genome.fa.s656.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  96  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18050616--18050663	22	2.2	22	92	0	78	75	4	14	6	1.16
18056746--18056782	12	3.0	12	96	4	65	32	8	8	51	1.61
18058091--18058131	21	1.9	22	85	5	57	43	9	7	39	1.65
18075223--18075273	25	2.0	26	88	7	79	19	9	7	62	1.50
18075255--18075462	100	2.0	102	93	2	357	23	15	13	47	1.82
18079498--18079699	101	2.0	101	92	1	334	43	10	15	30	1.81
18083320--18083356	2	18.5	2	88	0	56	45	0	5	48	1.25
18087300--18087324	13	1.9	13	100	0	50	44	16	0	40	1.47
18090852--18090878	7	3.9	7	100	0	54	44	0	0	55	0.99
18090414--18091002	292	2.0	293	86	2	826	36	8	9	46	1.66
18094776--18094821	3	15.3	3	90	0	74	63	0	4	32	1.14
18095539--18095617	20	3.8	22	73	17	62	51	22	0	25	1.48
18095547--18095617	23	3.3	23	77	15	80	52	22	0	25	1.48
18095544--18095640	11	8.6	11	69	20	58	49	22	0	27	1.50
18095566--18095624	30	2.0	30	90	6	93	50	22	0	27	1.49
18098891--18098918	3	9.3	3	100	0	56	64	0	0	35	0.94
18099034--18099082	22	2.2	23	82	10	66	63	0	0	36	0.95
18099034--18099089	11	5.1	11	74	8	51	66	0	0	33	0.92
18099611--18099678	26	2.7	26	80	10	79	50	16	8	25	1.73
18099612--18099679	13	5.4	13	79	11	70	50	14	10	25	1.74
18100798--18100939	75	1.9	74	88	4	214	41	11	12	33	1.80
18101203--18101264	19	3.3	19	75	8	72	45	27	9	17	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18102991--18103017	3	9.0	3	100	0	54	66	0	0	33	0.92
18103899--18103954	22	2.7	21	81	8	62	21	3	5	69	1.24
18104166--18104221	24	2.4	24	78	3	60	48	3	1	46	1.30
18107719--18107748	10	2.9	10	95	5	51	86	0	3	10	0.67
18108911--18109116	86	2.4	87	81	5	242	34	15	12	37	1.85
18109538--18109849	120	2.6	120	75	6	297	17	21	15	44	1.86
18109757--18109975	120	1.8	120	80	5	264	21	22	12	43	1.86
18109779--18110055	120	2.3	118	75	9	256	20	22	12	45	1.84
18110544--18110650	3	38.0	3	78	12	93	33	4	1	59	1.29
18111475--18111522	24	1.9	25	87	8	71	14	6	4	75	1.16
18112322--18112352	15	2.1	15	93	0	53	67	22	0	9	1.19
18112324--18112358	12	2.9	12	86	0	52	68	22	0	8	1.16
18115073--18115123	20	2.5	20	84	9	59	76	1	21	0	0.88
18115678--18115708	16	1.9	16	93	0	53	83	3	12	0	0.75
18115669--18115709	12	3.4	12	86	6	57	82	4	12	0	0.81
18115646--18115727	22	3.8	21	76	13	60	76	3	15	3	1.06
18115668--18115727	17	3.5	16	80	11	57	80	3	15	1	0.93
18117686--18117862	41	4.4	41	75	11	125	38	12	11	37	1.80
18120331--18120502	6	28.7	6	94	0	227	66	18	0	15	1.25
18120630--18120667	4	10.0	4	83	11	53	78	0	0	21	0.74
18120724--18120758	12	2.9	12	86	0	52	28	5	2	62	1.32
18121186--18121264	38	2.1	38	85	4	106	53	18	7	20	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18121241--18121303	19	3.3	18	76	8	63	44	20	9	25	1.82
18123350--18123407	20	2.7	21	84	7	64	65	15	0	18	1.27
18123460--18123577	33	3.8	32	68	20	97	57	21	1	19	1.49
18123450--18123636	59	3.2	59	83	2	234	57	19	1	21	1.49
18129610--18129639	13	2.2	13	94	5	51	76	0	0	23	0.78
18132983--18133126	61	2.3	60	80	8	166	35	9	13	40	1.78
18141426--18141469	23	1.9	23	95	0	79	40	6	20	31	1.79
18141515--18142594	355	3.1	351	83	6	1325	38	14	11	36	1.82
18144864--18144906	21	2.0	21	86	0	59	44	27	16	11	1.82
18151135--18151239	34	3.1	34	72	10	99	38	14	14	33	1.86
18154220--18154498	140	2.0	140	98	0	540	33	15	25	24	1.95
18157030--18157092	29	2.2	28	72	5	65	20	9	9	60	1.56
18193743--18194114	185	2.0	185	94	0	645	45	14	12	27	1.81
18202468--18202679	107	2.0	107	99	0	415	43	9	8	38	1.67
18202611--18202840	79	2.8	85	86	7	355	45	9	8	36	1.68
18202823--18202875	24	2.2	24	86	6	72	54	5	1	37	1.35
18202834--18202990	60	2.5	60	83	8	197	50	12	2	34	1.54
18202754--18202990	61	3.8	60	74	10	226	48	11	5	35	1.62
18202974--18203049	37	2.1	37	87	5	109	40	9	14	35	1.78
18202954--18203147	95	2.0	95	95	2	345	39	11	12	36	1.80
18203069--18203144	37	2.1	37	89	0	116	39	6	15	38	1.74
18205487--18205555	33	2.1	33	100	0	138	37	23	2	36	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18206870--18207080	104	2.0	104	100	0	422	26	27	12	33	1.92
18217279--18217347	3	23.0	3	93	0	120	1	0	30	68	0.99
18217954--18217983	13	2.2	14	94	5	53	73	0	6	20	1.05
18220931--18220960	2	15.0	2	92	0	51	53	0	0	46	1.00
18221265--18221292	3	9.3	3	100	0	56	35	0	0	64	0.94
18227573--18227626	25	2.2	25	80	3	65	72	5	3	18	1.20
18228119--18228191	28	2.7	27	75	10	67	32	2	4	60	1.30
18232185--18232228	13	3.3	13	90	3	61	9	6	2	81	0.94
18232211--18232285	23	3.4	21	78	20	89	30	2	0	66	1.05
18232256--18232325	34	2.0	35	86	2	97	30	2	1	65	1.15
18232348--18232378	15	2.1	14	94	5	53	58	0	0	41	0.98
18234184--18234242	25	2.5	23	74	20	59	52	0	1	45	1.10
18235751--18236066	123	2.6	123	81	2	339	26	33	18	21	1.96
18240628--18240660	17	1.9	17	100	0	66	63	12	0	24	1.28
18246695--18246885	21	9.1	21	72	10	117	35	4	6	53	1.49
18246673--18246885	105	2.0	105	82	10	258	34	4	7	53	1.49
18246775--18246885	43	2.6	42	78	4	107	36	3	5	54	1.41
18248433--18248461	12	2.5	12	94	5	51	37	0	0	62	0.96
18248613--18248710	22	4.5	22	68	14	67	36	5	9	48	1.57
18248734--18249178	22	20.2	22	68	11	142	36	9	5	48	1.59
18248891--18249052	21	7.5	22	70	12	61	38	9	3	47	1.55
18248957--18249121	43	3.8	42	77	12	158	36	7	5	50	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18248985--18249126	44	3.2	44	84	3	196	37	8	5	48	1.57
18249478--18249672	22	8.9	22	73	3	101	40	7	6	46	1.56
18249718--18249768	22	2.3	22	75	0	57	39	0	7	52	1.30
18249842--18249935	11	8.5	11	72	9	75	38	3	1	57	1.22
18249842--18249935	44	2.1	44	82	3	109	38	3	1	57	1.22
18249901--18250017	22	5.5	22	67	19	68	40	4	1	53	1.30
18250447--18250514	27	2.6	25	77	11	73	39	0	0	60	0.97
18250960--18251016	22	2.6	22	80	0	60	38	8	5	47	1.57
18251026--18251080	22	2.5	22	80	11	60	34	5	10	49	1.61
18266312--18266337	11	2.4	11	100	0	52	46	15	0	38	1.46
18268229--18268321	27	3.4	27	72	21	70	52	0	2	45	1.12
18272717--18272802	44	2.0	44	88	0	127	12	9	8	69	1.36
18275704--18275728	12	2.1	12	100	0	50	40	0	24	36	1.55
18277264--18277494	118	1.9	117	82	9	279	35	12	9	43	1.74
18278029--18278057	13	2.1	14	93	6	51	24	0	27	48	1.51
18279087--18279185	30	3.4	28	71	19	78	41	6	16	36	1.73
18284542--18284571	13	2.3	13	94	0	51	6	50	23	20	1.71
18288141--18288206	32	2.1	32	82	5	80	46	15	3	34	1.61
18296957--18296997	3	13.7	3	89	0	64	68	26	0	4	1.10
18296957--18297000	12	3.7	12	96	0	79	68	25	0	6	1.14
18296996--18297030	3	11.7	3	100	0	70	68	0	0	31	0.90
18299578--18299629	27	1.9	27	88	0	77	38	7	7	46	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18300330--18300391	20	3.0	20	80	17	81	74	3	0	22	0.96
18300403--18300446	20	2.3	20	84	7	56	50	4	2	43	1.35
18304334--18304374	21	2.0	21	85	0	55	46	21	12	19	1.82
18307458--18307550	45	2.1	45	100	0	186	24	15	19	40	1.90
18319239--18319280	22	2.0	22	85	4	59	40	4	2	52	1.35
18319351--18319391	20	2.0	20	86	9	57	41	7	0	51	1.30
18320203--18320228	6	4.3	6	100	0	52	50	19	30	0	1.48
18320803--18320836	3	11.7	3	93	6	61	35	0	0	64	0.94
18322744--18322784	19	2.1	20	90	4	66	56	9	4	29	1.53
18322745--18322818	24	3.2	24	68	24	68	58	12	4	25	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127