genome.fa.s656.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  51  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10148634--10148762	35	3.7	34	73	13	93	19	17	10	52	1.73
10151898--10152099	40	4.9	40	72	17	135	51	25	1	21	1.58
10151961--10152018	23	2.5	22	76	15	55	55	29	0	15	1.41
10151918--10152100	16	11.5	15	69	14	84	51	26	1	20	1.57
10151967--10152099	40	3.3	42	79	10	145	51	27	1	20	1.56
10151950--10152099	8	18.8	8	70	15	69	52	27	1	19	1.54
10152088--10152146	15	3.8	16	73	8	59	50	18	1	28	1.56
10152134--10152226	32	2.8	32	82	6	98	49	25	1	23	1.57
10152135--10152193	16	3.6	16	70	19	50	50	30	0	18	1.47
10155505--10155551	18	2.4	21	80	19	57	42	0	0	57	0.98
10157049--10157079	14	2.1	15	94	5	55	67	12	6	12	1.40
10157734--10157767	13	2.6	13	86	13	52	52	0	0	47	1.00
10159443--10159478	18	1.9	18	88	5	54	58	0	2	38	1.13
10160427--10160473	22	2.3	21	85	10	62	46	0	0	53	1.00
10160423--10160470	17	2.8	17	76	17	55	50	0	0	50	1.00
10161024--10161059	14	2.4	16	82	17	51	38	0	0	61	0.96
10161084--10161108	13	1.9	13	100	0	50	16	0	0	84	0.63
10161615--10161658	17	2.5	17	88	3	61	56	2	0	40	1.11
10162283--10162321	12	3.5	11	83	16	53	2	5	2	89	0.63
10162284--10162330	8	5.9	8	82	12	53	4	6	2	87	0.74
10162283--10162321	18	2.2	18	85	0	51	2	5	2	89	0.63
10162817--10162850	16	2.2	16	89	5	52	8	8	0	82	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10163112--10163153	12	3.6	12	83	6	59	42	0	0	57	0.99
10165543--10165573	14	2.2	14	94	0	53	35	9	6	48	1.62
10168237--10168275	16	2.4	17	82	4	53	51	2	0	46	1.14
10168353--10168415	20	3.0	21	84	9	76	41	4	0	53	1.22
10186872--10186930	29	2.0	29	90	0	91	47	0	5	47	1.24
10186871--10186938	29	2.4	28	82	7	84	45	0	4	50	1.22
10187025--10187110	28	3.0	28	78	10	77	45	0	1	53	1.07
10187040--10187114	20	3.9	18	72	17	53	42	0	1	56	1.08
10190474--10190571	10	10.3	10	69	20	59	68	2	6	23	1.23
10190471--10190554	27	3.0	27	87	5	105	69	1	4	25	1.15
10190495--10190584	6	15.3	6	71	13	53	71	2	4	22	1.15
10190471--10190583	36	3.3	36	76	8	110	69	1	5	23	1.18
10190473--10190584	11	9.8	11	69	13	57	70	1	5	22	1.17
10190471--10190577	17	6.6	16	72	12	67	69	1	5	23	1.20
10194075--10194124	24	2.1	24	92	0	82	72	2	6	20	1.16
10194077--10194181	37	3.0	33	77	14	104	67	3	6	21	1.30
10194414--10194617	107	1.9	106	83	1	264	33	21	7	37	1.82
10194849--10194884	9	4.0	9	85	0	54	41	8	2	47	1.48
10194850--10194886	18	2.1	18	94	0	65	37	8	5	48	1.56
10197677--10197702	7	3.7	7	100	0	52	23	0	0	76	0.78
10197760--10197872	34	3.3	32	75	14	91	69	3	7	20	1.28
10198532--10198566	18	1.9	18	94	0	61	42	5	5	45	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10200155--10200195	20	2.1	20	86	4	57	48	17	4	29	1.67
10201427--10201526	29	3.5	29	78	12	82	67	7	5	21	1.34
10201442--10201556	6	18.5	6	66	22	51	70	4	4	20	1.22
10201367--10201555	56	3.3	54	77	13	150	69	6	4	20	1.28
10201456--10201555	27	3.5	28	77	10	96	70	3	5	22	1.21
10201469--10201556	36	2.5	34	77	10	88	69	3	4	22	1.22
10203489--10203685	107	1.8	107	83	2	261	33	20	7	39	1.80
10203912--10203946	18	1.9	18	88	0	52	37	11	5	45	1.64
10205369--10205420	26	2.0	26	81	7	61	36	0	3	59	1.16
10214886--10214920	12	2.8	12	86	4	52	25	0	37	37	1.57
10215046--10215087	16	2.8	15	82	10	59	11	2	38	47	1.53
10215046--10215104	30	2.0	30	83	6	75	18	3	32	45	1.66
10216690--10216728	20	2.0	20	84	0	51	35	15	2	46	1.60
10229216--10229277	32	1.9	32	93	0	106	27	9	24	38	1.86
10233536--10233580	9	4.7	10	81	10	58	64	0	0	35	0.94
10233538--10233580	19	2.3	19	100	0	86	67	0	0	32	0.91
10238533--10238574	6	7.0	6	91	0	57	69	11	14	4	1.34
10239316--10239356	20	2.0	20	86	9	57	17	0	14	68	1.22
10240857--10240899	10	4.3	10	85	5	52	4	6	0	88	0.63
10240857--10240901	15	3.1	15	93	3	74	4	8	0	86	0.69
10241826--10241852	14	1.9	14	100	0	54	29	0	0	70	0.88
10252291--10252316	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10254260--10255176	48	19.8	46	77	7	638	29	11	20	38	1.88
10254308--10255172	93	9.4	90	75	9	483	30	11	19	38	1.88
10254308--10255161	45	18.5	45	77	8	276	30	11	19	38	1.88
10254259--10255172	141	6.6	138	79	5	803	29	11	20	38	1.88
10255324--10255354	10	3.1	10	95	0	53	0	12	0	87	0.55
10256454--10256483	16	1.9	15	93	6	51	90	0	0	10	0.47
10256453--10256482	10	3.0	10	95	0	51	86	0	0	13	0.57
10256627--10256672	18	2.6	18	78	0	56	73	0	0	26	0.83
10260214--10260398	59	3.1	58	84	9	232	36	10	5	47	1.62
10260471--10260537	3	22.7	3	90	3	109	65	0	1	32	1.02
10261425--10261472	25	1.9	25	83	8	62	70	8	4	16	1.27
10261702--10261871	40	4.1	42	75	8	152	46	17	12	23	1.82
10262182--10262265	44	2.0	44	83	4	100	35	17	14	32	1.90
10262303--10262468	79	2.1	81	83	2	210	36	16	10	36	1.83
10262338--10262542	100	2.0	100	93	0	347	35	15	10	39	1.81
10262419--10262496	21	3.8	21	84	3	104	37	11	10	41	1.75
10262479--10262677	66	3.0	66	87	0	299	34	16	14	35	1.88
10262649--10262708	21	2.9	21	100	0	120	33	20	13	33	1.91
10262697--10262726	14	2.1	14	93	0	51	36	16	6	40	1.75
10262732--10262861	21	5.9	21	76	19	104	42	13	6	36	1.72
10262777--10262869	46	2.1	44	91	4	150	45	10	5	38	1.62
10264859--10264909	23	2.5	20	77	20	59	45	17	9	27	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10264867--10264910	23	2.0	23	90	4	72	47	15	9	27	1.76
10265350--10265402	24	2.2	24	93	0	88	28	3	30	37	1.75
10266743--10266852	54	2.0	55	85	5	152	48	7	17	27	1.73
10267912--10268061	61	2.5	59	80	10	178	33	12	6	48	1.66
10267912--10268061	60	2.5	60	80	7	187	33	12	6	48	1.66
10267912--10268094	61	3.0	59	76	14	169	34	10	6	48	1.63
10268109--10268142	5	6.6	5	93	6	59	64	0	0	35	0.94
10268109--10268151	10	4.2	10	88	5	50	67	0	0	32	0.91
10269061--10269099	20	2.0	20	90	10	62	69	10	5	15	1.34
10269633--10269674	21	2.0	21	85	0	57	28	33	4	33	1.78
10269657--10269704	18	2.7	18	83	0	60	39	20	4	35	1.72
10273316--10273346	15	2.1	15	93	0	53	25	0	22	51	1.48
10274166--10274303	61	2.3	61	82	2	161	34	5	21	39	1.75
10273868--10274280	209	2.0	209	81	5	498	38	7	16	36	1.78
10274658--10274694	16	2.5	14	87	12	56	40	0	2	56	1.13
10274859--10275002	60	2.4	61	77	11	161	38	2	20	38	1.65
10275434--10275789	130	2.7	130	81	7	366	39	5	14	39	1.71
10283175--10283405	115	2.0	115	98	0	444	35	25	11	27	1.90
10284742--10284881	69	2.0	69	92	0	235	38	12	7	41	1.71
10285451--10285493	17	2.5	17	100	0	86	48	6	0	44	1.29
10285632--10285691	25	2.3	26	80	11	70	53	1	1	43	1.20
10286398--10286439	21	2.0	20	86	4	57	23	2	0	73	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10290192--10290244	25	2.1	26	96	3	99	52	5	18	22	1.66
10291105--10291147	16	2.8	16	89	3	61	53	0	0	46	1.00
10291184--10291224	21	2.0	21	90	0	64	65	0	2	31	1.05
10292704--10292735	16	1.9	16	93	6	55	34	3	6	56	1.40
10293365--10293402	3	12.7	3	100	0	76	34	0	0	65	0.93
10294796--10294840	23	2.0	23	91	8	74	31	0	2	66	1.04
10294820--10294859	17	2.5	16	88	8	55	27	0	0	72	0.85
10295604--10295655	28	2.0	27	81	11	63	17	0	30	51	1.45
10296364--10296404	19	2.0	21	86	9	59	63	7	7	21	1.45
10296392--10296433	13	3.2	13	83	6	50	83	2	9	4	0.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127