genome.fa.s656.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  98  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18437794--18437827	18	1.9	17	94	5	59	55	0	0	44	0.99
18437769--18437848	14	5.7	14	70	15	58	52	0	0	47	1.00
18437802--18437875	26	2.9	27	84	11	93	51	0	0	48	1.00
18437748--18437875	27	4.6	28	73	18	97	52	0	0	47	1.00
18438232--18438265	11	3.1	11	91	0	50	35	0	0	64	0.94
18439279--18439320	21	2.0	21	86	9	59	33	4	0	61	1.17
18439920--18439980	28	2.2	28	85	5	79	57	1	0	40	1.08
18445445--18445483	20	2.0	20	100	0	78	46	20	5	28	1.72
18445478--18445514	18	2.1	18	94	0	65	35	24	2	37	1.70
18447267--18447448	73	2.5	72	83	4	222	23	23	23	30	1.99
18456367--18456413	12	3.9	12	91	0	67	38	27	8	25	1.85
18457220--18457629	186	2.2	186	81	2	457	41	11	11	34	1.79
18457503--18457765	124	2.1	124	80	2	287	42	9	12	35	1.76
18457316--18457953	310	2.1	311	84	2	818	41	9	12	37	1.75
18457638--18458113	186	2.5	185	82	4	562	40	9	12	37	1.75
18466340--18466414	33	2.3	33	81	4	89	36	10	16	37	1.83
18466799--18467042	135	1.8	135	88	1	373	26	19	22	31	1.98
18468695--18468737	22	2.0	22	86	9	61	20	4	2	72	1.14
18468691--18468743	22	2.4	21	76	17	54	22	3	1	71	1.12
18468754--18468804	15	3.4	16	73	13	54	23	5	0	70	1.09
18469479--18469518	17	2.4	17	91	4	64	82	0	17	0	0.67
18469899--18470199	102	2.9	100	70	17	234	48	6	6	37	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18470035--18470201	54	3.0	54	74	17	155	49	6	6	37	1.55
18470025--18470195	59	3.0	59	78	7	190	49	7	7	36	1.57
18479866--18479913	25	1.9	25	91	0	78	72	0	12	14	1.11
18480995--18481088	32	2.9	32	67	0	80	22	21	9	46	1.79
18481020--18481198	95	1.9	96	84	1	243	21	20	10	47	1.79
18481366--18481465	33	3.1	33	79	4	114	25	15	15	45	1.84
18481728--18481774	15	3.1	15	87	0	67	34	34	12	19	1.89
18481793--18481833	18	2.3	18	87	4	57	29	4	0	65	1.13
18481801--18481834	9	3.8	9	88	0	50	29	2	0	67	1.05
18483280--18483443	55	2.9	55	75	11	152	50	6	7	35	1.56
18485944--18486008	29	2.2	29	86	2	85	33	7	9	49	1.63
18486881--18487109	74	3.0	74	94	3	395	47	10	5	37	1.61
18486875--18487109	80	3.0	80	93	6	428	47	10	5	37	1.60
18487727--18487758	2	16.0	2	100	0	64	50	0	0	50	1.00
18487829--18487892	28	2.3	28	88	0	92	37	20	12	29	1.89
18488092--18488202	20	5.7	19	71	9	73	58	9	0	31	1.35
18488104--18488159	10	5.7	10	74	2	51	55	8	0	35	1.31
18488097--18488244	79	1.9	78	82	10	185	55	8	1	34	1.39
18488275--18488329	20	2.7	20	75	13	58	58	7	1	32	1.36
18488242--18488310	32	2.2	32	81	5	77	60	8	1	28	1.35
18488276--18488318	20	2.2	19	87	4	59	58	6	2	32	1.38
18488361--18488406	19	2.3	20	85	3	67	58	8	0	32	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18488419--18488460	21	2.0	22	85	4	59	66	7	0	26	1.17
18488359--18488499	29	4.9	28	72	17	110	58	7	0	34	1.26
18488370--18488499	19	6.8	18	71	15	75	57	6	0	35	1.25
18488370--18488499	9	13.7	9	71	16	75	57	6	0	35	1.25
18488400--18488508	19	5.6	19	71	15	80	60	5	0	33	1.20
18488785--18488830	19	2.3	20	78	10	51	32	0	4	63	1.14
18489076--18489155	37	2.1	38	81	6	92	38	1	1	58	1.14
18489093--18489206	10	11.9	9	71	15	68	31	1	5	61	1.28
18489097--18489238	19	7.4	19	68	15	78	33	1	6	58	1.32
18489160--18489244	20	4.3	19	75	10	64	34	2	7	56	1.39
18489318--18489363	22	2.2	20	84	7	56	39	2	2	56	1.24
18489371--18489669	10	31.8	9	68	20	107	36	2	4	57	1.30
18489405--18489691	10	30.3	9	69	18	122	36	2	4	56	1.32
18489435--18489665	29	8.2	27	69	20	111	35	1	3	58	1.27
18489527--18489556	15	1.9	16	93	6	53	40	0	0	60	0.97
18489506--18489572	33	2.0	33	85	5	91	43	0	0	56	0.99
18489407--18489686	19	14.8	20	72	14	127	36	2	4	56	1.31
18489500--18489608	42	2.6	42	79	15	118	41	0	0	56	1.11
18489564--18489611	22	2.2	21	85	14	62	37	2	2	58	1.22
18489503--18489685	37	4.9	38	73	14	130	38	1	3	56	1.23
18489626--18489686	9	6.6	9	77	5	50	40	0	4	54	1.22
18489635--18489696	29	2.1	27	85	11	79	35	1	6	56	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18489920--18489952	3	11.0	3	100	0	66	33	0	0	66	0.92
18489954--18490004	17	2.8	17	88	8	66	0	15	1	82	0.76
18489962--18489993	15	2.1	15	94	0	55	0	15	0	84	0.63
18489960--18490005	19	2.4	18	82	10	56	0	15	0	84	0.62
18490823--18490889	5	13.8	5	76	14	52	13	4	1	80	0.93
18490828--18490904	29	2.7	29	84	6	93	12	3	3	79	1.01
18501122--18501495	115	3.3	114	82	5	425	20	22	13	43	1.87
18501446--18501583	56	2.5	56	82	0	168	18	24	16	39	1.91
18501605--18501747	56	2.5	56	84	5	182	20	24	13	40	1.89
18501371--18501755	171	2.3	170	83	3	461	19	23	14	42	1.88
18502041--18502196	3	52.3	3	78	12	110	28	4	3	63	1.29
18502199--18502231	5	6.8	5	86	6	50	0	18	0	81	0.68
18502199--18502231	14	2.3	15	89	5	50	0	18	0	81	0.68
18503051--18503100	11	4.4	11	84	5	64	14	0	2	84	0.72
18503091--18503128	15	2.6	15	87	4	51	23	7	0	68	1.16
18503052--18503114	5	12.6	5	78	9	58	15	1	1	80	0.86
18503183--18503247	13	4.7	13	73	17	51	56	4	1	36	1.29
18503387--18503418	15	2.1	15	94	0	55	84	0	0	15	0.63
18504576--18504600	13	1.9	13	100	0	50	52	8	0	40	1.31
18505420--18505454	4	8.8	4	87	0	52	71	0	5	22	1.07
18505550--18505588	17	2.3	17	95	0	69	20	35	15	28	1.93
18509289--18509356	22	3.1	22	81	8	68	48	2	11	36	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18509624--18509673	22	2.3	22	82	6	57	44	0	10	46	1.37
18509765--18509838	32	2.3	32	80	2	85	48	2	14	33	1.58
18509835--18509891	22	2.6	23	77	8	64	57	1	7	33	1.36
18510030--18510093	22	2.9	22	77	15	69	53	7	6	32	1.55
18510113--18510177	22	3.1	22	72	20	68	46	6	7	40	1.58
18510122--18510162	18	2.3	18	95	0	73	46	7	9	36	1.65
18510148--18510194	22	2.1	22	88	0	67	48	2	8	40	1.45
18510506--18510804	22	13.5	22	70	11	132	46	7	9	36	1.66
18510723--18510814	43	2.1	44	85	2	123	47	5	9	36	1.60
18510832--18510926	44	2.2	44	81	7	104	51	7	9	31	1.62
18510832--18510989	22	7.2	22	68	14	76	47	8	10	34	1.67
18510821--18510989	65	2.6	65	71	10	146	46	7	10	34	1.67
18511025--18511142	11	10.7	11	69	3	58	50	5	4	39	1.46
18510995--18511131	22	6.2	22	75	8	100	46	7	5	40	1.56
18511025--18511133	44	2.5	45	79	7	125	49	6	3	40	1.46
18510990--18511166	22	8.0	22	74	5	97	46	7	6	38	1.60
18511631--18511669	13	2.9	13	88	3	60	28	0	2	69	1.02
18511804--18511842	19	2.0	20	85	5	53	46	5	0	48	1.24
18516770--18516834	28	2.3	29	78	2	69	29	23	1	46	1.61
18523162--18523200	17	2.5	15	88	12	53	0	10	0	89	0.48
18523160--18523199	10	4.1	10	87	3	55	0	12	0	87	0.54
18523160--18523197	19	2.0	20	85	14	55	0	13	0	86	0.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18526448--18526491	22	2.0	22	95	0	79	31	11	13	43	1.80
18528600--18528712	56	2.0	56	89	0	172	47	21	12	18	1.81
18532462--18532513	26	2.0	26	84	3	68	48	1	0	50	1.12
18532463--18532524	26	2.3	26	78	8	63	50	1	1	46	1.20
18535260--18535329	20	3.4	20	67	21	63	21	7	21	50	1.72
18535259--18535343	42	2.0	42	100	0	170	21	7	21	50	1.72
18538494--18538530	2	18.5	2	100	0	74	51	0	0	48	1.00
18558596--18558997	217	1.9	217	83	3	531	30	7	24	37	1.83
18559263--18559318	22	2.6	22	85	2	78	66	0	0	33	0.92
18559263--18559318	21	2.6	22	88	8	80	66	0	0	33	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127