genome.fa.s656.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  100  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18777942--18777980	6	6.5	6	84	0	51	48	2	35	12	1.55
18784116--18784157	2	21.0	2	100	0	84	0	50	0	50	1.00
18795440--18795489	3	16.7	3	100	0	100	32	0	0	68	0.90
18798137--18798193	25	2.3	25	82	8	64	52	0	0	47	1.00
18798811--18798851	2	20.5	2	90	9	66	48	2	0	48	1.14
18800706--18800765	14	4.1	14	78	8	57	41	0	1	56	1.09
18804906--18804930	11	2.3	11	100	0	50	32	8	0	60	1.26
18806686--18807423	161	4.6	160	80	5	722	41	15	10	33	1.80
18806686--18807420	320	2.3	321	81	4	802	41	15	10	33	1.81
18812885--18813060	87	2.0	87	80	2	199	36	13	9	40	1.78
18812975--18813275	62	4.8	66	73	11	218	34	13	11	40	1.80
18831993--18832022	6	5.0	6	100	0	60	0	33	0	66	0.92
18832344--18832369	1	26.0	1	100	0	52	0	0	0	100	0.00
18836183--18836285	33	3.1	33	72	5	91	23	26	22	28	1.99
18836369--18836470	51	2.0	51	100	0	204	31	27	15	25	1.96
18836430--18836507	33	2.4	33	93	0	129	32	30	16	20	1.95
18836869--18837060	33	5.8	33	79	6	165	31	33	12	21	1.91
18836867--18837029	66	2.5	66	81	8	188	31	35	11	22	1.89
18836915--18837108	66	2.9	66	80	4	178	28	30	16	23	1.96
18837015--18837109	33	2.9	33	85	3	138	28	24	24	23	2.00
18837220--18837345	33	3.8	33	79	0	135	28	26	20	23	1.99
18837254--18837378	66	1.9	66	80	6	146	28	26	19	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18847632--18847666	6	5.8	6	93	0	61	65	31	0	2	1.07
18853669--18853708	20	2.1	19	86	13	55	32	0	2	65	1.06
18853732--18853784	21	2.6	20	85	11	72	58	3	0	37	1.16
18870962--18871014	24	2.2	24	89	0	79	66	0	1	32	1.03
18870958--18871022	12	5.4	12	73	15	55	64	0	1	33	1.03
18873291--18873394	18	5.9	18	76	6	106	28	4	34	31	1.78
18876759--18877700	495	1.9	492	89	3	1466	47	9	2	40	1.51
18880671--18880795	56	2.3	53	80	13	130	21	1	31	45	1.61
18881438--18881481	10	4.5	10	80	5	54	31	4	0	63	1.14
18883065--18883123	25	2.5	25	82	15	72	1	6	6	84	0.83
18883065--18883124	26	2.5	26	81	10	74	1	6	6	85	0.82
18883390--18883470	22	3.6	23	81	3	85	37	11	16	35	1.84
18883429--18883480	22	2.3	23	90	3	79	30	15	19	34	1.93
18883567--18883623	23	2.5	23	75	13	64	36	14	14	35	1.86
18883567--18883648	22	3.7	22	76	9	76	35	13	17	34	1.88
18883351--18883770	171	2.4	170	82	3	468	35	11	17	35	1.86
18883589--18884018	149	2.9	147	79	4	447	35	14	16	33	1.89
18883875--18883939	22	3.0	22	77	8	78	33	12	16	36	1.87
18884395--18884478	29	3.0	29	84	8	104	27	14	20	38	1.91
18886587--18886613	14	1.9	14	100	0	54	51	0	7	40	1.30
18893138--18893228	16	5.8	16	72	14	73	23	1	28	47	1.59
18893310--18893383	15	4.9	15	75	9	69	28	2	20	48	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18893308--18893367	30	2.0	30	87	12	88	28	1	20	50	1.58
18893308--18893383	30	2.5	30	81	14	84	28	2	21	47	1.64
18893429--18893471	19	2.3	19	83	0	50	46	9	0	44	1.35
18893535--18893615	3	27.3	3	86	9	96	25	0	3	70	1.04
18893537--18893630	27	3.5	27	73	18	88	25	0	4	70	1.05
18893715--18893744	15	1.9	16	93	6	53	16	13	0	70	1.18
18894026--18894072	7	6.9	7	82	4	60	80	0	0	19	0.70
18894034--18894072	20	2.0	20	89	0	60	82	0	0	17	0.68
18894026--18894071	13	3.4	13	85	8	65	80	0	0	19	0.71
18900578--18900609	12	2.8	12	90	9	50	37	0	0	62	0.95
18900784--18900829	20	2.3	20	89	10	69	69	15	0	15	1.19
18901216--18901323	10	10.7	10	75	7	58	36	0	8	54	1.37
18901858--18901900	14	2.9	15	86	10	54	2	18	0	79	0.85
18901855--18901901	23	2.1	22	84	4	58	2	17	0	80	0.80
18902877--18902915	20	2.0	20	89	0	60	10	7	2	79	1.02
18904663--18904699	12	3.2	12	85	11	51	43	0	0	56	0.99
18907076--18907136	32	1.9	32	86	6	88	44	1	8	45	1.43
18924049--18924171	64	1.9	64	96	0	228	30	11	14	43	1.81
18925070--18925111	16	2.7	16	88	3	59	28	0	4	66	1.12
18926978--18927076	41	2.5	40	88	1	135	43	14	15	27	1.85
18927059--18927145	34	2.6	34	87	3	122	39	16	13	31	1.87
18927031--18927521	206	2.4	205	81	6	593	38	14	14	32	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18927441--18927530	39	2.3	39	86	5	119	47	13	13	25	1.79
18929706--18929730	13	1.9	13	100	0	50	16	8	8	68	1.38
18934530--18934595	8	8.2	8	77	14	66	75	0	1	22	0.88
18934526--18934576	11	4.5	11	81	13	68	74	0	0	25	0.82
18934526--18934595	5	14.6	5	76	19	69	75	0	1	22	0.88
18934526--18934595	29	2.5	28	82	13	90	75	0	1	22	0.88
18934526--18934593	13	5.8	12	80	14	72	75	0	1	23	0.89
18934526--18934606	17	4.5	17	75	17	58	74	0	3	22	0.98
18934749--18934790	15	2.9	15	80	16	52	64	0	2	33	1.07
18936833--18936872	9	3.9	10	87	12	55	87	2	10	0	0.63
18940816--18940878	25	2.6	24	76	16	76	73	3	4	19	1.15
18940859--18940900	20	2.1	21	86	8	61	80	0	4	14	0.86
18940814--18940892	14	5.1	14	72	22	61	75	2	3	17	1.06
18941288--18941329	20	2.1	20	86	8	59	57	23	0	19	1.41
18941666--18941764	3	36.0	3	73	18	74	61	1	3	34	1.18
18941681--18941749	13	5.3	12	80	13	50	57	1	4	36	1.27
18941666--18941780	22	4.9	23	69	20	60	60	1	4	33	1.27
18942756--18942844	17	5.2	17	70	12	58	40	12	16	30	1.86
18942729--18942860	68	1.9	68	85	0	183	37	11	17	33	1.85
18942756--18942859	34	3.1	33	75	10	111	39	12	16	31	1.86
18947801--18947878	6	13.0	6	69	15	54	74	2	3	19	1.09
18947812--18947877	23	2.8	24	80	14	84	72	3	4	19	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18948797--18948863	3	23.3	3	82	8	86	62	1	1	34	1.13
18950531--18950637	3	36.3	3	84	10	123	60	2	3	32	1.29
18950647--18950692	17	2.8	17	80	6	51	47	10	2	39	1.51
18950685--18950713	12	2.5	12	94	5	51	55	10	0	34	1.34
18950644--18950772	13	9.5	13	73	14	73	50	12	0	36	1.46
18950680--18950795	28	4.0	30	74	12	109	53	12	0	32	1.45
18955322--18955445	52	2.4	52	83	2	144	37	9	18	34	1.84
18955994--18956032	16	2.4	16	82	0	51	25	5	2	66	1.25
18956051--18956095	17	2.5	19	82	10	58	80	2	2	15	0.92
18959435--18959482	24	2.0	24	100	0	96	41	16	16	25	1.89
18960032--18960159	8	14.9	8	72	19	55	78	6	10	5	1.09
18960092--18960148	7	9.7	6	87	12	59	84	10	0	5	0.77
18960114--18960148	15	2.3	15	95	5	61	91	8	0	0	0.42
18961077--18961135	17	3.4	17	73	2	55	35	11	11	40	1.79
18961042--18961360	86	3.7	86	78	4	275	31	18	10	39	1.84
18961288--18961486	62	3.0	66	84	7	237	31	20	11	36	1.88
18961487--18961531	17	2.6	17	82	0	54	33	22	13	31	1.92
18961603--18961673	35	2.1	34	83	2	88	30	16	9	42	1.81
18961924--18962147	119	1.9	121	86	1	326	18	23	15	42	1.89
18968515--18968567	17	3.2	16	81	7	61	73	3	7	15	1.20
18968795--18968891	51	1.9	51	93	0	167	45	18	13	22	1.84
18969461--18969656	3	67.7	3	68	17	103	57	7	2	33	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18969537--18969600	17	3.8	17	76	16	53	48	12	1	37	1.51
18969588--18969647	31	2.0	30	90	3	93	56	8	1	33	1.39
18973636--18973671	18	2.0	18	100	0	72	66	0	5	27	1.13
18973830--18973892	3	21.0	3	75	12	58	65	0	1	33	1.03
18973828--18973898	15	4.4	15	75	18	63	66	0	1	32	1.01
18973828--18973892	11	6.1	11	73	19	50	64	0	1	33	1.03
18973850--18973919	30	2.4	30	80	7	72	62	1	4	31	1.23
18974041--18974080	14	2.9	14	84	0	53	50	25	2	22	1.62
18980070--18980121	24	2.2	24	86	13	72	59	1	1	36	1.19
18980191--18980272	29	2.8	29	84	1	101	21	42	8	26	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127