genome.fa.s656.2.7.7.80.10.50.1000.78.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  78  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14951198--14951506	168	1.8	167	82	6	401	37	10	9	42	1.71
14951408--14951660	138	1.8	136	85	3	330	37	8	7	45	1.64
14952409--14952726	168	1.9	163	83	6	408	40	6	10	42	1.65
14953018--14953057	19	2.0	21	85	9	57	45	7	5	42	1.54
14955807--14957349	180	8.6	182	73	10	416	42	8	8	40	1.65
14956276--14958855	180	14.4	179	75	8	1358	42	8	7	41	1.64
14956298--14958855	536	4.8	529	76	8	1498	42	8	7	41	1.64
14959380--14959429	22	2.4	20	80	9	55	12	26	8	54	1.64
14963625--14963679	23	2.4	23	90	0	83	18	29	9	43	1.80
14976041--14976493	125	3.6	125	77	10	413	36	10	13	38	1.80
14976212--14976383	61	2.7	65	70	16	162	37	10	13	38	1.80
14976198--14976405	64	3.3	63	69	11	165	37	10	14	37	1.80
14976454--14976912	124	3.6	125	75	9	344	36	15	11	36	1.84
14980577--14980638	32	1.9	32	86	0	88	33	14	24	27	1.94
14980582--14981514	323	2.9	318	79	4	899	32	16	22	28	1.95
14987197--14987229	18	1.9	17	88	11	50	48	9	6	36	1.60
14987822--14988233	181	2.3	182	81	0	484	40	7	7	44	1.62
14988606--14991989	181	18.8	181	74	8	1916	42	9	7	41	1.65
14989233--14989273	18	2.3	19	79	8	50	43	4	4	46	1.46
14990693--14990726	18	2.0	17	88	11	52	38	5	8	47	1.59
14988985--14991992	538	5.6	532	76	9	1646	42	9	7	41	1.65
14998675--14998874	64	3.2	63	67	16	153	39	13	9	38	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15006446--15006479	17	1.9	18	88	5	52	38	0	0	61	0.96
15006398--15006947	276	2.0	276	95	0	983	36	8	6	48	1.58
15007979--15008008	10	3.1	10	95	4	53	63	0	0	36	0.95
15008220--15008262	14	3.1	14	100	0	86	51	0	6	41	1.29
15016560--15016603	10	4.4	10	80	11	54	2	15	2	79	0.93
15023023--15023065	20	2.1	21	91	4	70	60	0	2	37	1.10
15023253--15023315	29	2.2	28	86	5	83	50	0	3	46	1.17
15023335--15023388	11	4.6	11	75	20	56	33	0	1	64	1.04
15023335--15023388	22	2.3	25	84	15	71	33	0	1	64	1.04
15023335--15023408	12	6.2	12	77	14	57	32	1	1	64	1.10
15026865--15026937	22	3.1	23	78	18	80	34	2	0	63	1.09
15031037--15031338	153	2.0	153	84	2	401	24	20	12	42	1.86
15035559--15035844	154	1.9	151	87	2	419	51	10	20	17	1.74
15036712--15036759	23	2.1	23	88	7	71	45	2	0	52	1.12
15036723--15036793	29	2.4	29	79	9	74	43	4	1	50	1.30
15036781--15036825	16	2.6	17	79	10	56	53	0	0	46	1.00
15036801--15036839	20	2.0	20	89	0	60	61	0	0	38	0.96
15043457--15043554	49	2.0	49	91	0	160	38	6	11	43	1.65
15045477--15045588	55	2.1	53	81	6	127	34	5	3	56	1.39
15052845--15052898	22	2.4	23	90	6	83	51	7	16	24	1.69
15053389--15053421	12	2.8	12	100	0	66	15	15	18	51	1.77
15054590--15054635	22	2.1	22	100	0	92	43	17	17	21	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15059235--15059278	21	2.1	21	87	8	63	18	18	0	63	1.31
15064132--15065607	499	2.9	498	80	7	1268	32	9	16	40	1.81
15065199--15066878	422	4.0	423	86	2	2221	32	10	18	39	1.84
15066468--15071593	536	9.8	520	84	5	5730	31	11	17	39	1.86
15066468--15071593	516	9.9	519	84	5	5882	31	11	17	39	1.86
15066468--15071593	518	9.9	517	85	4	5954	31	11	17	39	1.86
15071370--15072257	222	4.0	222	87	1	1190	35	13	15	35	1.87
15072041--15074369	534	4.4	532	82	6	2501	31	11	18	38	1.87
15074745--15075012	130	2.1	130	87	1	385	24	10	24	41	1.85
15074906--15075867	515	1.9	515	86	3	1375	30	12	18	38	1.87
15075799--15076122	163	2.0	163	90	1	506	38	15	15	31	1.88
15076038--15078284	517	4.5	487	82	7	2567	30	13	17	37	1.89
15078052--15078702	223	2.9	221	84	6	820	35	14	15	33	1.88
15079013--15079891	222	4.0	219	85	5	1103	36	13	15	33	1.88
15081123--15081490	195	1.9	195	84	3	499	35	12	16	35	1.86
15081286--15081758	222	2.1	221	86	2	680	37	13	15	34	1.86
15083662--15084641	491	2.0	490	85	4	1339	30	13	17	38	1.88
15087407--15087459	26	2.0	27	81	7	63	24	7	32	35	1.84
15087927--15087979	26	2.0	27	81	7	63	24	7	32	35	1.84
15088165--15088811	222	2.9	221	86	3	881	36	15	14	32	1.88
15089631--15090633	222	4.5	222	85	2	1309	36	14	16	32	1.89
15091656--15091919	132	2.0	132	92	0	438	34	14	17	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15092231--15092896	221	3.0	221	89	2	978	36	14	16	33	1.89
15093120--15094319	509	2.3	512	86	4	1682	30	14	17	37	1.90
15094837--15096696	514	3.6	511	82	4	2228	30	13	17	38	1.88
15096477--15097140	223	3.0	222	85	2	940	36	14	15	33	1.88
15098018--15098573	222	2.5	220	87	2	785	36	13	16	32	1.88
15098623--15100141	511	2.9	513	83	3	1865	30	12	17	38	1.87
15101503--15101841	166	2.0	166	85	6	459	34	14	17	33	1.91
15101016--15102324	681	1.9	678	83	4	1713	30	14	18	36	1.91
15102745--15103849	521	2.1	519	86	4	1503	30	15	17	37	1.91
15103943--15105678	521	3.3	516	86	4	2249	28	14	19	37	1.91
15105725--15108003	520	4.4	516	85	5	2887	30	15	17	35	1.91
15107828--15108174	171	2.0	171	89	1	534	35	15	18	30	1.92
15108589--15117581	523	17.3	517	84	4	10026	31	13	16	38	1.88
15117895--15117931	14	2.5	15	91	8	58	32	0	5	62	1.18
15123010--15123087	35	2.3	35	84	6	97	8	17	3	69	1.30
15128887--15128913	13	2.1	13	100	0	54	62	0	14	22	1.31
15129099--15129139	22	1.9	22	85	5	57	39	0	0	60	0.96
15130757--15130836	18	4.6	18	68	14	69	36	31	5	27	1.78
15130757--15130836	33	2.3	35	77	14	85	36	31	5	27	1.78
15134977--15135007	2	15.5	2	100	0	62	51	0	0	48	1.00
15138327--15138372	20	2.3	20	88	3	67	52	2	2	43	1.25
15138409--15138471	29	2.2	29	76	18	69	53	0	3	42	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15138407--15138483	27	2.9	27	76	16	72	58	0	2	38	1.12
15138615--15138718	9	11.4	9	67	15	54	56	2	1	38	1.25
15138602--15138698	27	3.6	27	78	10	83	52	2	3	42	1.28
15138615--15138662	19	2.7	18	81	12	55	62	0	2	35	1.07
15138935--15138985	17	2.8	18	73	8	50	29	1	5	62	1.29
15138933--15139003	36	1.9	37	85	2	99	30	1	7	60	1.32
15142292--15142326	2	17.5	2	100	0	70	51	0	0	48	1.00
15145008--15145043	12	3.0	12	87	0	54	33	0	16	50	1.46
15149469--15149976	253	2.0	253	94	0	899	32	20	16	29	1.95
15152289--15152367	32	2.4	32	79	12	81	49	3	1	45	1.28
15153340--15153385	15	3.1	15	84	9	58	30	10	2	56	1.46
15153558--15153609	23	2.2	25	83	13	65	61	0	1	36	1.07
15155044--15155085	22	2.0	22	90	4	68	45	2	7	45	1.44
15155204--15155261	25	2.3	23	73	21	55	50	1	0	48	1.11
15155275--15155381	12	10.0	11	71	17	57	51	1	0	45	1.18
15156952--15156993	21	2.0	21	85	0	57	40	4	7	47	1.52
15161784--15161848	30	2.2	30	82	0	76	56	1	0	41	1.08
15161828--15161867	19	2.0	21	85	9	57	65	0	0	35	0.93
15162224--15162267	22	2.0	22	100	0	88	36	9	9	45	1.68
15166141--15166184	22	2.0	22	95	0	79	31	11	13	43	1.80
15171959--15171983	7	3.6	7	100	0	50	88	0	0	12	0.53
15172937--15172996	3	20.7	3	89	6	88	65	0	0	35	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15173375--15173459	22	3.7	21	73	16	71	34	44	7	14	1.72
15173392--15173472	24	3.5	24	75	11	78	29	45	6	18	1.73
15173393--15173486	46	2.0	46	83	4	118	34	43	6	15	1.73
15173386--15173462	22	3.4	22	74	10	75	31	46	6	15	1.71
15196004--15196049	2	23.0	2	90	0	65	45	2	4	47	1.34
15197272--15197338	26	2.6	25	82	13	100	49	0	2	47	1.16
15197322--15197395	18	4.1	19	78	13	59	51	0	1	47	1.09
15197433--15197546	15	7.3	15	69	19	81	40	0	1	57	1.15
15197742--15197775	14	2.4	14	90	5	50	41	5	8	44	1.60
15198270--15198390	61	2.0	61	88	0	179	29	19	8	42	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127