genome.fa.s656.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  121  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23483738--23483812	6	12.7	6	69	18	50	77	1	4	17	0.99
23483738--23483811	13	5.7	13	74	15	64	77	1	4	17	1.00
23483751--23483814	23	2.9	21	79	9	65	78	1	4	15	1.00
23483816--23483864	19	2.6	19	80	6	55	61	6	0	32	1.21
23484715--23484853	42	3.2	41	76	9	100	64	4	4	27	1.31
23484788--23484946	4	39.2	4	68	16	62	62	2	3	32	1.24
23484782--23484877	22	4.5	22	77	6	99	62	2	4	31	1.26
23484783--23484935	14	10.9	13	67	23	73	62	2	3	32	1.25
23484807--23484855	18	2.5	19	83	12	64	61	2	2	34	1.19
23484782--23484888	42	2.5	42	84	4	126	60	2	3	32	1.29
23485833--23485861	2	14.5	2	100	0	58	48	0	0	51	1.00
23486893--23486923	14	2.2	14	100	0	62	25	0	0	74	0.82
23487197--23487243	25	2.0	24	84	12	62	23	4	2	70	1.16
23488253--23488306	28	1.9	28	100	0	108	64	11	0	24	1.25
23502150--23502175	3	8.7	3	100	0	52	65	0	0	34	0.93
23502174--23502210	3	12.7	3	94	5	67	35	0	0	64	0.94
23506817--23506859	18	2.3	18	84	4	50	20	4	4	69	1.25
23521205--23521258	14	3.9	14	73	26	53	35	1	0	62	1.06
23521199--23521283	36	2.3	38	75	18	90	37	1	0	61	1.04
23526215--23526254	4	10.0	4	94	0	71	75	2	0	22	0.93
23527050--23527119	32	2.2	32	94	0	122	45	8	14	31	1.75
23532346--23532399	19	2.8	19	83	5	65	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23536482--23536518	19	1.9	19	88	0	56	37	16	8	37	1.78
23536781--23536809	1	29.0	1	100	0	58	0	0	0	100	0.00
23545706--23545753	22	2.2	21	79	13	53	56	2	2	39	1.23
23546814--23546890	36	2.2	36	90	2	120	27	28	11	32	1.92
23550503--23550542	2	20.0	2	100	0	80	50	0	50	0	1.00
23553316--23553428	44	2.6	44	80	4	122	50	14	8	26	1.71
23553399--23553484	43	2.0	44	84	6	113	43	13	15	27	1.85
23553399--23553532	49	2.9	45	81	7	137	41	13	14	29	1.85
23553337--23553572	44	5.3	43	74	12	145	44	13	12	29	1.81
23556345--23556553	105	2.0	105	87	0	301	32	18	10	39	1.84
23556818--23556863	24	1.9	24	90	0	74	43	0	26	30	1.55
23557751--23557927	59	3.0	58	82	6	212	46	6	10	36	1.64
23559090--23559146	18	3.2	18	78	9	71	26	12	5	56	1.57
23561658--23561702	14	3.2	13	82	14	54	77	2	17	2	0.97
23561658--23561704	24	2.0	23	87	4	67	76	2	17	4	1.04
23562047--23562102	9	6.9	8	82	13	62	82	0	7	10	0.85
23562042--23562101	18	3.6	16	84	13	77	80	0	8	11	0.92
23562048--23562074	7	3.9	7	100	0	54	88	0	0	11	0.50
23562966--23563009	23	1.9	23	90	0	70	50	6	18	25	1.71
23563579--23563621	22	1.9	23	86	13	63	32	16	18	32	1.93
23563781--23564119	41	8.3	41	84	0	408	25	10	20	43	1.82
23565206--23565238	15	2.2	15	89	10	50	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23565202--23565340	60	2.3	61	80	7	149	46	5	10	38	1.59
23565242--23565384	60	2.5	60	79	5	161	45	4	12	37	1.64
23584281--23584320	21	1.9	21	84	0	53	65	2	2	30	1.19
23584393--23584431	17	2.2	19	86	9	55	41	0	2	56	1.13
23586576--23586616	18	2.2	20	86	8	59	39	0	0	60	0.96
23588735--23588789	14	3.6	14	73	21	56	40	0	1	58	1.09
23588725--23588792	33	2.1	33	100	0	136	39	0	2	57	1.14
23588725--23588779	18	3.2	18	75	15	71	40	0	3	56	1.17
23588732--23588787	19	3.2	19	71	23	68	42	0	1	55	1.10
23593659--23593695	10	3.6	10	85	7	56	32	0	0	67	0.91
23601048--23601297	128	2.0	128	94	0	437	47	4	11	36	1.61
23601060--23601324	128	2.1	128	88	0	386	49	5	10	34	1.60
23602701--23602734	10	3.5	10	92	4	52	50	0	8	41	1.34
23604563--23604589	2	13.5	2	100	0	54	0	48	0	51	1.00
23608520--23608547	2	14.0	2	100	0	56	50	0	0	50	1.00
23609876--23609901	2	13.0	2	100	0	52	50	0	0	50	1.00
23611979--23612057	41	1.9	41	100	0	158	39	7	18	34	1.80
23616609--23616648	21	2.0	20	85	5	53	37	0	2	60	1.11
23616660--23616716	28	2.0	28	86	6	80	52	0	3	43	1.18
23618288--23618315	2	14.0	2	100	0	56	50	0	0	50	1.00
23619331--23619368	16	2.2	18	86	13	62	52	0	2	44	1.14
23635458--23635614	52	3.0	52	85	1	208	29	20	7	43	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23635640--23635682	11	3.8	11	84	3	59	51	25	0	23	1.49
23635640--23635683	22	2.0	23	90	4	72	50	25	0	25	1.50
23636616--23636670	5	11.2	5	75	9	51	21	0	3	74	0.97
23636622--23636666	23	2.0	23	90	0	72	22	0	4	73	1.01
23636754--23636801	24	1.9	26	87	8	73	70	4	8	16	1.27
23636783--23636807	13	1.9	13	100	0	50	84	0	0	16	0.63
23637844--23637872	8	3.8	8	95	4	51	79	0	0	20	0.74
23637998--23638067	34	2.1	34	100	0	140	47	2	11	38	1.55
23640072--23640101	2	15.0	2	100	0	60	50	0	50	0	1.00
23640946--23640992	16	2.6	18	80	12	53	65	8	0	25	1.20
23647688--23647717	4	7.8	4	92	7	53	80	0	20	0	0.72
23648339--23648374	7	5.1	7	93	0	63	27	44	25	2	1.68
23649010--23649037	2	14.0	2	100	0	56	50	0	50	0	1.00
23656532--23656563	3	10.7	3	93	0	55	71	0	0	28	0.86
23675802--23676193	195	2.0	195	98	0	757	31	11	24	32	1.91
23682304--23682340	6	6.2	6	93	0	65	32	16	32	18	1.93
23683567--23683595	2	14.5	2	100	0	58	51	0	48	0	1.00
23684769--23684906	69	2.0	69	98	0	267	39	11	8	39	1.72
23694864--23694943	29	2.7	30	78	9	92	57	1	0	41	1.07
23694866--23694951	33	2.5	33	81	7	93	56	1	0	41	1.06
23694897--23694949	24	2.3	24	84	12	67	56	0	0	43	0.99
23694864--23694939	36	2.2	36	84	13	97	57	1	0	40	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23696069--23696132	23	2.8	23	75	15	62	59	0	0	40	0.97
23701050--23701080	2	15.5	2	100	0	62	51	0	0	48	1.00
23701936--23701969	2	17.0	2	100	0	68	50	0	0	50	1.00
23704395--23704433	19	2.1	18	85	4	51	7	17	0	74	1.05
23705396--23705493	50	2.0	50	83	0	124	18	16	16	48	1.81
23707654--23707689	2	18.0	2	100	0	72	50	0	0	50	1.00
23709895--23709983	29	3.0	28	77	9	88	40	6	0	52	1.28
23709895--23709965	30	2.4	28	86	6	88	39	7	0	53	1.28
23714729--23714799	36	2.0	36	91	0	115	35	18	26	19	1.95
23718755--23718803	18	2.7	18	80	0	53	61	4	0	34	1.15
23733245--23733332	2	44.0	2	100	0	176	50	0	50	0	1.00
23733498--23733584	43	2.0	43	90	0	138	35	18	20	25	1.95
23733904--23733970	32	2.2	32	86	5	93	46	1	1	50	1.19
23742884--23742913	15	2.0	15	93	0	51	16	36	0	46	1.47
23745923--23745962	18	2.2	18	90	0	62	47	5	5	42	1.47
23751096--23751148	21	2.5	22	93	6	92	49	0	0	50	1.00
23751113--23751179	29	2.4	27	80	9	80	56	1	0	41	1.08
23757475--23757504	6	5.0	6	95	0	51	0	36	0	63	0.95
23760020--23760215	101	1.9	102	89	3	306	38	16	12	31	1.87
23763574--23763639	26	2.6	26	95	2	116	33	18	3	45	1.65
23768882--23768916	12	2.8	12	91	4	52	22	0	0	77	0.78
23773572--23773620	23	2.1	23	85	7	64	38	14	0	46	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23774841--23774899	22	2.7	23	89	7	72	47	0	0	52	1.00
23774847--23774899	22	2.4	22	93	6	90	47	0	0	52	1.00
23775114--23775156	22	2.0	21	86	4	59	34	0	0	65	0.93
23775595--23775629	17	2.1	17	88	0	52	34	2	5	57	1.37
23775597--23775644	21	2.3	21	82	10	64	35	2	4	58	1.29
23776405--23776442	19	2.0	19	89	0	58	63	2	2	31	1.22
23776896--23776943	15	3.2	15	77	11	53	41	2	6	50	1.39
23790624--23790699	24	3.1	24	80	3	80	46	1	2	50	1.24
23792666--23792704	18	2.2	18	86	9	53	33	2	2	61	1.23
23796648--23796691	19	2.3	19	88	11	63	31	0	2	65	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127