genome.fa.s656.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  102  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19081805--19081838	8	4.0	8	85	14	50	47	0	0	52	1.00
19081805--19081857	18	2.8	19	88	8	74	47	0	1	50	1.12
19081805--19081864	27	2.3	27	82	5	70	48	0	1	50	1.11
19088133--19088168	2	18.0	2	100	0	72	50	0	0	50	1.00
19092619--19092673	16	3.4	17	70	12	53	43	0	0	56	0.99
19094103--19094169	25	2.7	24	81	9	64	70	5	1	22	1.18
19095222--19095250	13	2.2	13	100	0	58	55	0	0	44	0.99
19095722--19095800	39	2.0	38	81	13	90	43	2	8	45	1.48
19096030--19096069	20	2.0	20	90	9	64	67	0	0	32	0.91
19105553--19105628	24	3.2	23	79	7	71	1	43	6	48	1.37
19107318--19107726	202	2.0	202	99	0	809	33	17	13	35	1.89
19110342--19110410	34	2.0	34	91	0	111	49	11	4	34	1.59
19113098--19113129	14	2.3	14	100	0	64	56	6	6	31	1.49
19113445--19113474	6	5.0	6	91	0	51	16	20	33	30	1.94
19114857--19114910	21	2.6	20	80	8	54	57	3	3	35	1.34
19116468--19116494	14	1.9	14	100	0	54	14	0	3	81	0.82
19116533--19116585	26	2.0	28	88	7	83	71	5	1	20	1.16
19116539--19116591	22	2.4	23	78	12	67	73	3	1	20	1.08
19116573--19116635	29	2.3	26	78	10	72	71	3	0	25	1.01
19116573--19116634	27	2.2	29	80	8	76	70	3	0	25	1.02
19116672--19116724	22	2.4	22	90	0	88	16	20	33	28	1.95
19117442--19117479	3	12.7	3	89	10	60	68	2	0	28	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19117738--19117892	63	2.5	63	95	2	276	47	9	18	24	1.79
19117887--19117948	31	2.0	31	83	0	79	45	17	19	17	1.86
19117955--19118168	55	3.9	55	84	0	257	42	17	21	18	1.89
19118096--19118249	82	1.9	82	83	0	200	40	14	22	21	1.90
19118194--19118374	55	3.3	55	75	3	177	44	13	19	22	1.85
19118190--19118391	110	1.8	110	86	4	291	43	14	19	22	1.87
19118190--19118432	110	2.2	109	80	4	272	43	13	19	23	1.87
19118237--19118429	55	3.5	54	72	8	147	45	15	18	21	1.86
19124063--19124108	19	2.5	19	89	6	69	73	2	0	23	0.94
19124079--19124120	19	2.2	19	86	0	57	73	2	7	16	1.15
19124390--19124415	13	2.0	13	100	0	52	61	7	0	30	1.24
19124899--19124945	3	15.7	3	95	0	85	68	2	0	29	1.02
19135219--19135262	16	2.7	16	89	3	61	34	0	0	65	0.93
19138005--19138038	5	7.0	5	90	6	52	79	0	2	17	0.86
19138005--19138032	14	2.0	14	100	0	56	78	0	0	21	0.75
19141239--19141275	14	2.6	15	79	12	51	24	0	2	72	0.97
19145204--19145295	46	2.0	45	85	6	123	65	1	3	30	1.16
19145168--19145280	18	6.3	18	71	19	69	66	0	3	29	1.14
19145220--19145359	62	2.2	63	79	13	155	64	2	2	30	1.22
19145353--19145394	20	2.2	19	86	4	57	61	2	2	33	1.21
19145608--19145645	17	2.3	17	86	4	51	23	0	2	73	0.95
19145632--19145684	20	2.7	20	81	0	61	41	0	7	50	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19145681--19145739	17	3.4	17	78	17	52	35	0	1	62	1.05
19145689--19145776	28	3.2	28	76	15	94	39	0	1	59	1.05
19145677--19145776	19	5.5	18	71	18	66	40	0	2	58	1.10
19145690--19145768	37	2.2	36	82	15	92	37	0	1	60	1.05
19148023--19148174	71	2.1	71	100	0	304	40	13	17	28	1.87
19154207--19154260	23	2.3	25	84	12	78	57	0	0	42	0.98
19158111--19158198	36	2.4	36	86	3	115	42	6	23	27	1.79
19160638--19160745	41	2.6	41	75	7	110	24	24	3	48	1.67
19161647--19161704	18	3.4	18	70	18	61	29	6	10	53	1.61
19161627--19161704	32	2.4	32	91	0	129	33	6	7	52	1.55
19162548--19162572	12	2.1	12	100	0	50	32	28	0	40	1.57
19163195--19163228	13	2.5	13	90	4	50	2	20	8	67	1.31
19172673--19172710	19	2.0	19	94	0	67	57	21	2	18	1.52
19174034--19174105	14	4.9	14	72	13	56	69	4	2	23	1.19
19174059--19174118	20	3.2	18	73	21	61	73	3	1	21	1.07
19174875--19175163	3	95.7	3	70	16	71	54	5	6	32	1.50
19174962--19175000	14	2.7	14	92	4	60	66	0	2	30	1.05
19175022--19175078	22	2.5	23	85	5	89	56	7	0	36	1.27
19175028--19175069	17	2.5	17	84	0	57	54	7	0	38	1.28
19175128--19175163	10	3.7	10	92	3	56	63	2	0	33	1.08
19175334--19175600	110	2.4	110	78	4	259	37	15	24	22	1.93
19175336--19175652	111	2.9	111	77	6	259	35	14	25	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19188744--19188780	11	3.5	11	79	20	51	45	2	0	51	1.15
19188743--19188798	21	2.7	21	91	2	87	48	3	0	48	1.19
19190170--19190251	32	2.5	33	88	2	112	31	9	7	51	1.62
19193573--19193616	22	2.0	21	82	4	52	59	2	11	27	1.44
19194844--19194887	23	1.9	22	82	17	54	34	0	20	45	1.51
19194866--19194907	21	2.1	21	86	8	61	42	0	19	38	1.51
19195426--19195456	2	15.5	2	93	0	53	54	0	45	0	0.99
19200076--19200110	16	2.2	16	90	5	54	17	17	14	51	1.77
19204483--19204535	22	2.4	22	84	12	65	43	5	1	49	1.37
19205586--19205635	21	2.4	21	80	3	66	14	26	20	40	1.90
19207413--19207461	21	2.3	20	83	10	71	75	4	18	2	1.06
19208205--19208259	24	2.3	24	80	0	74	18	0	12	69	1.19
19208211--19208250	12	3.3	12	80	13	55	25	0	5	70	1.08
19212346--19212401	21	2.7	22	76	17	57	28	0	0	71	0.86
19212427--19212643	116	1.8	118	86	8	318	47	4	14	34	1.65
19212411--19212657	59	4.2	59	80	10	281	49	5	12	32	1.63
19212642--19212685	16	2.8	16	86	6	63	54	6	0	38	1.27
19212604--19212746	73	1.9	75	84	5	193	51	4	8	34	1.53
19212687--19212895	59	3.6	57	80	11	205	46	7	11	34	1.68
19213582--19213929	172	2.0	172	99	0	687	27	17	20	33	1.96
19218184--19218227	23	2.0	22	95	4	79	25	4	20	50	1.67
19218188--19218235	23	2.3	21	82	13	55	27	6	18	47	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19218740--19218777	19	2.0	19	94	0	67	76	0	18	5	0.97
19218988--19219022	13	2.6	14	86	9	54	34	8	22	34	1.85
19219109--19219177	10	6.5	10	82	11	84	84	0	14	1	0.70
19219115--19219173	21	2.9	20	79	18	68	84	0	13	1	0.69
19220297--19220534	21	11.7	21	72	12	149	38	7	16	36	1.78
19220690--19220735	24	2.0	23	87	12	67	30	8	19	41	1.82
19220643--19220787	66	2.2	65	90	3	227	32	10	17	39	1.84
19220866--19220919	23	2.4	23	87	9	76	31	9	18	40	1.82
19221088--19221471	43	9.1	41	79	5	322	22	11	21	44	1.84
19221116--19221515	45	9.4	44	81	5	285	21	12	21	44	1.84
19221093--19221515	130	3.3	128	80	5	448	21	11	21	45	1.83
19222479--19222515	14	2.7	14	80	19	51	27	0	0	72	0.84
19222473--19222514	11	3.6	11	84	15	50	26	0	0	73	0.83
19222599--19222899	59	5.3	58	72	19	221	49	5	10	34	1.61
19222615--19222889	56	4.9	57	71	19	197	49	5	11	33	1.63
19222688--19222905	107	2.0	107	86	6	309	50	6	10	33	1.62
19222876--19222917	16	2.7	15	86	13	59	57	4	2	35	1.33
19222838--19222983	74	2.0	73	85	6	197	50	4	7	36	1.52
19225331--19225356	9	2.9	9	100	0	52	42	0	0	57	0.98
19226671--19226734	4	16.0	4	93	0	83	50	7	0	42	1.31
19227227--19227258	15	2.1	16	88	11	50	68	0	9	21	1.17
19229271--19229329	29	2.1	29	80	3	66	27	1	5	66	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19230175--19230219	2	22.5	2	100	0	90	51	0	0	48	1.00
19231230--19231259	8	3.8	8	95	0	51	0	43	6	50	1.28
19232860--19232896	2	18.5	2	100	0	74	51	0	48	0	1.00
19234566--19234818	121	2.1	121	84	0	326	25	15	22	36	1.93
19234777--19234838	19	3.3	19	79	0	70	19	14	27	38	1.90
19234755--19234807	28	1.9	27	88	3	79	24	7	33	33	1.84
19234672--19234957	140	2.0	140	81	2	333	24	15	23	36	1.93
19235047--19235094	19	2.6	19	83	9	55	18	18	20	41	1.90
19235541--19235708	85	2.0	85	84	0	219	23	10	23	42	1.85
19235372--19235694	170	1.9	169	79	5	357	23	13	21	40	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127