genome.fa.s656.2.7.7.80.10.50.1000.79.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  79  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15204464--15204504	14	3.0	14	82	13	50	56	9	0	34	1.32
15205171--15205218	24	2.0	25	87	4	71	54	16	4	25	1.60
15205905--15206200	66	4.6	66	75	11	190	39	10	10	39	1.74
15205935--15206216	63	4.4	62	74	15	191	39	9	9	41	1.70
15207009--15207050	18	2.4	19	84	11	54	66	0	2	30	1.04
15209108--15209168	30	2.0	30	100	0	122	37	16	9	36	1.82
15211128--15211248	35	3.5	34	78	8	127	34	13	15	36	1.87
15211567--15211608	16	2.7	16	77	3	50	54	9	0	35	1.33
15211586--15211673	46	1.9	46	83	0	113	39	11	6	42	1.68
15211585--15211682	46	2.1	46	79	3	108	40	11	7	40	1.68
15213539--15213578	19	2.0	22	85	14	59	45	5	5	45	1.47
15214608--15214778	24	6.9	24	69	17	82	18	3	30	46	1.66
15214598--15214660	24	2.6	23	78	14	65	17	3	31	47	1.63
15214598--15214713	50	2.4	49	78	7	128	18	4	34	42	1.71
15214707--15214778	25	2.8	25	77	10	74	19	1	26	52	1.54
15217083--15217124	18	2.3	19	87	4	59	35	4	14	45	1.66
15217807--15217846	5	7.6	5	86	10	53	62	5	0	32	1.17
15220559--15220588	2	15.0	2	92	0	51	46	0	3	50	1.18
15221453--15221533	39	2.1	39	95	0	144	46	12	13	27	1.79
15224155--15224217	25	2.5	27	77	12	71	46	3	11	39	1.55
15224161--15224218	26	2.3	23	80	13	62	44	3	10	41	1.55
15228161--15228203	10	4.3	10	82	8	52	86	2	9	2	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15228577--15228641	8	7.8	8	79	16	60	81	0	9	9	0.87
15228931--15229037	52	2.1	52	100	0	214	17	13	16	52	1.75
15229831--15230088	21	11.7	20	66	23	101	37	8	14	38	1.78
15229890--15230090	21	8.8	25	69	19	138	39	8	13	38	1.75
15229826--15230090	46	5.9	46	81	7	305	37	9	14	38	1.78
15229873--15230090	89	2.4	92	86	5	327	39	7	13	38	1.73
15232016--15232078	15	4.4	15	75	18	53	55	4	0	39	1.21
15232023--15232076	14	3.9	13	79	18	56	59	5	0	35	1.21
15233625--15233680	14	3.9	14	77	15	60	53	7	8	30	1.59
15233701--15233734	16	2.1	17	88	5	52	70	14	0	14	1.17
15234904--15234934	7	4.4	7	91	0	53	80	3	0	16	0.83
15235543--15235600	20	2.9	20	75	7	55	77	1	3	17	0.99
15236064--15236095	10	3.4	10	83	16	50	50	0	6	43	1.27
15236064--15236110	18	2.6	18	93	3	76	53	0	8	38	1.32
15236458--15236577	45	2.7	45	81	2	125	45	12	5	37	1.64
15236500--15236627	43	2.9	43	83	2	130	45	10	7	36	1.67
15236671--15236793	49	2.5	48	80	2	129	44	12	13	29	1.80
15236687--15236794	49	2.2	49	83	4	130	45	13	11	29	1.79
15237350--15237427	14	5.1	14	69	20	50	53	12	6	26	1.62
15237328--15237455	50	2.5	50	86	9	172	55	10	5	28	1.56
15237385--15237449	34	1.9	34	87	6	96	52	10	6	30	1.61
15237479--15237518	15	2.7	15	88	7	55	57	10	5	27	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15237472--15237537	19	3.6	20	76	19	65	57	10	4	27	1.52
15238604--15238647	20	2.2	20	87	0	61	13	29	0	56	1.38
15239128--15239160	15	2.1	16	94	5	59	60	0	0	39	0.97
15240415--15240524	55	2.0	55	92	0	184	17	17	15	50	1.79
15241056--15241176	52	2.5	48	83	6	154	42	14	8	33	1.76
15254911--15254947	17	2.1	18	90	5	58	37	10	0	51	1.37
15259824--15259852	12	2.3	13	94	5	51	79	0	0	20	0.74
15267665--15268425	380	2.0	380	95	0	1353	33	18	18	29	1.95
15270412--15270458	20	2.3	20	96	0	85	85	4	6	4	0.84
15270445--15270476	9	3.6	9	100	0	64	71	0	18	9	1.12
15270819--15270851	15	2.2	15	89	10	50	51	0	15	33	1.43
15271634--15271688	17	3.2	17	76	5	65	34	5	14	45	1.68
15271892--15272115	65	3.4	65	74	7	195	22	21	11	44	1.84
15271958--15272615	65	10.2	65	71	6	273	23	21	11	43	1.84
15271945--15272503	130	4.3	129	74	8	386	22	21	11	43	1.85
15272144--15272698	130	4.3	131	73	9	334	23	21	12	42	1.87
15272408--15272745	65	5.2	65	73	10	219	22	21	12	43	1.86
15273293--15273420	64	2.0	64	93	0	220	39	5	19	35	1.75
15273732--15273774	14	3.1	13	80	12	50	11	4	0	83	0.78
15273739--15273835	14	7.4	12	72	15	50	21	4	1	73	1.07
15273784--15273814	3	10.7	3	93	6	55	29	0	0	70	0.87
15274693--15274750	21	2.8	21	75	0	53	34	3	22	39	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15274833--15274892	30	2.0	30	83	6	77	60	0	0	40	0.97
15275447--15275632	11	16.1	11	65	21	51	55	2	5	37	1.35
15275355--15275517	84	2.0	83	80	3	184	54	0	4	39	1.26
15275506--15275557	15	3.2	16	75	21	54	61	0	3	34	1.14
15275355--15275628	22	12.2	22	68	15	114	55	1	5	37	1.32
15275588--15275645	22	2.8	20	82	12	57	53	3	3	39	1.35
15275725--15275926	22	9.2	21	74	9	118	49	5	5	39	1.49
15275722--15275785	11	5.8	11	72	7	58	50	1	3	45	1.27
15275712--15275948	44	5.4	44	74	4	154	48	5	5	40	1.51
15275735--15275919	66	2.8	65	77	6	192	49	5	5	39	1.49
15275825--15275948	22	5.6	22	78	3	97	48	4	6	40	1.50
15276189--15276321	22	6.0	22	74	6	99	47	6	9	36	1.63
15276246--15276431	22	8.6	21	69	10	72	50	3	7	38	1.47
15276181--15276407	89	2.6	86	81	8	228	48	4	8	38	1.56
15276270--15276424	22	7.2	22	71	11	88	49	3	8	38	1.51
15276351--15276497	22	6.8	20	69	14	62	46	2	12	38	1.53
15276673--15276775	22	4.7	22	71	13	79	46	4	7	40	1.54
15276778--15276843	22	3.0	22	77	0	78	50	1	9	39	1.44
15276735--15276813	34	2.3	34	82	8	90	44	1	11	43	1.48
15276966--15276991	13	2.0	13	100	0	52	69	0	0	30	0.89
15277137--15277188	22	2.4	21	80	3	59	50	13	7	28	1.69
15285751--15285806	29	2.0	28	82	3	67	25	0	12	62	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15286533--15286564	15	2.0	17	88	11	50	6	87	0	6	0.67
15286529--15286565	18	2.2	18	85	9	51	5	86	0	8	0.70
15287338--15287365	2	14.0	2	100	0	56	50	50	0	0	1.00
15289929--15289954	13	2.0	13	100	0	52	30	0	23	46	1.53
15290866--15290935	37	2.0	37	83	8	92	44	1	5	48	1.35
15291084--15291189	41	2.6	41	82	5	135	38	8	6	46	1.61
15291154--15291484	116	2.9	116	77	9	315	35	10	5	48	1.61
15291744--15291799	23	2.4	23	74	11	60	53	3	1	41	1.29
15295395--15295429	11	3.3	10	85	14	52	85	2	8	2	0.79
15295822--15296409	231	2.5	230	78	5	562	39	11	22	25	1.88
15296029--15296409	114	3.3	114	76	8	306	39	11	23	25	1.88
15297200--15297225	10	2.6	10	100	0	52	7	0	0	92	0.39
15306814--15306860	19	2.5	19	86	6	60	70	4	6	19	1.26
15308523--15308554	3	10.7	3	100	0	64	68	0	0	31	0.90
15308604--15308653	26	2.0	25	92	4	82	30	28	22	20	1.98
15316445--15316498	2	27.0	2	100	0	108	0	50	0	50	1.00
15316498--15316529	2	16.0	2	100	0	64	50	0	0	50	1.00
15317620--15317744	34	3.7	34	81	4	144	40	15	12	32	1.85
15317623--15317759	34	4.0	34	76	9	100	37	16	13	32	1.88
15325912--15326169	140	1.8	140	90	0	417	34	13	12	38	1.83
15330247--15330316	35	2.0	35	88	5	106	32	14	15	37	1.88
15332404--15332432	2	14.5	2	100	0	58	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15336856--15336894	20	1.9	21	89	5	62	33	0	2	64	1.08
15337130--15337154	6	4.2	6	100	0	50	48	0	0	52	1.00
15342770--15342805	3	12.0	3	93	0	63	33	33	2	30	1.72
15344487--15344907	145	2.9	144	75	6	404	40	13	13	33	1.82
15347375--15347420	20	2.2	21	84	7	58	26	23	15	34	1.94
15347676--15347726	7	7.4	7	85	14	63	7	0	3	88	0.63
15347795--15347924	68	1.9	68	79	6	147	46	11	23	18	1.81
15348095--15348354	68	3.9	69	73	7	187	48	10	21	18	1.78
15348279--15348360	35	2.4	33	85	4	101	43	12	23	20	1.85
15363654--15363678	13	1.9	13	100	0	50	76	8	16	0	1.02

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127