genome.fa.s656.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  45  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8990176--8991111	238	3.9	251	73	10	626	33	11	4	50	1.58
8991770--8991804	18	1.9	18	94	0	61	25	0	2	71	1.00
8992590--8992641	18	2.7	20	73	8	54	44	1	0	53	1.11
8995275--8995339	29	2.2	30	80	5	78	20	41	4	33	1.72
8997340--8997371	3	10.7	3	100	0	64	31	0	0	68	0.90
8999825--8999871	15	3.1	15	82	11	53	23	0	10	65	1.23
8999966--9000029	16	3.9	16	71	21	53	34	3	0	62	1.11
8999997--9000029	15	2.3	15	89	5	50	30	0	0	69	0.88
8999972--9000029	30	1.9	30	83	13	75	31	3	0	65	1.09
8999994--9000042	14	3.6	14	79	15	50	30	0	2	67	1.02
9001724--9001785	24	2.6	24	87	7	90	56	9	0	33	1.32
9001800--9001920	47	2.6	45	82	10	138	57	8	1	33	1.39
9001909--9001982	17	4.2	16	73	18	51	48	13	6	31	1.68
9001949--9001987	20	2.1	19	90	9	62	41	15	7	35	1.76
9002587--9002643	17	3.4	16	76	9	51	70	5	1	22	1.17
9002643--9002688	20	2.4	19	78	7	56	34	8	4	52	1.52
9003272--9003312	18	2.2	19	86	4	57	41	2	2	53	1.27
9003372--9003400	15	2.0	15	93	6	51	51	6	0	41	1.28
9012647--9013526	357	2.5	354	85	3	1167	36	11	13	37	1.82
9026694--9026732	20	2.0	20	100	0	78	17	5	5	71	1.23
9027873--9027947	19	3.8	20	76	11	75	57	5	1	36	1.30
9027873--9027977	10	10.4	10	68	17	56	60	5	1	32	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9028712--9028764	27	2.0	27	85	7	72	52	20	13	13	1.73
9029060--9029396	10	33.9	10	63	15	65	36	2	5	56	1.33
9029051--9029164	42	2.7	44	81	14	125	42	0	3	53	1.24
9029134--9029231	18	5.2	18	80	9	99	28	1	5	65	1.20
9029163--9029219	17	3.2	17	88	9	87	26	0	5	68	1.11
9029172--9029228	17	3.2	17	87	5	51	29	0	5	64	1.15
9029227--9029398	30	5.7	30	74	5	143	36	3	6	53	1.44
9029214--9029353	60	2.3	60	82	7	158	33	3	5	57	1.40
9031633--9031711	26	3.0	26	98	0	149	43	13	7	35	1.73
9032121--9032163	6	7.2	6	89	0	68	32	0	13	53	1.41
9032121--9032186	12	5.4	12	82	8	53	31	1	15	51	1.52
9032178--9032221	12	3.8	12	85	8	56	50	11	0	38	1.39
9032447--9032533	44	2.0	44	95	0	156	33	12	21	32	1.91
9032457--9032551	44	2.2	44	82	3	111	34	14	21	29	1.93
9033429--9033618	93	2.0	93	92	0	317	27	26	15	30	1.96
9037358--9037397	19	2.1	19	86	9	55	10	5	2	82	0.91
9037372--9037405	17	2.0	17	88	0	50	14	2	8	73	1.19
9037571--9037605	17	2.1	17	88	0	52	14	0	5	80	0.89
9044035--9044067	17	2.0	17	88	5	50	72	0	0	27	0.85
9046415--9046448	13	2.6	13	90	0	59	47	0	2	50	1.16
9047643--9047686	13	3.3	13	83	3	61	81	9	2	6	0.94
9048656--9048689	18	1.9	17	94	5	59	23	0	2	73	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9049015--9049053	18	2.2	17	86	4	51	64	2	2	30	1.21
9050462--9050511	22	2.3	22	86	6	75	82	12	2	4	0.90
9055006--9055093	35	2.5	35	92	0	140	36	7	13	42	1.74
9055006--9055120	35	3.4	34	85	4	117	35	8	13	41	1.76
9055510--9055641	43	3.1	43	77	8	153	27	7	18	46	1.75
9055510--9055726	84	2.5	86	79	8	192	27	8	18	45	1.79
9055796--9056114	49	6.7	48	67	19	134	25	10	19	44	1.82
9055724--9055955	106	2.2	106	88	0	338	21	14	20	43	1.87
9055583--9056590	386	2.6	382	86	5	1322	24	13	20	42	1.87
9055884--9056135	132	1.9	133	87	2	373	25	8	20	46	1.78
9055947--9056135	42	4.4	42	74	11	157	25	7	20	46	1.77
9056161--9056499	48	6.8	48	66	21	153	23	14	20	41	1.89
9056120--9056339	105	2.1	105	92	0	359	21	14	22	42	1.88
9056220--9056590	147	2.5	145	87	2	537	23	15	20	39	1.91
9056017--9056486	252	1.9	252	85	2	649	22	13	20	43	1.87
9056668--9056872	50	4.1	50	82	10	258	26	12	21	38	1.90
9056667--9056860	99	2.0	100	96	1	363	27	12	21	38	1.89
9056683--9056904	51	4.4	51	81	10	258	27	13	21	38	1.90
9057797--9057824	14	2.0	14	100	0	56	64	0	28	7	1.20
9059592--9059662	26	2.8	26	87	4	101	49	0	1	49	1.09
9059652--9059724	17	3.9	19	68	16	55	54	0	1	43	1.08
9059636--9059729	18	5.4	18	75	16	74	52	1	1	45	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9059752--9059880	15	8.6	15	81	3	152	41	0	1	57	1.08
9059858--9059895	18	2.1	18	90	0	58	50	0	0	50	1.00
9059757--9059938	90	2.0	90	80	10	203	44	1	2	51	1.23
9060003--9060049	22	2.1	22	81	14	53	36	8	4	51	1.52
9061088--9061142	18	3.1	18	76	7	58	30	5	12	50	1.63
9061119--9061188	34	2.1	34	86	0	95	25	12	15	45	1.82
9061133--9061187	17	3.2	17	73	0	56	27	16	16	40	1.89
9069197--9069255	30	1.9	30	82	6	73	33	5	3	57	1.37
9069309--9069338	5	5.8	5	96	4	51	80	0	3	16	0.85
9070209--9070340	3	42.3	3	71	18	92	57	3	3	35	1.32
9070213--9070285	32	2.4	31	90	6	121	58	4	2	34	1.31
9070202--9070337	44	3.1	44	84	6	163	58	3	2	35	1.31
9070542--9070648	54	2.0	54	81	3	126	34	13	25	27	1.93
9070787--9071293	114	4.5	114	75	4	405	35	14	23	26	1.93
9071640--9071751	34	3.2	33	74	12	100	35	12	17	33	1.88
9071620--9071785	69	2.4	69	80	4	192	34	12	17	36	1.87
9071794--9071828	18	1.9	18	100	0	70	34	20	17	28	1.95
9072830--9072897	21	3.2	20	81	8	73	1	7	5	85	0.80
9072829--9072913	12	6.9	12	73	13	59	1	5	9	83	0.85
9072826--9072899	20	3.9	19	79	13	73	1	8	6	83	0.85
9072843--9072911	20	3.5	19	81	15	77	0	5	11	82	0.83
9072829--9072913	8	10.2	8	78	15	59	1	5	9	83	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9073195--9073227	5	6.8	5	86	6	50	3	15	0	81	0.80
9076924--9076993	31	2.2	33	82	7	92	27	5	5	61	1.41
9077061--9077101	19	2.2	19	91	4	66	80	2	2	14	0.92
9077067--9077113	19	2.5	19	85	0	58	78	2	8	10	1.04
9077988--9078166	3	57.7	3	74	18	145	59	2	3	34	1.29
9078047--9078196	42	3.6	41	81	11	146	56	2	5	35	1.36
9078149--9078221	31	2.4	30	82	11	85	54	4	5	35	1.42
9082753--9082795	17	2.5	17	85	14	54	23	0	11	65	1.25
9083055--9083103	17	2.9	17	85	11	73	22	4	10	63	1.43
9083055--9083104	16	3.0	16	78	18	57	24	4	10	62	1.44
9084087--9084130	5	9.0	5	90	5	72	18	0	2	79	0.83
9084090--9084127	19	2.0	20	94	5	69	15	0	2	81	0.80
9084268--9084302	15	2.2	16	90	5	54	17	8	2	71	1.23
9085874--9085949	40	1.9	40	91	0	125	39	7	14	38	1.75
9091994--9092034	17	2.4	18	80	12	50	53	4	2	39	1.35
9094328--9094361	13	2.5	13	85	4	50	73	2	0	23	0.97
9094795--9094842	23	2.1	22	84	3	60	72	2	16	8	1.18
9094994--9095051	29	2.0	29	86	6	82	51	3	8	36	1.49
9096275--9096320	10	4.3	11	81	8	51	34	0	0	65	0.93
9096298--9096403	10	10.7	10	68	17	51	33	1	3	60	1.26
9096337--9096376	14	2.8	15	88	7	57	35	0	2	62	1.09
9096364--9096428	26	2.5	26	84	2	85	33	3	4	58	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9096383--9096460	30	2.8	28	78	12	72	37	6	3	52	1.45
9097867--9097899	2	16.5	2	100	0	66	0	0	48	51	1.00
9098434--9098472	19	2.0	20	90	5	62	41	23	17	17	1.91
9100290--9100329	19	2.0	20	90	4	64	20	0	10	70	1.16
9100523--9100570	25	1.9	25	95	0	87	47	0	10	41	1.37
9101271--9101314	18	2.4	18	96	0	79	29	31	11	27	1.91
9104314--9104404	18	5.1	18	74	14	55	31	25	5	37	1.79
9104314--9104357	21	2.1	21	83	8	54	27	25	6	40	1.80
9104340--9104405	18	3.8	18	71	15	59	34	25	4	34	1.77
9105437--9105556	60	2.0	60	100	0	240	36	13	26	23	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127