Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  125  of  127  ( 15156 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25203050--25203077
2
14.0
2
100
0
56
50
0
0
50
1.00
25203465--25203508
2
21.5
2
81
4
52
45
2
2
50
1.27
25213627--25213666
20
2.0
20
85
9
55
45
0
0
55
0.99
25213633--25213699
20
3.3
22
72
16
63
44
0
0
55
0.99
25213640--25213698
22
2.5
22
86
8
73
47
0
0
52
1.00
25213635--25213699
21
3.2
20
75
16
62
44
0
0
55
0.99
25228738--25229138
199
2.0
198
98
0
775
23
22
20
33
1.97
25233941--25233979
14
2.6
16
84
12
55
48
0
7
43
1.31
25234461--25234509
24
1.9
24
84
12
62
55
0
10
34
1.34
25241450--25241498
22
2.2
22
100
0
98
32
12
26
28
1.92
25254292--25254317
4
6.5
4
100
0
52
0
23
0
76
0.78
25263506--25263547
14
3.2
13
83
13
50
54
0
2
42
1.13
25269452--25269476
8
3.1
8
100
0
50
0
12
0
88
0.53
25293102--25293126
5
5.0
5
100
0
50
60
0
0
40
0.97
25293199--25293236
18
2.2
18
85
4
51
47
0
0
52
1.00
25293331--25293361
16
1.9
16
93
0
53
29
9
0
61
1.28
25296648--25296783
68
2.0
68
94
2
238
47
12
22
17
1.81
25299918--25299946
7
4.1
7
100
0
58
27
13
13
44
1.82
25301738--25301775
11
3.5
11
86
13
60
50
0
0
50
1.00
25301729--25301816
39
2.1
40
82
14
99
46
3
0
50
1.18
25307200--25307320
30
4.0
30
75
6
111
30
9
31
28
1.89
25319794--25319866
30
2.4
31
80
15
96
53
4
5
36
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25322093--25322118
6
4.3
6
100
0
52
53
15
15
15
1.73
25330905--25330950
21
2.2
20
84
7
56
58
2
0
39
1.10
25330913--25330966
19
2.7
19
86
13
65
62
3
0
33
1.12
25330913--25330967
20
2.6
21
86
11
69
63
3
0
32
1.12
25330992--25331032
19
2.2
19
86
0
55
31
0
2
65
1.05
25349408--25349467
22
2.7
22
75
10
59
36
0
5
58
1.20
25357806--25357851
24
1.9
24
86
8
67
65
10
0
23
1.24
25357807--25357859
24
2.2
24
83
6
63
69
9
0
20
1.15
25357864--25357910
19
2.4
19
79
10
51
55
6
2
36
1.37
25358520--25358576
3
19.0
3
100
0
114
33
0
0
66
0.92
25364586--25364646
29
2.1
29
96
0
113
42
13
19
24
1.87
25371184--25371253
35
2.0
35
94
0
122
38
11
11
38
1.78
25374351--25374379
2
14.5
2
100
0
58
0
48
0
51
1.00
25374620--25374645
3
8.7
3
100
0
52
34
34
30
0
1.58
25376467--25376496
2
15.5
2
93
6
53
50
0
0
50
1.00
25376467--25376495
15
1.9
15
100
0
58
51
0
0
48
1.00
25376468--25376493
13
2.0
13
100
0
52
53
0
0
46
1.00
25384505--25384569
32
2.0
32
93
0
112
53
32
3
10
1.51
25384730--25384835
52
2.0
52
85
0
140
31
18
4
45
1.70
25384860--25384901
11
3.8
11
80
0
57
50
23
0
26
1.50
25384860--25384902
22
2.0
22
90
0
68
48
23
0
27
1.51
25392289--25392351
32
2.1
30
88
8
92
39
9
19
31
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25396729--25396784
28
2.0
28
92
0
94
28
7
5
58
1.46
25404422--25404456
2
17.5
2
100
0
70
51
0
0
48
1.00
25404456--25404487
2
16.0
2
93
0
55
53
0
46
0
1.00
25412136--25412164
14
2.0
15
93
6
51
65
0
0
34
0.93
25414821--25414862
17
2.5
17
80
3
50
57
2
0
40
1.12
25415857--25415905
24
2.0
24
92
0
80
38
0
8
53
1.31
25415912--25415962
19
2.5
21
84
12
63
54
0
0
45
0.99
25429987--25430029
21
2.0
21
86
4
59
9
6
4
79
1.06
25432899--25432939
21
1.9
22
85
14
59
21
17
0
60
1.35
25436541--25436574
16
2.1
16
89
10
52
29
5
17
47
1.71
25442993--25443046
22
2.3
24
87
9
76
44
1
5
48
1.37
25443576--25443601
3
8.7
3
100
0
52
34
0
0
65
0.93
25443986--25444011
2
13.0
2
100
0
52
50
0
0
50
1.00
25444490--25444538
13
4.2
13
75
24
56
53
0
0
46
1.00
25444492--25444533
20
2.0
22
90
9
70
52
0
0
47
1.00
25444552--25444589
17
2.3
16
91
8
67
65
0
0
34
0.93
25444552--25444594
15
2.8
16
86
10
54
62
0
0
37
0.95
25444819--25444911
23
4.1
21
74
20
80
47
2
4
46
1.34
25444823--25444870
24
2.1
22
92
7
78
54
0
2
43
1.12
25444827--25444919
46
2.0
45
81
6
107
45
2
4
48
1.34
25444911--25444956
14
3.5
14
74
17
53
36
0
2
60
1.09
25444904--25444964
25
2.6
24
85
10
81
40
0
1
57
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25478049--25478135
42
2.1
42
100
0
174
50
9
14
25
1.73
25481974--25482004
16
1.9
16
93
0
53
61
3
0
35
1.12
25483947--25484029
28
2.9
29
67
16
75
60
6
8
25
1.49
25483921--25484086
56
3.0
55
80
5
172
50
7
9
32
1.64
25485164--25485356
8
27.3
7
68
21
70
29
4
0
65
1.15
25485231--25485351
27
4.8
25
77
16
124
29
4
0
65
1.17
25485172--25485351
49
3.4
53
80
15
171
30
4
0
64
1.17
25485172--25485351
53
3.4
50
79
16
145
30
4
0
64
1.17
25485181--25485333
80
1.9
80
83
12
199
31
4
0
63
1.19
25485311--25485356
22
2.1
23
95
0
69
28
4
0
67
1.10
25485614--25485658
21
2.1
21
84
8
56
26
0
15
57
1.38
25486173--25486239
12
5.6
12
79
8
66
14
4
1
79
0.97
25486173--25486241
24
2.9
23
85
8
93
14
4
1
79
0.95
25486184--25486239
6
9.3
6
80
7
69
14
1
1
82
0.84
25486260--25486485
59
3.8
59
83
7
273
40
5
12
41
1.67
25490332--25490366
17
2.1
17
100
0
70
28
11
34
25
1.91
25492205--25492233
2
14.5
2
100
0
58
48
0
51
0
1.00
25509833--25509858
2
13.0
2
100
0
52
50
0
0
50
1.00
25511936--25511975
20
2.0
21
85
5
55
15
15
30
40
1.87
25514440--25514473
7
4.7
7
85
7
50
70
0
0
29
0.87
25520989--25521038
25
2.0
25
96
0
91
40
34
4
22
1.72
25522415--25522440
2
13.0
2
100
0
52
50
0
50
0
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25523693--25523717
2
12.5
2
100
0
50
52
0
0
48
1.00
25523717--25523746
2
15.0
2
100
0
60
50
0
50
0
1.00
25525950--25525974
4
6.2
4
100
0
50
76
0
0
24
0.80
25529905--25529943
2
19.5
2
100
0
78
51
0
0
48
1.00
25532457--25532490
17
1.9
18
88
5
52
47
2
0
50
1.16
25535520--25535556
6
6.7
6
93
6
53
0
10
0
89
0.49
25535520--25535555
17
2.2
17
90
9
58
0
11
0
88
0.50
25539439--25539507
7
10.0
7
75
18
65
42
0
2
55
1.15
25539704--25539743
21
1.9
21
89
0
62
45
0
0
55
0.99
25539704--25539741
11
3.5
11
89
7
60
42
0
0
57
0.98
25539706--25539744
16
2.5
16
87
4
53
46
0
0
53
1.00
25541742--25541768
1
27.0
1
100
0
54
0
0
0
100
0.00
25542673--25542700
3
9.3
3
100
0
56
0
32
0
67
0.91
25548147--25548193
21
2.1
21
88
7
67
53
0
4
42
1.20
25548146--25548394
52
4.7
52
70
21
142
55
1
2
40
1.21
25548194--25548254
18
2.9
23
75
20
62
57
1
1
39
1.18
25548144--25548389
41
6.2
38
74
19
170
56
1
2
40
1.21
25548144--25548394
79
3.2
79
81
10
266
55
1
1
40
1.21
25548144--25548394
38
6.3
39
74
20
202
55
1
1
40
1.21
25548147--25548231
34
2.4
35
79
15
77
55
1
3
40
1.25
25548183--25548407
84
2.8
79
74
16
214
57
1
1
39
1.20
25548208--25548401
16
12.0
15
70
17
50
56
1
2
39
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25548362--25548407
23
2.0
23
83
8
58
60
0
4
34
1.16
25548480--25548520
16
2.7
15
88
7
64
48
0
0
51
1.00
25548483--25548530
9
5.4
9
78
14
55
50
0
0
50
1.00
25548483--25548553
25
2.8
26
87
4
92
46
2
0
50
1.16
25563394--25563434
21
2.0
21
85
0
55
51
21
9
17
1.74
25566157--25566186
2
15.5
2
93
6
53
50
0
0
50
1.00
25575066--25575128
31
2.0
31
93
0
108
33
14
15
36
1.88
25598962--25599013
26
2.0
26
100
0
104
46
7
19
26
1.77
25601447--25601473
2
13.5
2
100
0
54
51
0
0
48
1.00
25606584--25606609
5
5.2
5
100
0
52
19
19
42
19
1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127