genome.fa.s656.2.7.7.80.10.50.1000.80.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  80  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15364109--15364143	16	2.2	16	89	0	52	54	14	2	28	1.54
15365578--15365607	15	2.0	15	93	0	51	50	6	13	30	1.67
15369601--15369630	2	15.0	2	100	0	60	50	0	0	50	1.00
15369630--15369654	2	12.5	2	100	0	50	52	0	48	0	1.00
15370133--15370159	4	6.8	4	100	0	54	51	22	0	25	1.48
15370254--15370404	80	1.9	80	80	2	178	40	3	9	45	1.56
15370412--15370526	21	5.5	21	74	6	65	33	7	13	46	1.71
15370856--15370897	22	1.9	22	85	0	57	30	14	2	52	1.54
15370934--15371080	22	6.6	22	73	13	86	41	7	8	42	1.63
15371104--15371214	22	5.0	22	73	8	64	39	10	8	41	1.70
15371201--15371255	22	2.5	21	77	13	58	30	10	10	47	1.73
15371289--15371374	11	7.9	11	67	11	52	38	5	3	52	1.43
15371288--15371647	22	16.3	22	67	12	141	36	7	6	48	1.59
15371535--15371595	11	5.5	11	75	7	52	37	8	3	50	1.48
15371295--15371601	110	2.7	111	75	12	292	36	7	7	48	1.59
15371896--15371938	22	2.0	22	85	0	59	39	11	6	41	1.68
15371905--15371980	22	3.5	22	85	0	80	38	10	5	46	1.61
15373666--15373691	1	26.0	1	100	0	52	100	0	0	0	0.00
15375242--15375288	18	2.7	17	77	12	51	21	2	6	70	1.20
15378008--15378036	12	2.4	12	100	0	58	82	10	0	6	0.83
15378072--15378325	46	5.5	47	80	6	268	48	12	9	29	1.72
15378377--15378508	34	4.1	32	75	9	110	31	12	18	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15378525--15378612	33	2.7	33	81	10	101	35	19	11	34	1.87
15380762--15380804	16	2.7	16	82	7	52	6	20	0	72	1.08
15381248--15381288	9	4.7	9	77	17	50	2	14	0	82	0.76
15381250--15381292	15	2.8	15	82	10	52	2	13	0	83	0.74
15382357--15382411	23	2.4	23	87	6	85	43	0	0	56	0.99
15384489--15384533	24	1.9	24	90	4	74	6	11	4	77	1.09
15390425--15390985	145	3.8	145	77	6	519	42	13	12	31	1.81
15391402--15391431	5	5.8	5	96	4	51	3	0	16	80	0.85
15391887--15392061	35	5.1	35	70	12	119	48	13	20	17	1.81
15391705--15392128	104	4.1	104	77	3	354	50	12	18	18	1.77
15391705--15392128	207	2.0	209	79	4	455	50	12	18	18	1.77
15392069--15392200	70	1.9	70	81	6	160	51	16	14	17	1.77
15392356--15392422	35	1.9	35	84	0	89	49	13	19	17	1.80
15392286--15392474	104	1.8	105	83	1	254	50	12	17	19	1.78
15392356--15392430	35	2.1	35	82	0	87	48	14	20	17	1.82
15392415--15392630	35	6.2	35	68	15	108	52	13	14	19	1.74
15392287--15392511	104	2.2	104	81	1	245	50	13	16	18	1.78
15392624--15392783	35	4.6	35	69	12	96	51	10	16	21	1.75
15392774--15392942	35	4.9	33	70	13	99	48	12	20	18	1.80
15393048--15393250	105	1.9	105	87	0	298	50	12	17	19	1.78
15393048--15393354	105	2.9	105	80	2	287	48	11	19	21	1.80
15393282--15393473	69	2.8	67	79	10	199	47	10	20	21	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15393326--15393436	35	3.2	35	70	5	100	44	14	23	18	1.86
15393226--15393683	173	2.7	172	79	6	401	48	12	19	19	1.80
15392850--15393565	381	1.9	380	81	4	870	48	12	19	19	1.80
15393591--15393691	35	2.9	35	72	11	98	50	12	18	17	1.78
15393594--15393758	70	2.4	70	86	2	224	50	13	16	19	1.78
15394356--15394641	105	2.7	105	82	3	310	48	13	18	19	1.81
15394460--15394635	35	5.0	35	69	15	87	50	15	17	17	1.78
15394681--15394930	104	2.4	105	79	4	256	48	12	19	19	1.80
15394873--15394974	35	3.0	33	71	7	87	50	12	21	15	1.78
15395788--15395899	39	2.8	41	73	5	120	40	11	12	35	1.79
15396089--15396356	101	2.8	93	76	8	257	34	15	17	32	1.91
15396077--15396380	93	3.2	93	74	7	275	34	14	19	31	1.92
15396860--15396953	44	2.1	44	84	0	116	30	9	15	43	1.79
15398724--15398791	24	2.9	22	79	12	73	5	7	4	82	0.95
15398729--15398786	31	1.9	31	85	3	82	5	8	5	81	0.99
15401519--15401776	88	3.0	86	95	2	471	24	24	12	38	1.90
15406828--15407393	145	3.9	142	81	4	544	40	12	13	33	1.82
15406841--15407393	289	1.9	290	80	3	657	39	12	13	33	1.82
15411424--15411493	22	3.2	22	74	8	70	38	4	7	50	1.50
15411635--15411679	23	1.9	24	90	4	74	33	4	2	60	1.29
15411665--15411787	22	5.7	22	70	11	83	40	8	4	46	1.55
15411802--15411892	22	4.2	22	72	9	80	38	8	4	48	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15411921--15411989	22	3.1	22	80	0	75	39	7	5	47	1.55
15411934--15412027	44	2.1	45	82	5	111	34	9	8	47	1.66
15412108--15412326	22	10.3	22	67	15	68	36	6	5	51	1.51
15412243--15412330	40	2.2	40	89	4	133	36	5	4	53	1.45
15412255--15412333	40	2.0	40	94	0	140	34	5	5	55	1.44
15412824--15412883	24	2.5	25	73	7	63	60	3	0	36	1.14
15416467--15416644	51	3.5	49	82	9	205	46	10	3	39	1.56
15418260--15418307	20	2.4	20	86	6	62	70	25	0	4	1.04
15420926--15420961	10	3.5	10	88	7	54	88	5	0	5	0.61
15421205--15421246	18	2.3	18	87	4	57	85	0	9	4	0.72
15420526--15421734	610	2.0	600	95	2	2152	46	8	10	34	1.70
15425867--15425909	15	3.0	14	83	12	52	83	2	11	2	0.83
15426256--15426294	16	2.4	16	86	0	51	84	2	10	2	0.81
15428860--15428960	43	2.3	44	79	14	111	49	4	6	38	1.51
15428857--15429355	22	22.4	22	69	9	143	46	5	7	40	1.56
15429506--15429546	22	2.0	20	86	13	57	48	2	9	39	1.49
15429820--15429982	22	7.4	22	73	8	107	46	4	11	38	1.60
15429864--15429972	44	2.5	44	86	4	139	43	4	11	40	1.62
15429958--15430014	30	1.9	30	88	0	87	49	5	3	42	1.42
15429995--15430092	22	4.5	22	76	1	90	48	5	2	43	1.36
15429964--15430029	30	2.2	30	83	5	80	50	4	3	42	1.38
15429992--15430094	11	9.4	11	69	12	59	48	4	1	44	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15429981--15430197	22	9.9	22	69	5	89	44	6	5	43	1.54
15429995--15430119	44	2.8	44	78	9	121	47	6	3	43	1.45
15430133--15430242	44	2.5	44	83	0	130	45	4	10	40	1.58
15430513--15430575	22	2.9	22	85	2	83	58	6	0	34	1.23
15430590--15430679	21	4.3	21	74	5	74	50	12	6	31	1.66
15430662--15430694	16	2.0	17	88	5	50	57	12	3	27	1.49
15430653--15430704	27	1.9	27	92	0	86	51	11	3	32	1.56
15431036--15431095	22	2.8	21	84	2	75	60	3	3	33	1.30
15431001--15431064	32	2.0	31	81	3	74	60	7	1	29	1.34
15431031--15431199	21	8.0	21	71	7	72	51	9	6	32	1.60
15431182--15431214	16	2.0	17	88	5	50	57	12	3	27	1.49
15431173--15431224	27	1.9	27	92	0	86	51	11	3	32	1.56
15434055--15434122	35	1.9	35	93	0	118	30	4	26	38	1.76
15434551--15435327	85	9.1	85	75	4	465	40	23	14	21	1.90
15434895--15434941	25	1.9	25	86	4	69	36	23	21	19	1.95
15434854--15435304	171	2.6	170	79	4	462	41	23	13	21	1.88
15435523--15435729	85	2.4	84	82	4	236	40	21	14	23	1.91
15435976--15436027	27	1.9	27	84	0	68	30	30	11	26	1.92
15463868--15463907	5	7.0	6	91	8	50	0	12	0	87	0.54
15473809--15473844	13	2.8	13	95	0	63	25	22	11	41	1.86
15479779--15479989	64	3.3	64	71	7	196	35	11	15	38	1.83
15479748--15480080	128	2.6	128	79	7	325	38	11	13	37	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15479748--15480146	64	6.2	64	69	10	184	37	11	13	38	1.80
15479843--15480253	196	2.1	197	87	3	578	37	10	13	37	1.80
15479908--15480318	196	2.1	196	82	4	481	38	11	13	36	1.80
15480063--15480554	267	1.9	262	81	7	609	41	11	10	36	1.76
15480371--15480774	193	2.1	193	84	2	526	39	11	11	36	1.79
15480551--15480860	129	2.4	125	80	6	327	38	11	12	37	1.79
15481213--15481245	17	1.9	17	88	11	50	30	33	0	36	1.58
15481697--15481733	19	1.9	19	88	0	56	81	2	5	10	0.96
15482609--15482673	3	22.3	3	81	12	82	64	1	3	30	1.18
15482902--15482972	25	2.8	26	80	6	74	35	26	28	9	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127