genome.fa.s656.2.7.7.80.10.50.1000.83.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  83  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15851574--15851608	18	1.9	18	88	11	54	85	0	5	8	0.73
15859362--15859388	13	2.1	13	100	0	54	55	14	7	22	1.64
15868447--15868498	12	4.3	12	82	0	59	40	32	7	19	1.80
15869111--15869855	185	4.0	186	85	4	892	39	12	14	33	1.84
15872619--15872650	12	2.8	12	95	4	57	56	0	25	18	1.42
15877790--15877894	42	2.5	41	78	6	111	30	18	11	40	1.86
15877805--15877993	42	4.6	42	74	7	120	30	18	10	40	1.84
15878046--15878385	85	4.0	85	81	1	369	25	19	16	37	1.93
15878058--15878390	170	2.0	170	83	1	418	25	19	17	37	1.93
15882826--15882859	15	2.3	15	89	0	50	67	5	20	5	1.33
15888157--15888182	10	2.6	10	100	0	52	23	26	0	50	1.50
15890960--15891120	35	4.6	35	74	1	126	19	22	10	46	1.81
15890930--15891154	105	2.1	105	80	4	240	20	20	8	49	1.76
15890956--15891156	105	1.9	104	82	5	253	20	22	9	47	1.78
15890959--15891181	105	2.1	105	79	6	247	21	21	8	48	1.76
15891100--15891186	35	2.5	35	86	0	120	21	19	4	54	1.62
15890959--15891227	105	2.6	105	77	7	233	20	20	10	49	1.76
15894022--15894051	15	1.9	15	93	6	51	60	0	10	30	1.30
15895691--15895822	71	1.9	71	87	3	194	46	5	12	35	1.65
15897229--15897270	18	2.3	18	91	0	75	30	4	16	47	1.67
15898434--15898522	44	2.0	44	93	0	151	37	7	11	43	1.70
15903529--15903575	19	2.5	20	80	16	55	42	2	0	55	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15903787--15903835	3	16.3	3	100	0	98	32	0	0	67	0.91
15909199--15909241	20	2.3	18	81	14	52	51	2	0	46	1.13
15910899--15910930	1	32.0	1	100	0	64	0	0	0	100	0.00
15912556--15912588	15	2.2	15	94	0	57	48	6	24	21	1.72
15920337--15920366	2	15.0	2	92	0	51	53	0	0	46	1.00
15920562--15920598	15	2.5	15	86	0	56	16	0	0	83	0.64
15926237--15926513	144	1.9	144	79	4	308	33	12	11	41	1.80
15931996--15932430	118	3.7	117	82	6	474	32	11	18	37	1.86
15931984--15932421	230	1.9	233	84	3	587	31	11	19	37	1.87
15932577--15932619	22	2.0	22	90	0	68	16	20	32	30	1.95
15934102--15934144	22	1.9	23	86	13	63	16	18	6	58	1.60
15934438--15934517	18	4.3	18	75	17	67	0	15	2	82	0.77
15934423--15934517	33	3.0	33	80	9	108	1	16	2	80	0.88
15937199--15937429	123	1.9	123	80	5	270	34	11	12	41	1.79
15943427--15943461	16	2.2	16	89	0	52	28	14	14	42	1.84
15951787--15951825	21	2.0	18	85	14	51	53	7	0	38	1.30
15953746--15953804	27	2.4	24	76	17	59	3	0	20	76	0.93
15961279--15961321	18	2.4	18	96	0	77	53	23	2	20	1.57
15989052--15989082	13	2.4	13	100	0	62	29	0	16	54	1.42
15991923--15991991	9	7.8	9	76	9	61	68	15	5	10	1.37
15991929--15991991	17	3.6	18	83	10	76	66	15	6	11	1.42
15991922--15991991	27	2.7	26	93	4	122	67	15	5	11	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15994628--15994700	34	2.2	34	82	7	87	56	6	16	20	1.63
16012823--16012873	21	2.4	21	77	6	59	43	23	17	15	1.88
16019244--16021886	161	16.6	159	74	8	1520	42	14	9	33	1.79
16019260--16021915	322	8.3	320	77	7	1988	42	14	10	33	1.79
16020238--16020496	142	1.8	142	88	0	392	40	15	10	33	1.81
16022020--16022069	16	3.0	17	94	5	93	54	0	6	40	1.25
16023052--16023619	188	3.0	188	98	0	1082	33	19	12	33	1.89
16024062--16024094	13	2.5	13	90	0	57	57	9	6	27	1.53
16030597--16030637	21	2.0	21	85	9	57	53	19	7	19	1.68
16031361--16031398	14	2.5	15	83	12	51	65	10	2	21	1.35
16031892--16031936	5	8.8	5	87	7	56	82	2	0	15	0.77
16032254--16032285	6	5.3	6	100	0	64	84	0	15	0	0.63
16034023--16034054	2	16.0	2	100	0	64	50	0	0	50	1.00
16034698--16034870	22	7.9	22	77	7	147	39	4	5	50	1.45
16034684--16034917	66	3.6	65	81	6	222	38	7	5	48	1.53
16034854--16034908	22	2.5	22	82	2	76	38	12	3	45	1.60
16034884--16034949	30	2.2	30	84	7	82	40	9	3	46	1.51
16034913--16034989	22	3.5	22	75	8	75	37	9	2	50	1.48
16035091--16035317	44	5.2	44	71	14	157	37	8	5	48	1.57
16035091--16035313	65	3.4	64	74	11	184	37	8	5	48	1.57
16035035--16035323	22	13.2	22	68	11	110	38	9	5	47	1.59
16035676--16035859	22	8.4	22	74	8	133	37	5	7	49	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16035676--16035859	44	4.2	43	78	6	181	37	5	7	49	1.55
16035699--16035837	11	12.6	11	68	8	86	37	5	5	51	1.48
16035676--16035847	66	2.6	65	80	9	197	37	5	6	50	1.54
16035645--16035848	88	2.3	88	80	6	225	36	6	7	49	1.56
16035823--16035884	30	2.1	29	85	8	81	40	4	4	50	1.45
16035860--16036206	22	16.2	22	66	12	80	36	9	5	49	1.58
16035858--16035971	44	2.7	43	76	4	115	37	7	7	47	1.60
16036141--16036196	21	2.6	22	80	2	69	39	16	1	42	1.58
16036246--16036549	22	13.9	22	67	10	95	36	8	4	49	1.56
16036413--16036578	44	3.8	44	76	10	155	37	8	5	48	1.57
16036493--16036558	22	3.0	21	76	8	60	39	4	6	50	1.48
16037499--16037566	34	2.0	35	85	2	93	69	8	1	20	1.24
16037518--16037589	34	2.1	34	82	5	83	72	9	2	15	1.22
16038644--16038692	22	2.1	24	85	7	66	38	2	8	51	1.43
16040089--16040137	24	2.0	22	81	14	53	63	2	4	30	1.24
16040372--16040457	30	2.9	30	70	3	84	44	2	16	37	1.60
16041226--16041296	26	2.8	25	81	8	90	47	0	2	49	1.16
16041260--16041332	16	4.6	16	72	16	62	49	0	2	47	1.15
16041260--16041299	15	2.6	15	84	4	53	50	0	2	47	1.14
16041226--16041334	26	4.4	26	69	17	63	49	0	2	47	1.15
16041381--16041597	18	10.9	22	69	21	108	41	1	1	55	1.17
16041403--16041582	54	3.2	53	69	17	130	42	1	1	55	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16041503--16041610	38	2.8	38	77	8	112	41	2	0	54	1.21
16046902--16047257	176	2.0	176	94	1	624	40	14	19	26	1.89
16049048--16049195	74	2.0	74	80	3	165	35	17	21	25	1.95
16049064--16049228	74	2.3	74	83	2	208	35	18	20	26	1.95
16051751--16051802	20	2.6	20	100	0	104	26	26	23	23	2.00
16055956--16055990	14	2.5	14	90	0	61	68	0	0	31	0.90
16056303--16056351	15	3.2	15	85	5	62	55	0	4	40	1.19
16056676--16056700	2	12.5	2	100	0	50	52	0	0	48	1.00
16057204--16057245	12	3.2	13	83	10	50	83	2	14	0	0.75
16057205--16057241	19	2.0	18	89	5	56	83	2	13	0	0.74
16057393--16057417	1	25.0	1	100	0	50	0	0	0	100	0.00
16060744--16060796	27	1.9	28	84	3	72	37	3	11	47	1.58
16060825--16060859	19	1.9	17	88	11	52	65	0	5	28	1.15
16063439--16063480	19	2.2	19	91	0	66	42	4	7	45	1.52
16066612--16066657	18	2.6	17	86	13	58	80	0	19	0	0.71
16067023--16067262	51	4.8	49	78	11	193	45	17	5	31	1.71
16067066--16067300	51	4.6	51	78	11	180	46	17	5	29	1.71
16070394--16070451	29	2.0	29	93	0	98	32	15	22	29	1.95
16083560--16083594	17	2.0	18	94	5	63	77	0	5	17	0.96
16088369--16088397	12	2.4	12	100	0	58	10	13	20	55	1.68
16088405--16088483	39	2.0	39	87	0	113	22	17	6	53	1.67
16089786--16089829	20	2.3	18	85	11	61	29	9	9	52	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16089835--16089973	47	2.9	47	79	13	142	29	2	12	55	1.51
16089854--16089996	24	6.1	24	78	11	118	30	2	11	55	1.49
16089954--16090269	55	5.8	55	81	0	375	29	5	11	54	1.58
16089959--16090262	110	2.8	110	93	1	504	28	5	11	54	1.59
16090337--16090375	19	2.1	19	90	0	60	28	5	12	53	1.60
16090344--16090401	24	2.4	24	88	5	82	32	3	12	51	1.56
16090568--16090636	18	3.8	18	77	14	70	37	4	8	49	1.54
16092475--16092571	21	4.6	21	80	11	110	22	21	24	30	1.99
16100352--16100377	13	2.0	13	100	0	52	30	23	7	38	1.83
16100550--16101114	43	13.1	43	79	8	558	28	14	19	38	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127