genome.fa.s656.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  108  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20100593--20100764	41	4.1	42	91	5	276	22	15	25	37	1.92
20101019--20101084	4	16.8	4	73	17	50	25	1	3	69	1.11
20101020--20101156	20	7.1	20	67	22	62	28	2	3	65	1.21
20102222--20102277	18	3.3	17	80	11	62	14	3	1	80	0.93
20102299--20102653	58	6.0	58	83	10	425	45	6	12	35	1.68
20104989--20105029	21	2.0	21	86	13	59	53	0	0	46	1.00
20104989--20105034	22	2.1	21	84	11	58	54	0	0	45	0.99
20116900--20116943	19	2.4	19	85	14	65	50	6	15	27	1.70
20119193--20119240	13	3.5	13	81	15	53	45	27	0	27	1.54
20119707--20119767	31	2.0	31	83	6	79	55	0	14	29	1.40
20123865--20123916	18	2.7	19	71	17	54	36	5	21	36	1.77
20124632--20124668	19	2.0	19	89	5	58	40	0	24	35	1.55
20126225--20126274	26	1.9	26	95	0	91	52	10	4	34	1.54
20130140--20130244	34	3.1	33	79	8	104	46	8	10	34	1.69
20131420--20131482	30	2.1	31	96	3	119	39	3	3	53	1.33
20132819--20132893	9	8.3	9	80	0	60	5	24	34	36	1.78
20132819--20132893	6	12.5	6	75	0	60	5	24	34	36	1.78
20132819--20132896	21	3.7	21	80	0	75	5	23	35	35	1.77
20133991--20134028	16	2.4	16	86	8	51	39	15	7	36	1.77
20134245--20134294	23	2.1	23	81	3	55	38	12	4	46	1.60
20134533--20134561	2	14.5	2	100	0	58	51	0	0	48	1.00
20134644--20134710	30	2.4	27	78	9	73	76	7	1	14	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20136648--20136713	31	2.1	31	85	0	87	37	4	6	51	1.47
20137027--20137055	14	2.1	14	93	6	51	13	3	20	62	1.46
20137697--20137884	91	2.1	90	83	2	241	42	13	11	32	1.79
20137786--20138256	125	3.7	125	76	5	407	39	12	11	35	1.80
20137797--20138265	252	1.9	252	82	6	601	38	12	11	37	1.81
20138215--20138686	251	1.9	250	80	7	564	37	12	11	38	1.80
20138281--20138628	62	5.5	62	72	9	188	36	13	11	38	1.81
20138270--20138917	126	5.1	124	77	8	488	37	12	11	38	1.79
20138353--20138641	64	4.6	63	72	10	216	39	13	10	36	1.80
20138265--20138917	125	5.2	125	76	7	489	37	11	11	38	1.79
20138276--20138918	251	2.5	249	80	7	640	38	12	11	38	1.79
20140430--20140570	61	2.3	62	84	6	180	43	14	12	30	1.81
20142551--20142589	3	13.0	3	100	0	78	66	0	0	33	0.92
20143957--20144041	41	2.2	38	82	6	98	25	2	0	71	0.98
20143966--20144041	19	3.8	20	84	8	84	27	2	0	69	1.01
20143990--20144082	19	5.0	19	83	11	97	20	5	1	73	1.10
20143959--20144109	36	4.1	36	75	18	107	24	4	1	69	1.15
20144431--20144574	6	23.5	6	69	18	57	22	2	2	72	1.07
20144438--20144471	4	8.5	4	87	12	52	23	0	0	76	0.79
20144506--20144574	5	13.8	5	78	18	65	17	4	0	78	0.91
20144506--20144574	18	3.9	16	80	16	75	17	4	0	78	0.91
20144501--20144575	30	2.5	30	83	12	100	17	6	0	76	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20144674--20144903	59	3.9	58	83	6	295	44	6	12	36	1.68
20146157--20146209	26	2.0	26	85	10	72	73	1	1	22	1.03
20146454--20146505	3	17.3	3	100	0	104	34	0	0	65	0.93
20147019--20147076	25	2.4	25	79	2	64	51	10	1	36	1.46
20149295--20149336	11	3.8	11	93	0	75	21	0	28	50	1.49
20149294--20149336	22	2.0	22	100	0	86	23	0	27	48	1.51
20149362--20149516	52	3.0	52	81	5	152	41	7	22	27	1.81
20156408--20156432	5	5.0	5	100	0	50	0	40	0	60	0.97
20156955--20157067	56	2.0	56	91	3	183	50	13	7	28	1.69
20178945--20178988	2	23.0	2	90	9	74	50	50	0	0	1.00
20182441--20182488	22	2.1	23	84	3	62	45	12	18	22	1.83
20184562--20184595	11	3.2	11	87	4	52	58	0	0	41	0.98
20185364--20185453	41	2.2	42	82	5	105	45	3	0	51	1.18
20187526--20187554	14	2.0	15	93	6	51	55	20	10	13	1.68
20193779--20193805	12	2.2	12	100	0	54	92	0	7	0	0.38
20194081--20194110	3	10.3	3	92	7	53	30	0	0	70	0.88
20195546--20195597	16	3.2	16	83	0	59	51	3	3	40	1.38
20196194--20196238	9	4.8	9	81	10	54	40	0	4	55	1.20
20196659--20196711	19	2.8	18	76	15	54	50	1	1	45	1.23
20198979--20199007	13	2.1	14	93	6	51	58	0	0	41	0.98
20198986--20199058	23	3.2	22	81	12	85	63	0	4	32	1.14
20217811--20217928	59	2.0	59	91	0	191	31	22	15	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20219082--20219132	26	2.0	26	85	11	70	41	0	1	56	1.10
20222367--20222404	10	3.8	10	83	13	51	34	10	7	47	1.67
20230648--20230713	34	2.0	33	87	3	96	40	9	6	43	1.61
20234913--20234945	14	2.3	15	89	5	50	48	6	0	45	1.27
20239270--20239381	51	2.2	51	82	3	127	22	19	14	43	1.87
20252319--20252347	13	2.3	13	94	5	51	68	13	10	6	1.37
20256755--20256780	3	8.7	3	100	0	52	69	0	0	30	0.89
20261340--20261401	31	2.1	29	87	6	88	53	6	17	22	1.67
20264630--20264751	62	2.0	62	83	3	156	39	11	4	44	1.62
20264728--20264835	14	7.4	14	68	16	60	37	4	3	53	1.39
20264808--20264839	14	2.2	14	94	5	55	43	0	6	50	1.27
20264688--20264892	73	2.8	72	83	7	252	35	9	5	49	1.59
20264822--20265011	60	3.2	60	84	11	250	35	11	3	50	1.56
20265025--20265062	14	2.5	15	83	8	51	78	0	5	15	0.91
20265094--20265136	12	3.2	12	84	15	50	69	0	0	30	0.88
20265462--20265501	20	2.0	20	85	9	55	27	20	20	32	1.97
20266007--20266200	44	4.4	44	85	8	220	46	19	13	20	1.83
20266007--20266280	88	3.1	85	81	11	270	47	17	14	21	1.82
20266047--20266281	44	5.3	44	84	9	200	46	16	14	22	1.83
20267262--20267301	8	4.8	8	84	9	53	12	5	0	82	0.82
20267249--20267300	9	6.1	9	78	19	58	11	9	0	78	0.95
20267254--20267301	17	2.9	17	81	6	64	12	6	0	81	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20271167--20271288	62	2.0	62	83	6	158	36	9	7	45	1.65
20271345--20271376	14	2.2	14	94	5	55	43	0	6	50	1.27
20271344--20271603	57	4.5	57	86	8	346	36	11	5	46	1.63
20271229--20271427	73	2.8	73	89	1	303	34	9	6	49	1.60
20271362--20271588	117	1.9	117	90	3	359	36	12	5	45	1.65
20271424--20271609	60	3.2	56	87	5	212	37	12	5	44	1.66
20271616--20271652	16	2.4	15	86	8	56	86	0	2	10	0.67
20271683--20271717	3	11.7	3	93	0	61	68	2	0	28	1.04
20274932--20275017	8	10.5	8	72	13	50	77	4	4	12	1.07
20276015--20276039	4	6.2	4	100	0	50	24	0	0	76	0.80
20276140--20276164	13	1.9	13	100	0	50	80	0	0	20	0.72
20281374--20281408	11	3.2	11	91	0	52	91	0	5	2	0.50
20282291--20282405	61	1.9	61	88	0	176	35	9	12	42	1.75
20282341--20282444	35	2.9	35	81	5	109	39	10	11	38	1.76
20282733--20282811	42	1.9	40	87	5	113	26	8	17	46	1.77
20282918--20283019	48	2.1	48	78	7	109	27	13	15	43	1.85
20282778--20283336	147	3.8	147	84	3	703	25	14	19	41	1.89
20283224--20283397	48	3.7	49	75	14	179	26	11	20	41	1.86
20282779--20283336	294	1.9	294	87	1	823	25	14	19	41	1.89
20283272--20283397	42	2.8	44	80	11	141	26	11	20	41	1.86
20283214--20283353	42	3.2	43	73	15	115	27	12	17	41	1.86
20283216--20283397	90	2.0	90	90	2	285	26	12	19	42	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20283088--20283572	237	2.1	236	86	1	675	25	11	19	43	1.85
20283306--20283621	146	2.2	148	84	2	442	25	11	19	43	1.84
20283675--20283817	50	2.8	49	78	4	115	27	11	21	39	1.88
20284104--20284140	15	2.4	16	90	4	58	81	10	0	8	0.89
20284104--20284140	16	2.3	16	90	9	58	81	10	0	8	0.89
20284104--20284145	17	2.5	16	84	7	57	80	9	0	9	0.89
20288712--20288787	5	14.0	5	71	28	50	75	3	1	19	1.04
20288694--20288760	25	2.6	25	79	9	73	73	2	1	22	1.06
20288713--20288790	17	4.2	18	76	14	70	76	3	1	17	1.00
20289220--20289266	20	2.3	20	89	7	69	48	31	6	12	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127