genome.fa.s656.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  34  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7050629--7050695	34	2.0	34	82	5	82	35	19	13	31	1.90
7050602--7050712	51	2.2	51	78	1	125	37	17	10	34	1.84
7050691--7050729	17	2.3	17	86	8	53	33	15	10	41	1.81
7050721--7050778	17	3.4	17	82	2	71	39	10	8	41	1.70
7050721--7050843	35	3.5	35	74	10	101	37	10	8	43	1.71
7050721--7050787	17	3.8	18	80	5	66	37	8	10	43	1.71
7050793--7050967	52	3.4	52	78	4	185	34	16	8	40	1.78
7050947--7050993	18	2.6	17	83	6	58	40	14	8	36	1.77
7050831--7050987	52	3.1	52	80	3	149	33	17	9	40	1.82
7050895--7050993	35	2.8	34	72	7	83	36	15	9	39	1.79
7050972--7051098	35	3.6	34	76	7	112	40	14	8	36	1.77
7050986--7051042	17	3.3	18	80	7	64	36	15	10	36	1.82
7050998--7051042	18	2.6	17	85	3	54	35	15	11	37	1.83
7050980--7051119	70	2.0	71	85	4	194	37	12	9	40	1.76
7051002--7051118	35	3.4	33	73	10	99	35	11	10	41	1.76
7051301--7051444	43	3.4	41	77	6	121	25	13	17	43	1.85
7052357--7052397	21	2.0	21	85	9	57	43	7	9	39	1.65
7052774--7052823	4	12.2	4	78	4	55	22	6	2	70	1.20
7052956--7052996	3	13.7	3	100	0	82	65	0	0	34	0.93
7054361--7054458	28	3.4	28	81	5	97	37	2	3	57	1.26
7054421--7054460	16	2.3	19	87	12	59	45	2	0	52	1.14
7054580--7054634	8	7.0	8	78	17	53	40	1	0	58	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7054647--7054699	24	2.3	23	83	3	61	49	0	1	49	1.12
7059045--7059073	14	2.1	14	100	0	58	13	20	20	44	1.85
7062058--7062127	30	2.3	31	80	14	83	45	0	1	52	1.09
7062382--7062447	28	2.3	29	87	10	93	60	3	3	33	1.27
7068373--7068421	23	2.1	24	82	17	59	46	0	2	51	1.12
7070412--7070466	20	2.7	21	83	11	69	78	5	0	16	0.93
7070403--7070464	21	3.0	21	81	13	67	77	4	0	17	0.94
7070405--7070468	25	2.5	26	87	10	87	78	4	0	17	0.92
7071446--7071491	20	2.2	20	85	11	58	67	8	2	21	1.29
7071462--7071499	15	2.6	15	84	16	53	68	5	2	23	1.23
7071454--7071607	10	16.4	9	67	19	52	68	3	3	24	1.22
7071543--7071601	6	9.2	6	78	10	55	76	1	1	20	0.96
7071552--7071596	21	2.1	21	91	0	72	77	2	0	20	0.87
7071849--7071893	16	2.9	15	83	6	63	6	0	37	55	1.26
7072189--7072270	24	3.5	23	76	15	71	59	1	1	37	1.13
7072231--7072274	23	1.9	23	90	0	70	59	0	0	40	0.98
7072234--7072339	39	2.6	42	73	7	101	57	0	1	39	1.16
7075090--7075115	2	13.0	2	100	0	52	50	0	0	50	1.00
7076229--7076273	14	3.1	14	78	15	56	57	0	0	42	0.98
7076231--7076287	29	2.0	29	82	6	71	64	0	0	35	0.93
7080844--7080874	2	15.5	2	100	0	62	48	0	0	51	1.00
7085735--7085806	21	3.6	20	71	19	69	9	6	6	76	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7085733--7085801	22	3.4	21	71	20	74	10	5	7	76	1.14
7085733--7085817	39	2.2	39	89	2	136	11	5	7	75	1.18
7085983--7086085	22	4.7	22	76	9	111	33	11	18	36	1.87
7085978--7086126	44	3.4	44	84	6	171	34	8	19	36	1.83
7086013--7086111	22	4.5	23	77	7	89	34	9	18	38	1.82
7086050--7086127	22	3.5	22	75	13	63	37	5	17	39	1.72
7086221--7086331	22	5.0	22	72	6	91	28	15	25	30	1.96
7086502--7086612	32	3.5	32	76	7	118	20	14	27	36	1.92
7086501--7086661	32	5.1	32	70	8	107	20	14	27	36	1.92
7088566--7088669	51	2.0	51	98	0	199	43	12	15	28	1.83
7091721--7091754	8	4.2	8	84	0	50	8	5	0	85	0.75
7093794--7093818	4	6.2	4	100	0	50	52	0	0	48	1.00
7094152--7094260	54	2.0	54	100	0	218	44	0	7	48	1.30
7094182--7094267	26	3.2	27	69	18	81	43	0	8	48	1.32
7099728--7099792	31	2.1	31	83	11	80	24	18	13	43	1.87
7108012--7108062	16	3.4	16	71	17	56	35	0	13	50	1.42
7114483--7114516	2	17.0	2	100	0	68	50	0	0	50	1.00
7116297--7116376	20	3.8	20	78	14	65	18	2	1	77	0.95
7116297--7116377	26	3.3	25	77	6	67	18	2	1	77	0.94
7116459--7116505	21	2.2	23	78	17	57	34	4	2	59	1.29
7116861--7116893	15	2.1	16	94	5	59	24	9	6	60	1.49
7117418--7117452	4	8.8	4	100	0	70	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7117480--7117564	5	17.8	5	72	22	51	12	3	2	81	0.92
7117479--7117564	10	8.4	10	72	12	68	12	3	2	81	0.92
7117487--7117569	18	4.8	17	80	10	78	13	3	2	80	0.94
7117579--7117798	60	3.7	58	80	5	244	43	6	13	36	1.70
7117584--7117797	120	1.8	119	85	5	308	42	6	14	37	1.70
7119878--7119997	60	2.0	60	93	3	206	40	10	8	40	1.69
7122463--7122503	2	21.0	2	80	14	50	43	4	0	51	1.23
7122463--7122503	11	3.7	11	90	6	57	43	4	0	51	1.23
7126927--7126963	16	2.4	17	86	13	53	18	2	5	72	1.15
7130541--7130575	2	17.5	2	87	0	52	42	0	2	54	1.15
7130541--7130580	14	2.9	14	88	0	53	40	0	7	52	1.30
7130780--7131292	255	2.0	255	97	0	972	37	13	17	31	1.89
7137808--7137957	76	2.0	76	93	0	255	35	14	11	38	1.82
7138608--7138665	23	2.6	25	82	15	65	48	1	3	46	1.29
7138688--7138734	16	2.9	16	78	9	51	42	6	10	40	1.65
7139031--7139086	20	2.8	20	78	10	62	42	0	5	51	1.24
7139195--7139253	19	3.0	19	83	13	75	52	0	0	47	1.00
7139504--7139558	7	7.1	8	80	10	53	65	0	0	34	0.93
7139502--7139546	15	2.9	16	83	9	67	71	0	0	28	0.87
7139686--7139741	25	2.2	25	78	15	62	60	1	1	35	1.17
7139866--7139927	23	2.6	24	80	10	65	56	0	1	41	1.09
7139868--7139947	23	3.3	23	75	8	63	55	0	1	43	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7140587--7140644	28	2.1	28	87	6	84	32	1	0	65	1.03
7140574--7140651	26	2.7	29	73	20	74	30	2	0	66	1.05
7142521--7142550	10	3.1	10	95	4	53	36	0	0	63	0.95
7142523--7142556	10	3.6	9	92	8	50	32	0	2	64	1.08
7144952--7144976	13	1.9	13	100	0	50	24	0	4	72	1.02
7145597--7145698	47	2.2	47	84	6	136	55	8	12	22	1.64
7151981--7152081	8	13.0	8	76	11	95	73	0	14	10	1.15
7153378--7153475	42	2.3	42	87	5	135	24	14	17	43	1.86
7155077--7155120	19	2.4	19	85	7	56	65	0	2	31	1.05
7155805--7155841	17	2.2	17	90	0	56	27	8	21	43	1.80
7157207--7157244	16	2.4	16	90	0	58	44	10	0	44	1.38
7157624--7158005	193	2.0	193	86	4	538	33	11	6	48	1.64
7159030--7159095	24	2.9	23	91	6	100	48	19	22	9	1.77
7162066--7162097	11	2.9	11	95	0	55	0	9	3	87	0.64
7162195--7162237	23	1.9	22	85	4	59	60	0	4	34	1.17
7163046--7163081	13	2.7	13	91	4	54	50	16	8	25	1.73
7167459--7167485	2	13.5	2	100	0	54	0	0	48	51	1.00
7167499--7167562	6	10.5	6	96	1	83	42	57	0	0	0.98
7167499--7167562	18	3.5	18	89	2	92	42	57	0	0	0.98
7170033--7170089	29	2.0	28	83	12	73	63	1	0	35	1.05
7171126--7171154	8	3.8	8	95	4	51	62	0	0	37	0.96
7172893--7172968	6	12.7	6	92	0	107	14	35	5	44	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7173572--7173599	14	2.0	14	100	0	56	78	0	14	7	0.95
7178808--7178845	3	12.7	3	100	0	76	65	0	0	34	0.93
7179040--7179083	22	2.0	22	90	0	70	43	13	9	34	1.76
7179071--7179112	14	2.9	15	80	16	52	54	7	7	30	1.54
7182597--7182659	25	2.5	25	87	5	83	36	17	26	19	1.94
7182724--7182774	25	2.0	26	88	11	79	56	7	17	17	1.63
7182917--7182960	22	2.0	22	86	0	61	45	13	11	29	1.79
7183014--7183054	3	13.7	3	94	0	73	70	0	0	29	0.87
7184424--7184459	18	2.0	18	88	0	54	77	0	8	13	0.98
7184831--7184936	50	2.1	50	92	0	176	47	12	6	33	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127