genome.fa.s656.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  95  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17856484--17856537	14	3.7	14	80	9	54	31	0	1	66	1.02
17856499--17856530	16	2.0	16	93	0	55	40	0	0	59	0.97
17858733--17858794	15	4.1	14	71	20	54	70	0	1	27	0.96
17858702--17858794	48	2.0	46	81	12	109	63	2	3	31	1.22
17860997--17861066	35	2.0	35	83	5	88	78	1	17	2	0.94
17860987--17861050	33	1.9	34	83	3	85	78	1	20	0	0.84
17861049--17861073	13	1.9	13	100	0	50	72	0	16	12	1.13
17861002--17861093	6	14.7	6	72	15	53	76	1	19	3	0.99
17867910--17867960	22	2.3	23	83	12	63	31	29	13	25	1.94
17868007--17868104	44	2.2	44	80	3	117	32	27	17	22	1.96
17868773--17868829	9	6.4	9	82	6	55	84	12	1	1	0.79
17868824--17868852	15	2.0	15	93	6	51	62	3	6	27	1.37
17871398--17871456	8	7.8	8	73	17	54	83	0	11	5	0.81
17871397--17871456	14	4.1	14	76	19	68	81	0	13	5	0.84
17871391--17871456	23	2.9	24	84	11	93	80	0	12	7	0.91
17871425--17871528	36	2.9	35	73	13	86	74	2	15	7	1.17
17871982--17872041	24	2.5	25	91	8	90	38	3	3	55	1.33
17884788--17884862	21	3.8	21	76	11	70	62	4	1	32	1.22
17884787--17884870	10	8.7	10	76	17	72	65	3	1	29	1.17
17884851--17884928	30	2.7	29	78	5	86	55	3	2	38	1.32
17884909--17884994	9	9.0	9	74	12	64	61	5	1	31	1.27
17884851--17884932	29	2.8	28	78	12	85	53	4	2	39	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17884943--17885008	29	2.3	29	76	5	71	63	12	0	24	1.28
17885055--17885092	19	2.0	20	84	5	51	63	5	0	31	1.17
17885131--17885218	29	3.1	29	81	9	94	56	1	4	37	1.27
17885136--17885217	28	2.9	28	80	5	85	54	1	4	39	1.29
17885568--17885615	20	2.3	21	75	13	55	31	2	4	62	1.26
17885624--17885676	20	2.6	21	79	11	56	28	0	5	66	1.15
17885706--17885756	25	2.0	27	88	7	79	21	1	9	66	1.31
17885708--17885763	25	2.1	27	80	6	62	23	1	10	64	1.35
17885704--17885774	27	2.6	27	78	10	74	28	2	8	60	1.40
17885769--17885830	30	2.1	30	84	6	81	33	1	11	53	1.46
17885853--17885927	21	3.7	21	73	10	66	32	2	8	57	1.42
17888292--17888569	138	2.0	139	90	0	432	28	16	14	41	1.87
17895672--17895736	31	2.1	30	86	8	87	43	1	12	43	1.51
17895724--17895765	17	2.5	17	92	0	66	40	0	0	59	0.97
17898490--17898514	5	5.0	5	100	0	50	80	0	0	20	0.72
17902239--17902616	197	1.9	198	81	7	457	45	6	11	35	1.67
17906758--17906841	4	21.5	4	77	16	70	79	0	17	2	0.83
17906755--17906831	15	5.4	15	80	14	76	80	0	18	1	0.78
17906767--17906838	10	6.6	11	75	10	60	81	0	16	1	0.75
17906756--17906825	17	4.4	16	82	13	83	81	0	17	1	0.77
17906764--17906841	15	5.7	13	77	20	79	80	0	17	1	0.77
17906752--17906870	47	2.7	44	72	16	111	75	0	20	4	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17913595--17913631	16	2.2	17	95	4	67	83	0	16	0	0.64
17920073--17920167	11	9.2	10	74	12	68	50	0	1	48	1.07
17920071--17920164	32	3.0	32	74	20	81	51	0	1	47	1.07
17920098--17920175	21	3.8	21	80	9	74	48	0	2	48	1.15
17920068--17920163	31	3.1	31	75	13	81	50	0	1	48	1.07
17926897--17926931	17	2.1	17	88	0	52	77	2	20	0	0.90
17934980--17935065	37	2.3	39	82	8	106	37	25	9	27	1.87
17936310--17937030	158	4.6	158	81	3	824	33	7	19	40	1.78
17936303--17937033	316	2.3	316	85	1	957	33	6	19	40	1.78
17948973--17949129	52	3.0	52	83	1	190	42	8	23	26	1.82
17949608--17949690	31	2.7	31	98	0	157	27	19	26	26	1.99
17949728--17949792	24	2.7	25	81	11	73	41	7	32	18	1.79
17949757--17949808	25	2.1	25	89	7	79	40	3	32	23	1.72
17949768--17949833	25	2.8	24	79	4	71	30	3	37	28	1.72
17950100--17950174	25	3.0	25	100	0	150	60	4	24	12	1.49
17950153--17950296	51	2.8	51	84	4	166	42	7	23	26	1.81
17950254--17950284	16	1.9	16	93	0	53	48	6	25	19	1.72
17954640--17954682	18	2.4	18	84	0	59	4	9	2	83	0.87
17954641--17954688	18	2.6	19	80	12	55	4	10	2	83	0.87
17955577--17955641	26	2.5	26	82	2	67	41	13	3	41	1.60
17955791--17955852	25	2.4	25	84	7	81	41	20	4	32	1.74
17956169--17956380	110	1.9	111	85	6	297	39	16	3	40	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17957528--17957554	2	13.5	2	100	0	54	51	0	0	48	1.00
17970450--17970493	22	2.0	22	87	12	65	65	2	2	29	1.16
17970904--17970938	15	2.3	15	85	0	52	48	0	0	51	1.00
17970906--17971006	38	2.7	37	78	3	103	37	0	2	58	1.20
17973734--17973872	71	2.0	70	95	1	251	45	12	19	23	1.84
17982410--17982468	5	11.4	5	76	16	50	77	1	1	18	0.93
17982410--17982469	13	5.1	12	77	15	63	78	1	1	18	0.92
17982413--17982463	24	2.1	25	85	10	70	78	1	1	17	0.94
17984640--17984664	12	2.1	12	100	0	50	76	0	0	24	0.80
17986835--17986898	17	3.6	17	81	6	74	39	17	10	32	1.84
17986738--17986902	18	9.6	18	72	9	103	36	12	11	39	1.79
17986831--17986911	36	2.3	35	85	4	110	37	13	13	35	1.84
17986974--17987003	15	1.9	16	93	6	53	26	13	23	36	1.92
17986993--17987030	18	2.2	17	86	9	51	36	15	15	31	1.90
17986980--17987038	16	3.6	17	80	10	61	35	15	18	30	1.92
17988328--17988401	9	8.7	9	79	8	59	12	16	1	70	1.24
17988335--17988417	33	2.5	31	78	17	89	13	16	1	68	1.27
17988335--17988417	17	5.1	16	76	15	73	13	16	1	68	1.27
17988338--17988417	7	10.0	7	75	22	61	12	16	1	70	1.24
17991711--17991753	22	2.0	22	86	9	61	44	4	11	39	1.62
17993821--17993845	12	2.1	12	100	0	50	76	0	0	24	0.80
17995009--17995240	123	1.9	125	92	3	398	42	23	2	31	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17995773--17995856	44	1.9	43	83	7	107	40	13	9	36	1.77
17995863--17996041	49	3.7	49	79	4	173	43	19	11	26	1.84
17996483--17996512	13	2.2	13	94	5	51	40	10	20	30	1.85
17997209--17997238	15	2.0	15	93	0	51	16	6	0	76	0.99
18006553--18006806	125	2.0	125	95	0	454	32	11	19	36	1.88
18007738--18007790	20	2.6	20	75	21	56	58	11	3	26	1.49
18007830--18007900	24	3.0	23	75	20	74	53	21	5	19	1.65
18007819--18007911	13	8.1	11	68	25	50	52	19	7	20	1.69
18008077--18008128	15	3.8	13	76	16	52	76	3	3	15	1.07
18008074--18008111	18	2.1	18	90	0	58	78	0	5	15	0.91
18009220--18009323	51	2.0	51	92	0	172	36	14	12	36	1.84
18010196--18010283	5	18.2	5	73	11	58	71	4	2	21	1.15
18010196--18010235	19	2.1	19	86	9	55	77	0	5	17	0.94
18019367--18019410	17	2.7	16	83	13	54	29	6	0	63	1.20
18025789--18026600	41	20.0	40	89	4	1030	21	17	21	38	1.93
18025789--18026600	124	6.7	122	89	4	1103	21	17	21	38	1.93
18026817--18026857	9	5.1	8	83	16	50	26	0	2	70	0.99
18026825--18026969	16	8.8	16	71	22	72	31	1	3	64	1.19
18026826--18026971	12	11.9	12	67	19	54	30	1	3	64	1.18
18026819--18026968	8	21.6	7	69	22	52	31	1	3	64	1.18
18026819--18026968	56	2.6	58	72	19	136	31	1	3	64	1.18
18027363--18027416	25	2.2	25	86	6	74	38	3	18	38	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18027960--18028021	11	5.9	11	83	9	60	14	4	1	79	0.98
18027959--18028037	6	12.7	6	71	20	56	15	5	1	78	0.99
18027967--18028037	14	5.6	13	77	12	53	15	4	1	78	0.97
18028047--18028350	59	5.0	59	79	14	330	47	7	11	33	1.68
18028115--18028244	68	1.9	70	90	3	210	50	6	9	33	1.61
18028033--18028350	127	2.6	124	83	10	377	46	8	10	34	1.68
18032932--18033036	30	3.5	30	79	5	122	39	12	3	44	1.60
18040268--18040293	11	2.4	11	100	0	52	76	7	0	15	0.99
18043317--18043351	18	2.0	18	88	5	54	28	5	0	65	1.15
18044402--18044560	2	79.5	2	76	7	144	47	0	8	43	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127