025--23479062
19
2.1
19
95
5
69
36
0
0
63
0.95
23479893--23479935
21
2.0
21
86
4
59
44
11
6
37
1.68
23483443--23483720
117
2.4
117
89
4
409
37
11
5
45
1.65
23483443--23483720
59
4.7
59
87
4
391
37
11
5
45
1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127