genome.fa.s656.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  94  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17667273--17667338	17	4.2	17	70	18	63	78	1	6	13	1.00
17667364--17667393	12	2.6	11	90	10	51	90	3	0	6	0.56
17668560--17668602	19	2.3	19	91	0	68	18	16	27	37	1.92
17668750--17668799	26	1.9	26	91	0	82	42	16	2	40	1.59
17669353--17669392	20	2.0	21	90	5	64	20	25	27	27	1.99
17669488--17669531	10	4.6	10	86	11	65	0	0	11	88	0.51
17669488--17669531	18	2.4	18	96	3	79	0	0	11	88	0.51
17669538--17669830	42	7.0	42	91	1	453	36	22	18	22	1.95
17669538--17669808	83	3.2	83	91	3	445	36	23	17	22	1.95
17669538--17669830	125	2.3	126	91	1	462	36	22	18	22	1.95
17671084--17671163	11	7.6	10	76	10	72	6	15	0	78	0.93
17671080--17671112	12	2.9	12	86	13	52	9	21	0	69	1.15
17671076--17671173	10	9.2	11	75	17	66	7	14	0	78	0.95
17671076--17671173	43	2.3	41	81	13	110	7	14	0	78	0.95
17671076--17671177	21	4.8	21	74	19	79	7	15	0	76	1.00
17671076--17671163	10	8.6	10	77	19	69	6	14	0	78	0.95
17671076--17671174	41	2.3	41	78	13	112	7	15	0	77	0.96
17675047--17675512	59	7.7	59	83	9	523	34	12	7	45	1.70
17675047--17675532	58	8.1	58	81	9	471	34	11	7	45	1.69
17675527--17675568	22	1.9	22	85	9	59	71	2	9	16	1.23
17675528--17675616	16	5.2	17	71	11	58	76	2	6	14	1.09
17675528--17675615	10	8.4	10	74	19	56	76	2	6	14	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17675639--17675681	22	2.0	22	86	9	61	83	4	0	11	0.78
17675550--17675679	14	9.3	13	67	22	52	76	3	3	16	1.09
17677036--17677084	26	1.9	26	91	4	82	40	16	4	38	1.67
17678088--17678188	31	3.3	31	78	5	116	25	22	11	39	1.88
17682673--17683089	209	2.0	209	94	0	737	34	13	15	36	1.87
17687609--17687649	15	2.7	15	84	0	55	17	12	24	46	1.82
17696549--17696601	22	2.4	22	81	18	65	75	11	0	13	1.05
17697489--17697543	11	5.0	11	72	14	51	70	1	3	23	1.12
17697485--17697541	18	3.2	18	75	22	57	70	3	3	22	1.18
17697494--17697555	18	3.4	18	71	10	54	69	1	6	22	1.20
17697935--17698139	44	4.6	44	74	9	164	43	14	11	30	1.80
17699229--17699270	7	6.3	7	84	15	54	0	16	0	83	0.65
17715707--17715751	2	21.5	2	82	8	54	44	2	6	46	1.42
17715707--17715751	19	2.4	19	88	0	63	44	2	6	46	1.42
17715717--17715749	17	1.9	17	93	0	57	45	3	3	48	1.33
17718337--17718369	15	2.2	15	94	0	57	54	9	0	36	1.32
17718623--17719324	231	3.0	223	77	9	646	50	5	10	33	1.59
17719286--17719339	21	2.5	20	82	11	63	57	7	3	31	1.44
17720579--17721384	239	3.4	235	78	7	662	50	6	11	32	1.64
17734926--17734950	13	1.9	13	100	0	50	32	8	8	52	1.60
17736337--17736370	15	2.3	15	89	0	50	67	2	8	20	1.31
17740432--17740469	18	2.1	18	100	0	76	47	15	0	36	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17741068--17741113	24	1.9	24	82	8	58	32	4	0	63	1.14
17743397--17743525	35	3.7	34	74	7	109	47	13	20	18	1.82
17743427--17743525	35	2.9	35	78	1	110	45	13	23	18	1.84
17743546--17743620	35	2.1	35	82	0	87	46	9	21	22	1.79
17743573--17743667	36	2.7	33	78	16	93	46	6	25	22	1.75
17744859--17744903	17	2.8	16	73	6	54	11	11	0	77	0.99
17755506--17755561	10	5.5	10	73	12	51	64	5	1	28	1.26
17755488--17755561	30	2.6	28	79	10	78	64	6	1	27	1.26
17756748--17756789	10	4.1	10	84	6	57	50	2	2	45	1.27
17756726--17756764	19	2.1	19	85	0	51	33	0	5	61	1.18
17756893--17757031	10	14.1	10	70	12	65	37	1	5	56	1.30
17756902--17757031	20	6.7	20	72	7	79	37	1	4	56	1.30
17756920--17757003	38	2.2	38	80	4	98	42	1	4	51	1.30
17761434--17761481	20	2.3	20	85	7	60	33	0	2	64	1.05
17765385--17765426	20	2.1	20	82	8	50	47	4	9	38	1.57
17783970--17784075	33	3.1	34	77	14	110	35	6	5	51	1.52
17785125--17785590	59	7.8	56	84	12	585	33	13	8	45	1.72
17785125--17785590	117	3.9	116	88	8	647	33	13	8	45	1.72
17785483--17785573	27	3.2	27	62	14	65	35	14	6	43	1.71
17785604--17785646	10	4.3	10	83	16	54	79	0	0	20	0.74
17785789--17785813	13	1.9	13	100	0	50	4	32	40	24	1.73
17785970--17786013	19	2.3	18	81	11	52	0	45	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17785968--17786012	20	2.4	19	81	7	56	0	46	0	53	1.00
17786600--17786636	14	2.4	17	86	13	53	75	2	5	16	1.10
17786661--17786747	16	5.6	16	67	21	51	64	8	0	27	1.21
17786809--17786847	20	1.9	21	94	5	71	23	28	30	17	1.97
17786949--17787004	1	56.0	1	85	0	76	0	0	7	92	0.37
17786941--17787004	6	9.6	7	86	10	66	0	0	9	90	0.45
17786941--17787004	26	2.6	25	90	7	103	0	0	9	90	0.45
17787011--17787501	42	12.0	41	90	5	689	37	21	18	23	1.94
17787011--17787501	82	6.0	82	91	6	725	37	21	18	23	1.94
17788760--17788817	12	4.7	12	76	4	53	3	15	1	79	0.95
17790015--17790350	59	5.7	58	87	6	464	33	13	7	44	1.73
17790427--17790500	27	2.8	26	82	15	82	77	4	4	14	1.07
17790518--17790543	5	5.2	5	100	0	52	0	42	38	19	1.51
17790822--17790859	20	1.9	20	88	0	58	26	18	23	31	1.97
17790823--17790867	20	2.3	20	84	3	56	28	22	22	26	1.99
17790954--17791000	19	2.5	19	93	3	78	44	21	8	25	1.80
17791419--17791482	12	5.4	13	70	17	50	68	4	0	26	1.09
17794672--17795129	59	7.9	56	84	10	582	34	12	7	45	1.71
17794674--17795129	116	3.9	116	93	2	738	34	12	7	45	1.70
17795142--17795190	23	2.1	24	84	3	64	75	0	4	20	0.96
17795157--17795251	16	5.8	16	70	11	59	73	6	1	18	1.10
17795208--17795253	24	2.0	23	86	4	65	82	6	0	10	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17796046--17796073	6	4.7	6	100	0	56	85	0	0	14	0.59
17796166--17796202	14	2.4	17	86	13	53	75	2	5	16	1.10
17796221--17796310	13	7.0	14	67	23	56	64	6	0	28	1.19
17796512--17796607	1	96.0	1	80	0	102	2	1	7	89	0.60
17798122--17798154	12	2.8	12	90	4	50	0	9	3	87	0.63
17798122--17798178	11	4.8	11	77	14	60	5	12	1	80	0.95
17798135--17798182	24	2.0	24	91	4	78	8	16	2	72	1.18
17802000--17802463	59	7.8	57	81	12	485	33	12	7	45	1.71
17802001--17802466	116	3.9	116	86	8	618	33	12	7	46	1.70
17802539--17802566	13	2.2	13	100	0	56	78	7	0	14	0.95
17802543--17802588	21	2.2	21	84	0	56	82	8	2	6	0.91
17803486--17803518	14	2.2	16	89	10	52	75	3	6	15	1.11
17803488--17803589	47	2.1	49	82	13	124	64	6	1	26	1.29
17810376--17810639	99	2.7	97	77	3	258	41	18	9	31	1.82
17810453--17810681	99	2.3	99	79	5	232	41	17	8	33	1.79
17821965--17822013	21	2.6	18	78	21	55	51	10	0	38	1.36
17822419--17822451	2	16.5	2	100	0	66	51	0	0	48	1.00
17822602--17822639	19	2.0	20	89	5	60	36	18	10	34	1.85
17830055--17830100	22	2.0	23	87	4	67	47	26	2	23	1.63
17830176--17830217	15	2.9	15	86	10	52	59	28	0	11	1.33
17831909--17832008	35	2.9	35	84	0	137	20	18	11	51	1.76
17834629--17834676	15	3.2	15	82	11	71	47	16	2	33	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17834629--17834686	30	1.9	30	89	0	89	48	18	1	31	1.59
17834737--17834814	8	10.4	7	72	16	50	56	29	0	14	1.38
17834737--17834814	15	5.2	15	81	9	79	56	29	0	14	1.38
17835050--17835083	17	1.9	18	88	5	52	23	5	5	64	1.38
17837163--17837199	18	2.2	18	85	9	51	43	0	2	54	1.14
17839856--17839897	14	3.2	13	87	9	59	0	21	0	78	0.75
17842766--17842824	15	3.9	15	84	2	82	45	0	1	52	1.10
17842830--17842863	17	1.9	18	88	5	52	67	0	2	29	1.05
17843650--17843713	32	2.0	32	84	3	85	20	4	7	67	1.35
17849045--17849079	18	1.9	18	100	0	70	25	28	22	22	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127