genome.fa.s656.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  122  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23796648--23796691	10	4.5	10	81	16	56	31	0	2	65	1.05
23796713--23796764	21	2.3	23	77	9	63	57	5	0	36	1.23
23812114--23812178	33	1.9	34	81	3	78	53	0	1	44	1.09
23815451--23815497	15	2.9	17	78	15	64	59	0	0	40	0.97
23815451--23815538	15	5.5	15	71	18	63	53	1	2	43	1.20
23815457--23815527	34	2.1	35	81	7	83	54	1	2	40	1.23
23815451--23815545	32	2.9	32	73	13	86	54	2	2	41	1.24
23815556--23815628	27	2.4	31	76	19	82	39	0	1	58	1.06
23815578--23815634	21	2.6	23	83	8	82	42	0	0	57	0.98
23821018--23821059	17	2.5	17	80	3	50	52	0	4	42	1.22
23821526--23821578	22	2.4	22	81	12	63	35	7	0	56	1.28
23837925--23837978	20	2.5	21	73	11	56	51	0	0	48	1.00
23838077--23838113	17	2.2	17	90	0	56	54	2	5	37	1.38
23838319--23838355	18	2.1	18	89	0	56	48	18	2	29	1.62
23842244--23842291	14	3.3	14	85	5	60	52	0	0	47	1.00
23842245--23842298	16	3.4	16	82	12	67	53	0	0	46	1.00
23842270--23842328	19	3.1	19	72	15	59	62	0	0	37	0.95
23842286--23842329	23	1.9	23	82	17	56	63	0	0	36	0.95
23844137--23844166	16	1.9	15	93	6	51	53	6	0	40	1.27
23845252--23845296	19	2.2	21	92	7	76	55	2	0	42	1.12
23845246--23845296	21	2.4	23	75	24	58	56	1	0	41	1.10
23845288--23845330	16	2.7	16	77	0	50	60	2	0	37	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23845316--23845359	19	2.3	19	80	7	54	68	0	0	31	0.90
23866717--23866752	6	6.0	6	93	0	63	16	19	33	30	1.94
23869700--23869798	44	2.2	44	92	0	162	19	21	42	17	1.89
23870064--23870103	20	2.0	20	95	0	71	30	20	12	37	1.89
23873871--23873923	21	2.5	21	85	11	72	37	5	1	54	1.35
23873933--23874008	12	6.2	12	71	14	50	36	3	0	59	1.16
23873935--23873999	26	2.4	27	84	7	78	38	3	0	58	1.14
23873939--23874015	26	3.0	26	80	14	74	40	3	0	55	1.18
23874533--23874628	29	3.3	28	74	11	77	38	2	1	58	1.17
23874534--23874568	17	2.1	17	88	0	52	42	0	0	57	0.99
23874555--23874647	29	3.2	29	84	4	109	38	2	1	58	1.17
23891534--23891558	13	1.9	13	100	0	50	48	0	0	52	1.00
23895755--23895793	19	2.1	19	85	9	53	5	23	0	71	1.05
23898591--23898634	18	2.3	20	85	14	67	47	0	0	52	1.00
23898697--23898752	24	2.3	24	84	6	69	35	3	0	60	1.14
23900293--23900329	19	1.9	19	88	0	56	21	8	0	70	1.13
23900509--23900539	9	3.4	9	90	0	53	67	6	0	25	1.14
23900548--23900616	14	4.7	14	75	15	59	73	8	1	15	1.14
23901640--23902022	40	9.6	40	73	9	218	43	16	11	28	1.83
23901707--23901987	81	3.5	79	83	6	332	41	17	12	28	1.86
23901708--23902012	160	1.9	160	81	2	369	42	17	11	28	1.84
23914043--23914081	20	2.0	20	84	0	51	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23914932--23914971	20	2.0	20	86	13	57	37	20	17	25	1.94
23916573--23916623	25	2.0	27	92	7	88	41	0	0	58	0.98
23917421--23917482	32	1.9	33	86	3	90	56	0	1	41	1.09
23919893--23919923	14	2.1	15	94	5	55	6	16	0	77	0.97
23929467--23929506	21	1.9	21	84	0	53	15	7	2	75	1.14
23945280--23945322	2	21.5	2	95	0	77	48	2	48	0	1.14
23946492--23946542	13	3.9	13	78	0	57	60	0	0	39	0.97
23946458--23946539	33	2.6	30	78	14	92	57	2	0	40	1.12
23947302--23947340	19	2.1	19	90	9	62	58	0	2	38	1.12
23956286--23956329	22	2.0	22	95	0	79	31	11	13	43	1.80
23962653--23962701	20	2.4	22	77	19	61	59	4	24	12	1.50
23968157--23968210	2	27.0	2	87	7	74	48	3	1	46	1.30
23986049--23986080	2	16.5	2	93	6	57	53	0	0	46	1.00
23987147--23987171	12	2.1	12	100	0	50	60	0	0	40	0.97
23987584--23987631	3	16.3	3	91	4	80	33	0	0	66	0.92
23992813--23992894	42	2.0	42	97	0	155	57	18	7	17	1.62
23996997--23997039	20	2.2	20	87	4	61	0	23	2	74	0.93
24000831--24000969	69	2.0	69	98	0	269	25	22	14	37	1.92
24005121--24005147	14	1.9	14	100	0	54	59	0	40	0	0.98
24032546--24032573	2	14.0	2	100	0	56	50	0	0	50	1.00
24039099--24039148	21	2.3	22	80	13	50	38	2	4	56	1.30
24058072--24058106	15	2.4	15	90	4	54	48	0	5	45	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24058078--24058117	21	1.9	21	89	0	62	50	0	5	45	1.23
24058617--24058641	7	3.6	7	100	0	50	88	0	0	12	0.53
24071491--24071539	24	2.0	24	100	0	98	34	12	12	40	1.80
24072272--24072303	1	32.0	1	93	0	55	3	0	0	96	0.20
24072272--24072306	11	3.2	11	95	0	61	5	0	0	94	0.32
24076563--24076596	18	1.9	18	88	5	52	26	20	5	47	1.73
24093268--24093540	142	1.9	139	83	2	348	25	22	17	34	1.96
24103608--24103658	2	25.5	2	100	0	102	50	0	49	0	1.00
24103972--24104006	2	17.5	2	87	0	52	45	0	0	54	0.99
24105141--24105172	2	16.0	2	93	0	55	46	0	0	53	1.00
24113343--24113384	11	3.8	11	87	0	66	50	0	0	50	1.00
24117052--24117082	2	15.5	2	100	0	62	48	0	0	51	1.00
24125355--24125440	27	3.2	27	86	0	109	38	37	4	19	1.73
24135284--24135323	2	20.0	2	100	0	80	50	0	0	50	1.00
24142731--24142773	14	3.1	14	77	9	52	60	0	0	39	0.97
24149208--24149236	14	2.0	15	93	6	51	20	6	10	62	1.50
24149656--24149706	26	1.9	26	88	4	75	9	5	0	84	0.78
24150622--24150659	19	2.0	19	89	0	58	39	7	5	47	1.55
24150953--24150991	9	4.4	9	90	9	55	84	0	0	15	0.62
24151148--24151791	48	13.1	49	77	6	511	40	18	10	30	1.84
24151242--24151668	147	2.9	145	78	5	369	39	18	11	29	1.86
24151158--24151776	195	3.2	190	78	8	539	40	17	10	30	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24151766--24151815	24	2.1	24	96	0	91	44	14	4	38	1.63
24151790--24152012	49	4.5	49	80	6	200	41	18	9	30	1.82
24151790--24152012	50	4.5	49	79	7	236	41	18	9	30	1.82
24151635--24152226	221	2.7	221	91	1	925	39	18	10	31	1.84
24151987--24152036	24	2.1	24	96	0	91	44	14	4	38	1.63
24151937--24152084	74	2.0	72	83	7	183	40	18	9	31	1.82
24151888--24152132	124	2.0	119	84	7	314	40	18	9	31	1.82
24152011--24152519	48	10.4	50	81	3	506	39	20	11	29	1.86
24162087--24162366	142	2.0	142	88	0	416	31	19	11	37	1.88
24164516--24164554	17	2.3	18	83	16	57	43	2	0	53	1.14
24167022--24167051	10	3.1	10	95	4	53	36	0	0	63	0.95
24169806--24169889	42	2.0	42	92	0	141	20	23	29	26	1.99
24175891--24175986	49	2.0	49	97	0	183	34	20	17	27	1.95
24178461--24178631	62	2.7	62	81	6	191	44	14	8	33	1.74
24178595--24178691	50	2.0	49	83	6	124	40	17	14	27	1.89
24178645--24179232	62	9.4	61	72	11	325	38	14	12	35	1.83
24178641--24179209	126	4.5	124	78	9	363	38	13	12	35	1.82
24178719--24179209	126	3.9	124	80	7	474	39	12	12	36	1.80
24180289--24180337	24	2.0	24	84	7	64	57	0	2	40	1.10
24182052--24182078	2	13.5	2	100	0	54	48	0	0	51	1.00
24185368--24185399	14	2.3	14	94	0	55	0	40	0	59	0.97
24197568--24197603	7	4.9	7	90	10	54	27	2	0	69	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24204578--24204636	27	2.1	28	81	3	66	35	6	6	50	1.55
24205266--24205306	21	1.9	22	85	5	57	70	0	2	26	0.99
24205813--24205838	2	13.0	2	100	0	52	50	0	0	50	1.00
24219187--24219238	22	2.4	21	81	12	61	17	3	3	75	1.11
24219184--24219238	23	2.5	22	79	5	58	18	3	3	74	1.11
24222776--24222812	18	2.1	18	89	0	56	43	0	0	56	0.99
24222786--24222831	18	2.8	17	84	15	53	52	0	0	47	1.00
24223014--24223052	14	2.6	15	84	12	53	56	7	7	28	1.55
24223683--24223711	14	2.0	15	93	6	51	41	6	0	51	1.28
24223876--24223900	13	1.9	13	100	0	50	48	4	8	40	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127