genome.fa.s656.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  22  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4972115--4972701	42	14.0	42	81	8	570	37	19	15	26	1.92
4972115--4972632	126	4.1	126	86	4	638	37	19	15	26	1.92
4973221--4973279	22	2.7	21	86	5	73	33	20	8	37	1.83
4974386--4974449	19	3.5	19	78	16	64	4	17	1	76	1.03
4974420--4974478	22	2.7	22	78	21	70	8	15	1	74	1.13
4978434--4978765	58	5.7	57	80	7	348	35	13	8	42	1.74
4978436--4978754	173	1.8	173	83	9	427	35	14	8	42	1.75
4978777--4978873	11	8.7	11	79	16	103	78	0	4	17	0.91
4978776--4978869	42	2.3	41	85	10	129	78	0	4	17	0.90
4978777--4978873	37	2.8	36	83	10	112	78	0	4	17	0.91
4978890--4978933	6	7.5	6	97	2	81	68	0	0	31	0.90
4978777--4978873	5	18.6	5	79	14	92	78	0	4	17	0.91
4978779--4978933	9	18.6	9	70	13	84	71	1	3	23	1.10
4978773--4978945	9	18.3	9	73	21	60	72	1	2	23	1.08
4979425--4979466	11	3.5	12	80	9	50	61	14	2	21	1.43
4979426--4979466	13	3.3	13	80	13	50	63	12	2	21	1.40
4979733--4979828	22	4.3	22	80	17	76	71	1	5	21	1.11
4979725--4979889	38	4.4	37	74	13	113	69	1	4	24	1.13
4979735--4979830	16	5.4	17	70	22	63	71	1	5	21	1.11
4979777--4979859	22	3.6	22	82	9	96	74	0	3	21	0.97
4979751--4979859	38	2.8	38	82	12	125	72	0	4	22	1.08
4979762--4979859	19	5.1	19	74	12	83	74	0	4	21	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4981025--4981086	31	2.0	31	96	0	115	45	14	11	29	1.80
4981196--4981474	120	2.3	121	80	9	340	34	8	6	50	1.58
4981468--4981510	18	2.4	18	80	3	52	25	6	0	67	1.15
4984591--4984905	116	2.7	115	91	5	492	42	10	18	28	1.83
4985804--4985831	2	14.0	2	100	0	56	50	0	0	50	1.00
4990971--4991025	27	2.2	25	83	9	67	40	5	20	34	1.75
4991033--4991104	31	2.3	32	81	11	87	26	25	23	25	2.00
4991168--4991219	20	2.6	20	85	11	79	26	25	23	25	2.00
4991707--4992168	59	7.7	58	85	12	582	45	7	13	33	1.71
4991897--4991985	27	3.2	27	62	20	65	41	6	14	37	1.72
4993339--4993394	28	2.0	28	92	0	94	26	5	21	46	1.73
4993865--4993916	24	2.2	24	82	6	61	38	5	3	51	1.44
4994292--4994344	27	1.9	28	88	3	81	58	1	3	35	1.27
4994428--4994468	17	2.4	17	83	4	55	29	7	2	60	1.36
4994506--4994540	16	2.1	18	89	10	56	37	0	17	45	1.48
4996249--4996275	2	13.5	2	100	0	54	0	48	0	51	1.00
4996275--4996321	2	23.5	2	91	0	76	48	2	2	46	1.25
4999976--5000020	22	2.0	22	100	0	90	13	13	31	42	1.82
5002833--5002872	10	4.2	9	96	3	62	50	0	0	50	1.00
5003823--5003890	24	2.8	24	88	0	91	35	0	5	58	1.22
5003921--5003960	19	2.1	19	85	4	53	62	5	2	30	1.29
5010727--5011056	129	2.6	127	79	4	310	45	8	5	40	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5011004--5011056	16	3.4	16	77	15	65	50	9	0	39	1.35
5011622--5011894	73	3.8	71	77	13	263	36	8	4	51	1.52
5011696--5011813	25	4.9	23	71	19	82	39	5	2	52	1.37
5011695--5011787	24	3.9	23	70	23	66	41	4	2	51	1.33
5011616--5011894	144	1.9	143	81	8	316	36	8	4	51	1.52
5013480--5013652	85	2.0	85	98	0	337	41	3	5	50	1.42
5013865--5014081	74	3.0	71	78	9	197	34	8	4	52	1.53
5017303--5017456	83	1.9	83	92	0	263	39	3	6	50	1.44
5018239--5018399	79	2.1	78	95	1	286	44	14	13	27	1.83
5019462--5019688	59	3.8	58	88	6	319	33	12	7	46	1.69
5019462--5019685	62	3.7	62	85	7	316	33	12	6	46	1.68
5019701--5019742	22	1.9	22	85	9	59	71	2	11	14	1.24
5019724--5019847	18	6.8	17	67	23	65	73	3	4	19	1.13
5019724--5019846	17	7.8	16	67	17	60	73	3	4	19	1.14
5019702--5019801	22	4.6	21	70	18	53	74	2	8	16	1.15
5019810--5019851	13	3.2	12	90	6	57	78	2	0	19	0.86
5019810--5019861	27	1.9	27	84	7	70	78	3	0	17	0.89
5020886--5021036	3	47.3	3	72	23	82	63	3	0	32	1.13
5020889--5021036	20	8.0	19	69	23	95	63	4	0	32	1.13
5020969--5021033	4	17.5	4	75	12	50	66	3	0	30	1.07
5020889--5021033	45	3.6	42	70	23	91	63	4	0	32	1.13
5021228--5021321	1	94.0	1	74	0	80	0	0	12	87	0.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5021228--5021321	17	5.7	17	80	17	110	0	0	12	87	0.55
5021229--5021322	31	3.0	31	90	6	145	0	0	13	86	0.58
5021229--5021313	6	14.8	6	79	20	94	0	0	12	87	0.56
5021329--5021540	41	5.1	41	91	2	336	36	24	15	23	1.93
5021330--5021540	81	2.6	81	91	3	323	36	24	15	23	1.93
5022729--5022792	26	2.5	25	78	12	76	4	17	0	78	0.92
5022729--5022792	13	5.0	12	73	21	51	4	17	0	78	0.92
5022729--5022796	23	2.7	25	76	13	68	5	19	0	75	1.01
5024954--5025036	41	2.0	41	95	0	148	18	27	8	45	1.78
5026666--5026829	63	2.7	61	87	3	242	34	14	5	46	1.67
5026845--5026886	22	1.9	22	85	9	59	71	2	11	14	1.24
5026868--5026991	18	6.8	17	68	21	65	73	2	4	20	1.11
5026868--5026990	17	7.8	16	67	17	60	73	2	4	20	1.12
5026846--5026945	22	4.6	21	70	18	53	74	2	8	16	1.15
5026954--5026995	13	3.2	12	90	6	57	78	2	0	19	0.86
5028057--5028183	12	11.3	11	69	20	52	62	4	0	32	1.15
5028151--5028195	16	2.9	16	81	18	60	66	4	0	28	1.11
5036320--5036348	2	14.5	2	100	0	58	48	0	0	51	1.00
5043121--5043179	10	5.9	10	69	15	50	25	0	3	71	1.02
5043124--5043190	34	2.1	34	84	13	90	25	0	4	70	1.06
5043381--5043461	37	2.2	37	88	0	117	17	19	30	32	1.95
5044396--5044437	16	2.8	15	82	10	50	9	4	7	78	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5045928--5046100	90	1.9	91	80	8	201	20	16	12	50	1.77
5046654--5046701	18	2.7	17	77	6	51	75	0	2	22	0.91
5049541--5049585	2	22.5	2	91	8	74	48	2	0	48	1.13
5052001--5052068	32	2.1	32	100	0	136	23	16	8	51	1.72
5057626--5057744	39	2.9	37	73	19	94	29	2	5	63	1.29
5057738--5057803	18	3.8	17	69	11	53	16	1	9	72	1.17
5058379--5058425	19	2.5	19	85	0	67	27	29	19	23	1.98
5058744--5058771	1	28.0	1	100	0	56	0	0	0	100	0.00
5058803--5059124	164	2.0	159	88	6	479	28	15	17	39	1.89
5068220--5068422	62	3.4	57	81	13	232	33	13	8	44	1.75
5068220--5068422	57	3.4	57	83	11	239	33	13	8	44	1.75
5068400--5068445	23	2.0	23	100	0	92	34	13	8	43	1.74
5068344--5068503	81	2.0	81	95	1	286	35	12	7	44	1.71
5068281--5068560	138	2.0	140	90	4	449	36	12	7	43	1.70
5068423--5068636	58	3.7	58	94	1	385	36	12	6	44	1.69
5068423--5068635	115	1.9	115	95	0	390	36	12	6	44	1.69
5068674--5068808	17	8.1	16	72	17	64	74	2	3	18	1.09
5068665--5068737	21	3.3	22	67	27	55	73	1	9	15	1.14
5068674--5068809	9	15.0	9	69	22	63	74	2	3	19	1.10
5069635--5069690	19	3.0	19	76	21	64	67	0	5	26	1.11
5069637--5069690	18	2.9	18	73	21	58	68	0	5	25	1.11
5069745--5069929	14	14.7	12	66	23	55	67	3	2	26	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5069782--5069929	21	7.2	20	66	24	76	67	2	2	27	1.15
5069796--5069929	4	32.8	4	68	19	55	67	2	2	27	1.17
5069768--5069941	86	2.1	82	79	13	185	67	3	1	27	1.16
5075108--5075137	12	2.5	12	100	0	60	50	0	0	50	1.00
5076072--5076784	366	1.9	366	94	0	1266	40	16	13	29	1.87
5080601--5080663	28	2.3	27	82	12	76	65	4	3	26	1.28
5081398--5081443	17	2.7	18	71	25	53	52	4	0	43	1.21
5081517--5081541	12	2.1	12	100	0	50	48	0	0	52	1.00
5081815--5081857	20	2.1	20	86	4	59	20	2	6	69	1.23
5082770--5082837	23	2.8	24	80	10	68	52	1	1	44	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127