genome.fa.s656.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  14  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3301736--3301779	22	2.0	23	86	4	63	45	6	2	45	1.42
3306427--3306487	32	1.9	32	93	0	104	34	11	13	40	1.80
3306428--3306501	32	2.3	32	86	2	96	32	9	14	43	1.78
3314093--3314164	3	24.3	3	86	8	103	33	1	1	63	1.11
3314899--3314979	13	6.3	13	75	12	60	20	1	4	72	1.10
3314922--3314966	7	6.9	7	80	10	51	26	0	2	71	0.98
3315044--3315117	36	2.1	36	82	10	89	64	4	4	27	1.29
3320660--3320798	54	2.5	55	93	3	228	16	20	18	43	1.87
3320631--3320817	54	3.4	55	81	7	195	18	21	15	43	1.87
3321058--3321140	18	4.3	19	76	16	82	38	1	8	51	1.40
3321058--3321170	18	6.3	17	68	13	59	36	2	8	52	1.47
3322389--3322422	17	1.9	18	94	5	61	58	8	2	29	1.43
3322365--3322535	74	2.3	73	90	3	272	47	9	7	35	1.63
3322463--3322496	17	1.9	18	94	5	61	58	8	2	29	1.43
3323822--3323854	15	2.3	15	89	5	50	33	0	0	66	0.92
3323844--3323905	18	3.3	18	76	10	61	46	0	3	50	1.17
3329590--3329630	21	2.0	21	85	9	57	46	7	7	39	1.60
3331366--3331486	61	2.1	60	87	9	180	30	9	4	55	1.52
3335718--3335769	23	2.3	23	81	15	65	46	0	1	51	1.12
3338176--3338215	18	2.2	18	86	8	55	52	0	0	47	1.00
3338188--3338222	18	1.9	18	94	0	61	54	0	0	45	0.99
3345849--3345889	21	2.0	20	85	9	55	63	2	0	34	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3360003--3360065	2	31.5	2	100	0	126	49	0	50	0	1.00
3363113--3363165	16	3.3	15	73	21	54	15	11	7	66	1.44
3375862--3375904	4	10.8	4	94	0	50	48	9	0	41	1.35
3375863--3375904	12	3.5	12	86	0	57	50	9	0	40	1.35
3376323--3376349	2	13.5	2	100	0	54	48	0	0	51	1.00
3376903--3376999	47	2.1	47	90	0	149	31	13	10	44	1.77
3378020--3378052	13	2.3	15	85	15	52	69	0	0	30	0.88
3379141--3379570	48	8.7	48	78	9	361	40	20	11	27	1.87
3379245--3379353	57	1.9	57	92	0	182	40	19	12	27	1.88
3379296--3379570	143	1.9	144	85	5	387	41	19	10	28	1.85
3379189--3379571	95	3.9	94	79	7	336	40	20	11	27	1.86
3379988--3380113	57	2.2	56	84	1	153	49	19	10	21	1.77
3380135--3380383	97	2.5	97	80	5	270	43	19	12	24	1.86
3380531--3380590	30	2.0	30	100	0	120	36	13	10	40	1.78
3380809--3380906	34	2.9	34	81	0	124	36	12	14	36	1.83
3381721--3381763	18	2.4	18	96	0	77	25	11	18	44	1.84
3382507--3382535	10	2.7	11	94	5	51	0	17	0	82	0.66
3385453--3385478	5	5.2	5	100	0	52	0	0	19	80	0.71
3387232--3387266	11	3.1	11	87	4	52	57	2	0	40	1.14
3389471--3389514	2	22.0	2	100	0	88	0	50	0	50	1.00
3390252--3390288	7	5.0	7	87	12	56	45	0	0	54	1.00
3391245--3391287	22	1.9	23	85	4	61	39	2	0	58	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3391947--3391987	15	2.5	17	81	18	52	53	0	2	43	1.13
3393391--3393452	8	7.4	9	75	21	55	30	0	20	48	1.50
3393367--3393437	34	2.1	34	82	10	83	29	1	21	47	1.59
3393382--3393452	25	2.9	24	77	10	72	30	0	21	47	1.51
3393391--3393526	17	8.2	17	64	14	54	33	0	19	46	1.55
3396039--3396084	2	24.5	2	82	12	53	54	2	0	43	1.12
3396139--3396192	21	2.4	23	87	9	76	44	1	5	48	1.37
3398347--3398376	10	3.1	10	95	4	53	36	0	0	63	0.95
3402297--3402353	2	28.5	2	81	0	69	49	8	0	42	1.34
3402297--3402353	26	2.2	26	96	0	105	49	8	0	42	1.34
3406111--3406154	22	2.0	22	86	4	63	13	6	4	75	1.17
3407271--3407426	52	3.0	52	84	3	181	42	7	21	28	1.78
3408751--3408780	2	15.0	2	100	0	60	0	50	0	50	1.00
3410151--3410215	18	3.5	19	75	10	53	38	1	3	56	1.24
3410548--3410590	22	1.9	23	85	4	61	41	2	0	55	1.12
3412472--3412517	24	1.9	24	82	8	58	58	4	6	30	1.43
3415863--3415892	11	2.6	12	89	10	53	53	0	0	46	1.00
3422686--3422766	41	2.0	40	88	6	121	37	14	8	39	1.77
3422962--3423002	22	1.9	21	90	5	64	41	4	0	53	1.22
3426997--3427026	2	15.0	2	100	0	60	50	0	0	50	1.00
3428524--3428567	20	2.3	19	88	11	63	47	0	0	52	1.00
3428509--3428568	25	2.4	27	72	16	65	45	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3430074--3430164	31	3.0	30	75	16	89	53	1	1	43	1.15
3432917--3432958	2	21.0	2	100	0	84	50	0	50	0	1.00
3437976--3438015	11	3.6	11	79	0	53	17	0	30	52	1.45
3438040--3438164	52	2.4	52	86	0	169	46	8	16	28	1.76
3438172--3438352	89	2.0	89	89	0	272	37	3	28	30	1.75
3439282--3439438	52	3.0	52	81	3	174	45	7	17	29	1.75
3445905--3445955	20	2.5	20	90	9	77	64	0	1	33	1.05
3445905--3445964	20	2.9	20	80	14	68	63	0	1	35	1.05
3446358--3446400	21	2.0	21	95	0	77	18	34	4	41	1.71
3449459--3449483	4	6.2	4	100	0	50	76	0	0	24	0.80
3450211--3450252	18	2.2	20	83	12	52	59	0	0	40	0.97
3450211--3450253	19	2.1	21	83	8	54	60	0	0	39	0.97
3451785--3451835	15	3.2	16	75	10	52	41	0	0	58	0.98
3451770--3451817	15	3.3	15	77	14	55	45	0	0	54	0.99
3453003--3453071	22	3.1	21	72	6	66	55	1	1	42	1.18
3460223--3460267	19	2.4	19	92	0	72	8	15	55	20	1.66
3460588--3460683	38	2.6	39	80	8	119	43	14	21	19	1.87
3460815--3460909	34	2.7	35	77	9	106	51	11	20	16	1.75
3460853--3461596	171	4.3	171	84	2	875	45	11	19	22	1.83
3475258--3477880	654	4.0	654	91	2	3914	24	15	22	37	1.93
3477538--3477582	23	2.0	23	87	12	58	26	0	0	73	0.84
3477538--3477582	22	2.0	23	91	4	74	26	0	0	73	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3482143--3482185	19	2.4	18	88	7	61	39	4	41	13	1.66
3483339--3483390	18	2.9	17	75	8	50	40	13	1	44	1.55
3490332--3490408	15	5.3	15	68	12	61	61	0	2	36	1.10
3490332--3490408	29	2.7	29	80	9	95	61	0	2	36	1.10
3490507--3490578	28	2.6	25	76	20	63	52	2	0	44	1.15
3499340--3499463	66	1.9	66	86	3	178	37	20	15	26	1.93
3518511--3518551	21	1.9	22	85	5	57	48	4	2	43	1.37
3519575--3519599	3	8.3	3	100	0	50	68	0	0	32	0.90
3519878--3519902	2	12.5	2	100	0	50	0	52	0	48	1.00
3521111--3521450	170	2.0	171	90	3	542	29	14	21	34	1.93
3523576--3523647	38	1.9	37	85	2	99	31	12	13	41	1.82
3523651--3523691	18	2.3	18	87	8	57	48	0	0	51	1.00
3523937--3523989	4	13.2	4	79	0	61	67	5	1	24	1.22
3525089--3525150	20	3.0	21	73	20	58	43	16	11	29	1.82
3525233--3525403	18	9.7	18	71	14	90	45	10	12	31	1.76
3525233--3525289	16	3.5	16	81	15	64	49	10	10	29	1.71
3525228--3525293	15	3.9	17	74	18	57	48	12	9	30	1.71
3525224--3525504	36	7.8	36	68	14	107	48	11	10	29	1.73
3525398--3525490	19	5.0	19	75	3	73	53	15	7	23	1.67
3525339--3525594	37	7.0	37	70	12	136	48	10	9	30	1.70
3525570--3525626	29	2.0	28	83	10	71	47	10	10	31	1.72
3525824--3526001	43	4.1	43	71	7	121	46	16	8	28	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3527437--3527480	3	14.7	3	95	0	79	65	2	0	31	1.05
3528527--3528557	15	2.1	15	100	0	62	25	16	38	19	1.92
3531462--3531511	20	2.4	21	80	12	59	36	2	6	56	1.36
3540452--3540520	31	2.2	31	97	0	129	68	5	13	13	1.38
3541158--3541194	18	2.1	18	100	0	74	67	5	0	27	1.12
3543033--3543077	20	2.2	20	84	7	56	17	2	0	80	0.82
3543264--3543289	13	2.0	13	100	0	52	23	0	7	69	1.14
3548757--3548783	8	3.4	8	100	0	54	59	0	0	40	0.98
3549505--3549582	33	2.4	31	81	8	84	42	0	7	50	1.31
3552985--3553014	6	5.0	6	95	0	51	13	16	36	33	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127