genome.fa.s656.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  118  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22493259--22493305	15	3.2	15	78	6	60	4	10	6	78	1.06
22493259--22493304	14	3.2	14	81	3	56	4	10	6	78	1.08
22499521--22499553	7	4.9	7	88	3	50	42	0	45	12	1.41
22502979--22503274	97	3.1	96	89	2	452	32	12	21	33	1.91
22507806--22507831	12	2.2	12	100	0	52	30	7	34	26	1.85
22508636--22508714	39	2.0	39	90	4	124	31	11	13	43	1.80
22512410--22512451	9	4.7	9	88	5	50	23	0	7	69	1.13
22512422--22512480	18	3.3	18	78	19	61	27	0	3	69	1.04
22512885--22512938	25	2.2	24	83	6	63	35	5	18	40	1.74
22512947--22513017	31	2.3	31	90	0	106	25	23	25	25	2.00
22513424--22513467	23	1.9	23	85	0	61	6	4	6	81	0.97
22513507--22513545	15	2.8	14	85	11	53	17	2	0	79	0.84
22513558--22513930	62	6.1	61	84	9	458	47	7	11	32	1.68
22514475--22514521	22	2.1	22	96	0	85	63	6	8	21	1.44
22521710--22521739	5	6.0	5	92	0	51	0	20	3	76	0.92
22524226--22524280	28	2.0	28	92	0	92	29	18	5	47	1.71
22525861--22525947	34	2.6	33	77	15	88	41	4	6	47	1.51
22527527--22527562	17	2.1	17	89	0	54	27	11	36	25	1.90
22534363--22534390	14	2.0	14	100	0	56	35	21	28	14	1.92
22539813--22539839	14	1.9	14	100	0	54	37	11	7	44	1.68
22551232--22551275	21	2.1	21	91	0	70	40	11	15	31	1.83
22552148--22552200	22	2.3	23	81	12	65	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22552165--22552210	23	2.0	22	87	4	65	63	0	2	34	1.07
22552187--22552216	15	1.9	16	93	6	53	66	0	6	26	1.16
22552506--22552532	2	13.5	2	100	0	54	51	0	0	48	1.00
22553365--22553419	29	1.9	28	92	3	92	40	1	0	58	1.09
22553369--22553445	29	2.6	28	83	8	82	40	5	1	53	1.32
22553537--22553597	31	2.0	31	84	12	81	62	1	0	36	1.05
22567141--22567206	29	2.3	29	84	5	80	42	16	15	25	1.87
22572916--22572990	22	3.5	20	83	7	87	57	1	0	41	1.07
22572915--22573017	42	2.5	41	76	14	115	56	2	0	40	1.14
22572958--22573030	13	5.5	13	70	15	60	54	2	0	42	1.14
22572914--22573037	53	2.4	50	78	10	133	56	2	0	41	1.12
22573121--22573161	16	2.7	15	85	7	55	48	2	0	48	1.14
22573131--22573194	26	2.5	26	87	9	96	51	1	0	46	1.10
22573124--22573194	9	8.2	9	71	20	53	50	1	0	47	1.09
22575696--22575750	21	2.5	22	77	20	60	43	0	1	54	1.10
22576400--22576456	31	1.9	31	86	10	84	21	1	7	70	1.20
22576436--22576590	4	39.5	4	69	15	76	30	3	1	63	1.23
22576383--22576454	37	2.0	34	84	12	92	19	1	8	70	1.20
22576437--22576556	42	2.9	41	85	12	167	32	2	2	62	1.22
22576483--22576616	42	3.2	42	82	7	139	29	5	0	63	1.23
22576486--22576607	64	1.9	64	80	9	142	29	5	0	63	1.23
22577303--22577336	11	3.1	11	86	0	50	14	32	35	17	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22577478--22577532	28	2.1	26	86	10	76	20	7	0	72	1.07
22577590--22577625	16	2.2	16	90	9	56	44	5	2	47	1.41
22577550--22577895	57	5.8	57	81	11	306	43	6	10	39	1.65
22579982--22580046	24	2.7	23	79	6	76	38	3	7	50	1.47
22580609--22580646	15	2.4	16	82	8	51	47	2	0	50	1.15
22585156--22585185	2	15.0	2	100	0	60	50	0	0	50	1.00
22601142--22601182	19	2.2	19	100	0	82	17	9	17	56	1.67
22608025--22608072	14	3.5	13	80	8	51	72	2	12	12	1.20
22613463--22613513	23	2.2	23	86	10	68	52	0	1	45	1.12
22613690--22613747	18	3.2	18	73	7	64	60	0	0	39	0.97
22618051--22618239	81	2.3	81	80	1	227	44	17	20	17	1.86
22636819--22636870	21	2.4	22	83	3	61	78	3	5	11	1.05
22637081--22637143	20	3.2	20	76	14	60	61	4	0	33	1.17
22637044--22637295	125	2.0	125	92	0	423	50	2	5	42	1.39
22637777--22637811	17	2.1	17	94	0	61	54	2	11	31	1.51
22638387--22638446	30	2.0	31	86	3	86	56	0	1	41	1.09
22638400--22638441	21	2.0	20	86	4	57	52	0	2	45	1.13
22638051--22638724	247	2.8	250	80	9	668	45	3	8	42	1.52
22640494--22640518	7	3.6	7	100	0	50	12	0	0	88	0.53
22640901--22640953	23	2.3	23	77	6	54	35	3	5	54	1.42
22641456--22641486	15	2.0	16	93	6	55	58	0	0	41	0.98
22643121--22643155	17	2.0	18	88	5	54	11	5	8	74	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22644521--22644593	36	2.0	36	86	0	101	38	6	35	19	1.78
22646778--22646855	38	2.1	38	87	4	113	14	20	14	51	1.76
22654924--22654967	22	2.0	22	95	0	79	45	11	9	34	1.72
22665608--22665651	22	2.0	22	86	0	61	45	9	11	34	1.72
22679004--22679050	23	2.0	23	95	0	85	34	4	19	42	1.70
22684523--22684564	22	1.9	22	90	0	66	45	9	11	33	1.73
22696964--22697008	13	3.6	12	82	17	56	53	2	0	44	1.13
22696964--22697008	14	3.5	13	77	22	51	53	2	0	44	1.13
22696965--22697022	25	2.4	25	82	8	66	53	3	0	43	1.17
22697342--22697375	16	2.1	16	88	5	50	67	0	5	26	1.13
22700985--22701028	21	2.1	20	83	8	52	40	0	4	54	1.21
22701025--22701077	18	2.8	18	77	5	52	52	0	0	47	1.00
22721277--22721318	21	2.0	21	95	0	75	30	21	9	38	1.85
22725317--22725379	12	5.2	12	73	22	53	34	0	0	65	0.93
22725333--22725377	22	2.0	22	91	8	72	37	0	0	62	0.96
22725368--22725419	20	2.7	20	82	11	72	53	1	0	44	1.11
22725371--22725416	21	2.2	21	88	3	76	52	2	0	45	1.13
22741799--22741835	2	19.0	2	84	15	51	45	2	0	51	1.15
22742979--22743006	3	9.3	3	100	0	56	35	0	0	64	0.94
22754887--22754924	20	1.9	20	89	10	60	52	0	0	47	1.00
22757434--22757469	3	12.0	3	100	0	72	66	0	0	33	0.92
22757460--22757529	35	1.9	37	82	5	90	70	1	7	21	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22758335--22758362	3	9.3	3	100	0	56	64	0	0	35	0.94
22758567--22758618	17	2.9	18	71	5	52	28	1	0	69	0.99
22768411--22768456	16	2.5	20	86	13	64	13	2	4	80	0.95
22774429--22774515	29	3.0	29	83	11	106	40	3	0	56	1.16
22774429--22774500	29	2.5	28	88	4	108	41	1	0	56	1.07
22774721--22774785	18	3.8	17	78	11	53	40	0	6	53	1.26
22774764--22774811	23	2.1	23	81	11	55	45	0	4	50	1.21
22777018--22777078	29	2.1	29	84	3	79	52	0	0	47	1.00
22784485--22784526	21	2.0	21	85	4	57	50	7	0	42	1.30
22800975--22801000	12	2.2	12	100	0	52	42	7	26	23	1.81
22805634--22805674	5	8.6	5	86	5	50	14	2	2	80	0.92
22811481--22811525	22	2.0	23	86	4	65	55	0	0	44	0.99
22811513--22811560	14	3.1	16	79	14	55	50	0	0	50	1.00
22811550--22811588	19	2.0	20	85	5	53	53	2	0	43	1.14
22811618--22811760	23	6.0	22	69	17	81	38	2	1	58	1.19
22811701--22811781	18	4.6	18	75	14	87	39	0	0	60	0.97
22811728--22811769	12	3.6	11	82	17	50	40	0	0	59	0.97
22811895--22811941	22	2.1	23	92	4	78	36	6	2	55	1.37
22811890--22811947	22	2.4	25	77	19	77	34	5	1	58	1.30
22820577--22820618	20	2.0	20	86	4	57	40	0	4	54	1.21
22821318--22821369	21	2.5	22	90	6	81	51	1	0	46	1.12
22821317--22821369	22	2.5	20	85	14	72	52	1	0	45	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22821781--22821811	4	7.8	4	92	0	53	77	3	0	19	0.90
22822458--22822494	17	2.2	17	100	0	74	24	5	5	64	1.36
22836781--22836822	22	1.9	22	85	9	59	33	14	9	42	1.78
22840746--22840787	22	1.9	22	90	0	66	33	11	9	45	1.73
22844497--22844536	21	1.9	21	85	10	55	32	20	32	15	1.93
22850551--22850575	2	12.5	2	100	0	50	48	0	0	52	1.00
22851668--22851700	4	8.2	4	100	0	66	24	0	24	51	1.48
22861703--22861784	35	2.3	35	85	4	103	39	14	18	28	1.90
22861729--22861808	35	2.3	35	77	0	88	41	17	20	21	1.91
22864584--22864646	27	2.3	27	78	13	74	50	1	0	47	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127