genome.fa.s656.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  43  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8550512--8550555	22	2.0	22	90	0	70	61	13	0	25	1.32
8550532--8550604	29	2.5	30	82	4	96	63	12	0	24	1.29
8553299--8553475	44	4.1	43	76	11	157	44	13	9	32	1.76
8553345--8553475	43	3.0	43	81	8	160	43	12	9	33	1.76
8553508--8553581	13	5.8	13	78	13	82	27	29	1	41	1.64
8553502--8553580	26	3.1	25	81	5	95	26	27	1	44	1.62
8554841--8554879	19	2.0	20	90	5	62	28	7	0	64	1.21
8559074--8559123	5	8.8	6	86	8	54	34	2	0	64	1.05
8559097--8559143	16	2.9	16	81	12	51	27	4	0	68	1.08
8559121--8559266	3	47.3	3	71	16	70	27	3	2	66	1.21
8559151--8559264	24	4.6	24	78	12	115	28	3	1	66	1.18
8559200--8559259	31	1.9	32	86	10	88	30	1	1	66	1.11
8559521--8559546	12	2.2	12	100	0	52	23	0	7	69	1.14
8559992--8560064	12	6.3	11	79	14	67	24	4	0	71	1.04
8560035--8560064	5	5.8	5	92	7	51	20	0	0	80	0.72
8560081--8560220	73	1.9	73	82	8	178	51	5	7	35	1.55
8560169--8560342	61	2.9	59	80	9	183	51	5	10	32	1.59
8560169--8560393	120	1.9	119	82	9	287	49	5	11	33	1.61
8560149--8560387	60	4.1	57	75	13	200	50	5	10	33	1.59
8563505--8563537	15	2.3	15	89	5	50	39	12	9	39	1.74
8571598--8571637	21	2.0	20	85	5	53	30	15	17	37	1.90
8571888--8571969	43	1.9	42	85	7	112	25	12	13	48	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8571961--8572088	42	3.0	42	77	12	143	25	14	19	40	1.90
8572289--8572322	5	6.6	5	89	3	50	35	2	0	61	1.11
8572329--8572465	3	43.3	3	73	16	75	27	3	2	67	1.19
8572353--8572463	48	2.3	49	87	6	165	27	3	1	67	1.17
8573254--8573286	5	6.8	5	93	6	59	18	0	0	81	0.68
8573242--8573287	15	2.9	15	81	18	58	19	2	0	78	0.86
8573303--8573517	70	3.0	71	80	7	245	49	6	8	35	1.58
8573303--8573515	73	3.0	73	80	7	238	50	5	8	35	1.56
8573462--8573635	59	2.9	59	83	7	217	50	4	10	35	1.55
8581539--8581712	61	2.9	60	78	4	172	50	3	2	44	1.31
8581578--8581712	60	2.3	59	81	1	162	48	2	2	45	1.29
8584536--8584612	22	3.4	22	70	16	66	36	6	7	49	1.58
8594641--8594693	24	2.3	24	83	6	65	45	0	13	41	1.43
8595704--8595749	3	15.3	3	100	0	92	67	0	0	32	0.91
8606062--8606124	28	2.4	25	81	7	72	38	3	0	58	1.14
8612790--8612831	3	14.0	3	100	0	84	66	0	0	33	0.92
8619526--8619881	188	1.9	181	83	6	455	27	13	15	43	1.84
8624616--8624644	12	2.4	12	100	0	58	55	20	6	17	1.65
8628580--8628618	19	2.1	19	85	0	51	51	5	5	38	1.46
8635258--8635289	16	2.0	16	100	0	64	43	6	12	37	1.68
8639350--8639408	30	1.9	30	82	6	73	59	1	1	37	1.18
8640675--8640714	22	1.9	21	85	10	55	17	0	30	52	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8640728--8640950	14	14.7	15	70	13	91	21	0	32	45	1.58
8640744--8640951	30	6.9	29	80	8	170	20	0	32	46	1.58
8640682--8640900	14	14.8	14	70	13	111	21	0	29	47	1.57
8640760--8640900	58	2.4	58	81	10	146	19	0	30	48	1.54
8640809--8640925	21	4.9	24	72	22	95	19	0	31	48	1.49
8640880--8640925	24	2.0	23	91	4	74	19	0	30	50	1.48
8640882--8640933	23	2.3	23	83	6	61	17	0	34	48	1.48
8640895--8640956	32	1.9	32	86	0	88	16	1	37	45	1.57
8640728--8640956	7	30.4	7	65	14	73	20	0	32	46	1.57
8641340--8641409	3	23.3	3	91	0	77	28	5	4	61	1.38
8642141--8642195	24	2.4	22	84	9	74	10	7	41	40	1.68
8642503--8642537	3	11.3	3	87	6	52	31	2	0	65	1.07
8646808--8646854	18	2.5	19	82	6	60	61	0	0	38	0.96
8647421--8647453	2	16.5	2	100	0	66	48	0	0	51	1.00
8650847--8650881	6	5.7	6	90	6	52	11	0	2	85	0.69
8650853--8650881	13	2.2	13	100	0	58	13	0	0	86	0.58
8664050--8664085	2	18.0	2	100	0	72	50	0	0	50	1.00
8664170--8664214	2	22.5	2	86	0	54	51	6	0	42	1.28
8664173--8664214	18	2.3	18	91	0	66	52	7	0	40	1.29
8664170--8664213	16	2.8	16	89	0	70	52	6	0	40	1.28
8664722--8664749	2	14.0	2	100	0	56	50	0	0	50	1.00
8666505--8666536	3	10.7	3	100	0	64	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8676326--8676702	185	2.0	187	81	7	446	34	13	14	36	1.86
8676523--8677254	294	2.5	294	92	0	1180	36	14	13	35	1.86
8684693--8684721	14	2.1	14	93	6	51	37	3	0	58	1.15
8687409--8687451	22	2.0	22	86	4	61	34	2	2	60	1.22
8688656--8688706	22	2.5	20	76	14	59	58	0	0	41	0.98
8690148--8690229	42	2.0	41	92	2	137	41	9	3	45	1.55
8692507--8692553	23	2.1	22	88	11	69	25	2	8	63	1.34
8692518--8692568	22	2.3	23	83	10	61	31	1	9	56	1.43
8700580--8700619	20	2.0	20	100	0	80	30	15	25	30	1.95
8710592--8710626	2	17.5	2	100	0	70	51	0	0	48	1.00
8711501--8711537	18	2.1	18	100	0	74	48	10	16	24	1.77
8711530--8711982	232	2.0	228	88	4	669	43	3	9	43	1.56
8712053--8712086	13	2.7	12	86	13	50	44	0	0	55	0.99
8712039--8712101	34	1.9	33	84	9	85	47	0	0	52	1.00
8725748--8725773	2	13.0	2	100	0	52	50	0	0	50	1.00
8725811--8725936	34	3.8	34	78	4	141	38	3	6	52	1.43
8726470--8726516	15	3.3	15	73	11	53	53	2	17	27	1.55
8732626--8732729	35	2.9	36	81	2	122	42	4	14	38	1.67
8734284--8734319	18	2.1	17	89	5	54	38	8	0	52	1.32
8748284--8748315	16	2.0	16	93	0	55	37	15	6	40	1.73
8748938--8749014	38	2.0	38	90	5	120	28	9	29	32	1.88
8753115--8753175	29	2.1	29	93	0	104	31	9	3	55	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8753073--8753180	29	3.8	28	74	16	98	32	7	4	55	1.48
8753227--8753300	30	2.5	30	82	4	87	45	2	9	41	1.50
8753757--8753799	19	2.3	19	88	8	61	41	0	0	58	0.98
8759916--8759961	21	2.3	20	85	7	58	56	13	17	13	1.67
8766382--8766897	258	2.0	258	97	0	978	41	11	12	35	1.78
8775053--8775083	13	2.5	13	94	5	55	22	0	3	74	0.96
8775776--8775813	16	2.3	17	86	4	51	47	2	2	47	1.30
8777359--8777393	2	18.0	2	94	5	63	48	0	0	51	1.00
8778211--8778259	24	2.0	24	96	0	89	38	34	0	26	1.57
8779049--8779109	29	2.0	29	87	6	86	49	1	6	42	1.38
8779104--8779212	31	3.5	31	82	3	130	42	2	2	52	1.30
8780631--8780677	22	2.2	22	96	3	87	51	0	0	48	1.00
8782911--8782975	33	2.0	33	81	0	76	21	10	21	46	1.82
8783038--8783068	2	15.5	2	100	0	62	51	0	0	48	1.00
8785284--8785370	45	1.9	45	95	0	156	37	5	19	36	1.76
8789302--8789345	22	2.0	22	95	0	79	31	11	13	43	1.80
8793222--8793265	22	2.0	22	95	0	79	31	11	13	43	1.80
8795503--8795527	3	8.3	3	100	0	50	68	0	32	0	0.90
8796423--8796490	31	2.2	31	78	5	75	51	1	0	47	1.09
8796928--8796969	11	3.7	12	78	9	52	54	0	0	45	0.99
8797429--8797459	13	2.4	13	94	0	53	48	0	0	51	1.00
8797429--8797465	14	2.6	15	87	8	51	45	0	0	54	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8797542--8797586	22	2.0	23	87	12	67	31	4	2	62	1.27
8798701--8798745	16	2.9	16	78	15	51	66	0	0	33	0.92
8802342--8802380	2	19.5	2	100	0	78	48	0	0	51	1.00
8803387--8803433	24	2.0	24	91	0	76	21	17	8	53	1.70
8809575--8809951	187	2.0	188	90	0	594	27	16	15	40	1.89
8811470--8811521	22	2.4	21	75	12	52	46	19	3	30	1.68
8813636--8813697	30	2.1	30	84	0	79	43	3	19	33	1.67
8816460--8816535	21	3.5	21	74	13	82	31	21	0	47	1.51
8818123--8818149	11	2.5	11	100	0	54	92	0	7	0	0.38
8819034--8819072	20	1.9	21	89	5	62	58	2	0	38	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127