genome.fa.s656.2.7.7.80.10.50.1000.77.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  77  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14649929--14650568	326	2.0	327	81	4	754	41	8	10	40	1.70
14650228--14650787	182	3.1	182	78	6	480	41	9	9	39	1.70
14650276--14651073	362	2.2	362	78	6	796	41	8	10	39	1.70
14650280--14651073	180	4.4	182	76	6	492	41	8	10	39	1.70
14651106--14654168	181	17.1	180	76	7	2292	41	8	9	41	1.67
14651084--14656439	361	15.0	358	74	8	2618	40	8	9	41	1.67
14651106--14656448	538	10.0	537	74	8	2797	40	8	9	41	1.67
14654012--14654325	156	2.0	158	83	2	391	38	9	7	43	1.66
14654182--14655221	358	2.9	362	76	7	790	38	8	9	42	1.69
14654197--14656448	181	12.5	180	74	7	1426	40	7	9	42	1.67
14654677--14656440	358	4.9	352	75	7	1264	40	7	9	42	1.66
14656343--14656384	19	2.1	21	82	8	52	42	7	9	40	1.65
14658389--14658900	177	2.8	181	78	6	533	42	7	9	40	1.66
14658405--14659400	527	1.9	526	80	4	1170	42	7	9	40	1.66
14658918--14660752	181	10.3	179	73	9	1039	40	7	9	41	1.67
14660756--14661708	181	5.3	181	78	8	781	41	8	9	41	1.67
14661045--14661748	358	2.0	359	80	6	793	41	7	9	41	1.65
14663442--14663524	43	1.9	43	90	4	132	33	32	2	31	1.71
14670383--14674272	361	10.8	359	76	7	2930	40	8	9	42	1.66
14670371--14674272	181	21.7	180	75	8	2850	40	8	9	42	1.66
14673989--14674027	20	2.1	19	85	9	53	35	2	2	58	1.25
14674803--14675251	183	2.5	180	76	10	443	39	8	9	42	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14675256--14675288	17	1.9	17	100	0	66	42	0	15	42	1.46
14675445--14675495	18	2.9	17	77	19	52	47	7	5	39	1.57
14674688--14676599	180	10.5	181	75	7	1439	40	8	9	41	1.68
14674723--14676580	361	5.1	357	76	8	1370	40	8	9	41	1.68
14676456--14676737	139	2.0	140	84	2	370	47	7	7	37	1.60
14676594--14676976	177	2.1	179	78	4	398	42	7	8	42	1.63
14677206--14677585	182	2.1	181	83	1	474	38	9	9	42	1.71
14676668--14677582	471	2.0	466	81	4	1088	40	8	9	40	1.68
14677608--14682102	535	8.4	535	91	1	6589	39	15	11	33	1.83
14681935--14682314	187	2.0	189	93	1	656	37	14	11	36	1.82
14682124--14685282	533	5.9	535	87	2	4516	39	16	10	32	1.83
14686309--14686457	75	2.0	75	89	0	226	24	34	21	19	1.96
14689191--14689244	19	2.7	19	82	5	63	66	5	0	27	1.13
14689665--14689809	73	2.0	73	90	2	229	19	21	17	42	1.90
14690188--14690214	2	13.5	2	100	0	54	51	0	0	48	1.00
14700294--14700338	23	2.0	23	86	0	63	37	13	4	44	1.64
14705335--14705360	13	2.0	13	100	0	52	30	0	0	69	0.89
14705349--14705388	19	2.0	22	85	14	59	42	0	5	52	1.23
14708830--14708862	14	2.3	15	89	5	50	27	12	15	45	1.81
14708978--14709013	3	12.0	3	100	0	72	33	0	0	66	0.92
14711285--14711329	24	1.9	23	90	4	72	11	6	0	82	0.84
14711592--14711625	13	2.5	14	85	9	52	41	0	2	55	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14711748--14711787	18	2.2	19	86	8	57	57	0	2	40	1.12
14714726--14714761	18	2.0	18	89	10	56	58	22	0	19	1.40
14715131--14717991	715	4.0	715	93	0	4855	34	11	18	35	1.86
14718884--14718944	30	2.0	30	81	15	72	55	0	0	44	0.99
14718922--14718976	22	2.4	23	80	20	62	50	1	0	47	1.11
14718975--14719004	14	2.2	14	94	5	53	66	0	0	33	0.92
14720539--14720583	2	22.5	2	90	0	72	46	2	2	48	1.26
14727421--14727463	18	2.2	20	92	8	72	53	0	0	46	1.00
14727454--14727510	6	10.0	6	75	21	52	66	0	0	33	0.92
14727453--14727510	16	3.4	18	75	22	70	65	0	0	34	0.93
14727457--14727499	17	2.6	16	85	3	59	67	0	0	32	0.91
14727570--14727617	17	2.8	17	77	0	60	31	2	4	62	1.26
14728440--14728481	16	2.5	17	81	11	52	26	2	9	61	1.39
14742135--14742179	21	2.1	21	87	0	63	24	11	40	24	1.87
14746130--14746174	24	1.9	23	86	4	63	28	26	28	15	1.96
14746840--14746960	57	2.1	57	81	0	134	28	14	33	24	1.94
14752522--14752626	45	2.3	45	81	4	113	20	15	31	32	1.94
14761871--14761922	22	2.4	22	100	0	104	13	17	42	26	1.86
14762067--14762160	45	2.1	45	80	4	100	21	17	27	34	1.95
14763317--14763435	45	2.6	45	82	0	139	31	17	27	23	1.97
14788438--14788463	11	2.4	11	100	0	52	34	0	0	65	0.93
14815402--14815455	22	2.5	22	84	0	72	27	38	16	16	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14826320--14826347	14	2.0	14	100	0	56	35	21	21	21	1.96
14827520--14827545	9	2.9	9	100	0	52	7	23	34	34	1.83
14839509--14839569	27	2.3	27	82	2	70	27	9	1	60	1.38
14841117--14841182	24	2.8	24	75	9	71	33	33	15	18	1.92
14843673--14843715	22	2.0	22	90	0	68	30	44	6	18	1.76
14847584--14847638	22	2.5	22	81	0	65	21	41	18	18	1.90
14848249--14848299	22	2.3	22	89	0	75	23	33	17	25	1.96
14863160--14864486	464	2.8	465	80	5	1313	23	30	24	21	1.99
14877622--14877681	27	2.3	27	82	8	70	23	6	8	61	1.48
14882887--14882938	22	2.4	22	84	9	70	28	42	15	13	1.85
14885884--14885920	17	2.2	17	95	0	65	13	32	27	27	1.94
14892614--14892673	26	2.3	26	94	0	111	25	30	21	23	1.99
14893441--14893488	22	2.2	22	84	0	60	27	39	14	18	1.90
14894271--14894317	11	4.3	11	88	0	67	19	29	29	21	1.97
14895271--14895321	22	2.3	21	87	9	75	25	41	15	17	1.89
14899075--14899125	22	2.3	22	86	0	75	27	39	13	19	1.90
14901796--14901855	27	2.3	27	82	8	70	23	3	8	65	1.36
14902584--14902639	22	2.5	22	88	0	76	26	39	16	17	1.91
14903004--14903061	27	2.2	27	84	9	75	25	5	6	62	1.42
14903381--14903411	11	2.8	11	90	0	53	19	16	38	25	1.92
14904571--14904613	22	2.0	22	90	0	68	30	39	6	23	1.81
14906935--14906996	26	2.3	28	80	5	74	25	3	4	66	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14910070--14910122	26	2.1	26	82	3	63	28	3	11	56	1.51
14910940--14911069	45	2.9	44	71	6	118	24	26	25	23	2.00
14910918--14911172	90	2.8	90	85	2	316	25	26	23	24	2.00
14910963--14911103	45	3.1	45	72	8	133	24	26	24	24	2.00
14910963--14911120	45	3.5	45	71	8	124	24	27	24	24	2.00
14914366--14914396	8	3.9	8	100	0	62	64	0	9	25	1.24
14919534--14919566	14	2.4	14	100	0	66	18	42	15	24	1.88
14921634--14921685	7	7.6	7	86	4	79	19	0	36	44	1.51
14921635--14921685	20	2.5	21	90	3	77	19	0	37	43	1.51
14921621--14921685	34	1.9	34	87	6	96	21	1	33	43	1.62
14921621--14921686	14	4.8	14	79	7	55	22	1	33	42	1.63
14933185--14933578	181	2.2	181	79	4	427	41	7	9	42	1.64
14934965--14937946	180	16.7	181	75	7	2056	42	9	7	40	1.66
14934965--14937938	716	4.2	711	76	8	2186	42	9	7	40	1.66
14939300--14939942	180	3.6	178	81	7	685	44	10	6	39	1.64
14939890--14939925	17	2.1	18	89	5	56	58	0	0	41	0.98
14940734--14940774	19	2.1	18	86	13	55	48	7	4	39	1.52
14940716--14940774	20	3.1	19	77	15	59	45	6	3	44	1.47
14941010--14941646	181	3.6	177	80	4	600	42	9	9	38	1.69
14941664--14942411	181	4.2	180	79	7	758	40	8	10	40	1.69
14942681--14945657	181	16.5	179	73	8	1717	41	9	8	40	1.67
14944596--14944628	18	1.9	17	88	11	50	39	6	6	48	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14945658--14947043	181	7.7	179	75	10	908	40	8	9	42	1.67
14945659--14947039	362	3.8	359	76	9	1055	40	8	9	42	1.67
14947215--14947253	21	1.9	21	94	5	71	28	0	7	64	1.21
14947343--14947406	25	2.5	25	87	7	85	56	6	7	29	1.52
14947369--14948378	178	5.6	178	78	5	906	42	7	8	41	1.63
14947369--14948262	355	2.5	354	80	5	980	42	7	8	41	1.62
14950258--14950459	110	1.8	111	81	3	255	41	7	10	40	1.68
14950526--14951030	181	2.8	180	78	4	439	43	9	8	39	1.67
14950351--14951343	361	2.7	362	77	7	908	42	9	7	39	1.67
14950355--14951343	180	5.5	178	75	6	762	42	9	7	39	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127