genome.fa.s656.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  61  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11909607--11910017	144	2.8	143	81	2	475	43	13	10	32	1.79
11909663--11910101	144	3.0	146	79	2	382	43	14	10	31	1.80
11911568--11911637	29	2.4	29	81	11	81	47	0	0	52	1.00
11913745--11913780	2	18.0	2	100	0	72	50	0	0	50	1.00
11914712--11914763	25	2.1	25	96	0	95	48	17	15	19	1.82
11914949--11915014	22	3.0	21	84	6	87	53	1	0	45	1.09
11915841--11915917	38	2.0	38	100	0	154	49	10	20	19	1.77
11916143--11916173	2	15.5	2	93	0	53	48	0	0	51	1.00
11919344--11919404	29	2.0	30	84	12	81	49	0	0	50	1.00
11920716--11920771	3	18.7	3	100	0	112	33	0	0	66	0.92
11922890--11923010	50	2.4	50	86	2	163	42	20	4	31	1.73
11923003--11923245	120	2.0	120	84	3	319	48	11	7	31	1.68
11929414--11929481	3	22.7	3	86	11	95	69	1	1	27	1.06
11929608--11929691	23	3.6	23	72	13	73	48	32	1	17	1.55
11929766--11929833	3	22.7	3	86	11	95	69	0	2	27	1.03
11929356--11930065	352	2.0	352	96	0	1321	51	12	5	30	1.62
11930077--11930206	24	5.5	22	73	14	82	49	28	0	21	1.55
11930093--11930182	40	2.3	40	81	9	105	50	27	0	22	1.50
11930178--11930305	30	4.2	29	75	11	80	52	27	0	20	1.47
11930252--11930303	15	3.5	15	77	17	54	53	30	0	15	1.42
11935335--11935361	14	1.9	14	100	0	54	22	7	25	44	1.79
11937839--11937998	82	1.9	82	87	8	236	60	11	16	12	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11938621--11938651	15	2.1	15	100	0	62	45	22	6	25	1.76
11939334--11939383	17	2.9	17	84	3	55	40	16	10	34	1.81
11939788--11940712	356	2.6	356	79	4	961	21	22	13	42	1.88
11939812--11940770	238	4.0	238	77	3	750	21	22	13	42	1.88
11939812--11940851	119	8.7	121	75	7	556	21	22	13	42	1.88
11940179--11940851	239	2.8	239	77	6	535	22	23	12	41	1.88
11942105--11942145	18	2.2	19	86	4	57	19	4	0	75	0.98
11942119--11942176	30	1.9	31	85	3	82	24	1	3	70	1.12
11942149--11942194	11	4.3	11	81	13	51	21	2	2	73	1.04
11942303--11942354	21	2.4	21	84	12	70	57	9	1	30	1.42
11942307--11942354	23	2.1	22	84	3	60	56	10	2	31	1.45
11947447--11947512	32	2.1	32	100	0	132	48	15	9	27	1.74
11947447--11947530	32	2.6	32	88	7	100	50	14	9	26	1.73
11954745--11954785	1	41.0	1	100	0	82	100	0	0	0	0.00
11956525--11956552	3	9.3	3	100	0	56	0	67	0	32	0.91
11958779--11958813	2	18.0	2	94	5	63	48	0	0	51	1.00
11958770--11958814	21	2.1	21	92	8	74	46	0	2	51	1.13
11968051--11968078	2	14.0	2	100	0	56	50	0	0	50	1.00
11969734--11969773	16	2.6	15	84	7	53	57	2	5	35	1.34
11972080--11972270	94	2.0	94	85	2	258	51	10	9	27	1.69
11974384--11974428	19	2.4	19	84	0	54	68	0	4	26	1.08
11974604--11974656	25	2.0	26	85	10	72	41	3	1	52	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11974611--11974662	25	2.0	26	85	7	70	44	3	1	50	1.31
11976717--11976780	29	2.2	31	81	16	91	25	6	0	68	1.12
11978189--11978219	12	2.6	12	94	0	53	9	0	9	80	0.90
11979199--11979270	31	2.3	31	80	0	81	48	11	15	25	1.77
11979344--11979419	22	3.5	22	92	0	125	31	26	14	27	1.95
11979530--11979662	32	4.1	31	76	9	115	30	16	19	33	1.94
11979593--11979662	33	2.2	33	82	10	83	32	15	20	31	1.94
11979971--11980068	22	4.5	22	77	2	90	26	14	22	36	1.92
11980131--11980201	29	2.4	29	80	0	88	42	14	12	30	1.82
11981155--11981248	23	4.3	21	74	16	77	4	20	0	75	0.97
11981163--11981219	27	2.2	26	84	9	71	3	19	0	77	0.92
11981162--11981247	20	3.9	22	77	21	83	4	20	0	74	1.00
11982478--11982510	10	3.7	9	92	8	50	0	18	0	81	0.68
11983246--11983333	3	29.7	3	86	2	61	65	10	3	20	1.37
11983248--11983327	9	8.9	9	90	0	70	67	11	3	17	1.36
11983548--11983603	3	18.7	3	84	0	67	7	0	23	69	1.12
11983560--11983606	9	5.2	9	89	0	76	10	0	21	68	1.20
11983602--11983628	3	9.0	3	100	0	54	33	0	0	66	0.92
11984844--11984995	60	2.5	61	79	8	168	38	15	5	41	1.69
11985321--11985352	3	10.7	3	100	0	64	68	0	0	31	0.90
11986862--11987057	85	2.3	85	89	0	284	46	16	13	23	1.83
11986913--11987249	85	4.0	85	77	6	290	44	15	16	23	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11988072--11988363	96	3.1	95	86	3	390	20	16	12	50	1.78
11988045--11988363	47	6.7	47	84	2	359	20	18	12	48	1.80
11995347--11995561	59	3.6	58	75	7	146	38	14	6	40	1.73
11995464--11995792	59	5.6	57	72	15	199	35	10	6	48	1.63
11995954--11995989	3	11.7	3	88	5	54	66	2	0	30	1.06
11996822--11996853	9	3.6	9	95	0	55	21	3	0	75	0.95
11999315--11999351	13	3.0	13	84	7	51	29	5	0	64	1.15
11999530--11999567	16	2.4	16	90	0	58	57	2	7	31	1.41
12000870--12000915	23	2.1	21	88	8	65	15	15	2	67	1.33
12000870--12000927	23	2.5	21	79	17	62	13	15	1	68	1.28
12001128--12001158	15	2.1	15	93	0	53	0	0	22	77	0.77
12001457--12001495	19	2.1	19	85	0	51	66	7	2	23	1.30
12001566--12001600	16	2.2	16	89	0	52	54	0	2	42	1.15
12004812--12004840	14	2.1	14	100	0	58	51	13	0	34	1.42
12008115--12008145	12	2.6	12	100	0	62	16	16	22	45	1.85
12008868--12008895	14	2.0	14	100	0	56	57	0	0	42	0.99
12008860--12008947	34	2.6	32	82	10	104	47	3	4	44	1.40
12008902--12008987	34	2.5	35	83	5	104	40	10	3	45	1.55
12010896--12010951	18	3.1	18	84	5	67	58	5	0	35	1.21
12011400--12011472	32	2.2	32	83	7	85	58	0	1	39	1.06
12011431--12011481	24	2.2	23	83	13	61	58	1	1	37	1.20
12011461--12011511	16	3.2	16	77	2	59	54	5	1	37	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12013815--12013859	24	1.9	23	86	4	63	80	4	2	13	0.97
12014025--12014065	17	2.3	18	87	4	57	85	4	7	2	0.81
12014094--12014131	20	2.0	20	84	5	51	68	0	0	31	0.90
12020822--12020862	19	2.2	19	91	4	66	48	0	0	51	1.00
12020994--12021036	19	2.3	19	80	8	52	81	2	0	16	0.79
12021341--12021392	24	2.2	24	86	6	72	50	0	3	46	1.20
12021340--12021392	21	2.4	23	81	9	67	50	0	3	45	1.19
12021672--12021733	21	3.0	21	85	2	90	40	1	0	58	1.08
12022830--12022869	21	2.0	20	85	5	53	22	5	0	72	1.04
12044935--12044960	1	26.0	1	100	0	52	0	0	0	100	0.00
12051373--12051402	15	1.9	15	93	6	51	3	10	0	86	0.67
12051560--12051598	14	2.6	14	84	8	51	82	0	2	15	0.79
12051560--12051612	25	2.2	24	90	6	81	79	0	5	15	0.91
12051565--12051612	19	2.5	20	83	9	57	79	0	6	14	0.92
12051976--12052011	10	3.6	10	88	0	54	75	16	0	8	1.04
12052408--12052498	12	8.2	10	81	13	67	74	2	1	21	0.99
12052402--12052443	20	2.1	20	86	8	59	80	0	4	14	0.86
12052407--12052471	17	3.8	16	82	11	58	78	3	1	16	0.96
12052429--12052513	3	28.7	3	86	2	118	69	2	0	28	1.01
12052419--12052514	12	8.2	12	88	2	108	71	2	0	26	0.96
12053078--12053295	117	1.9	115	81	3	267	39	12	22	25	1.89
12057234--12057271	18	2.2	18	90	4	60	34	18	0	47	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12057509--12057550	22	2.0	22	86	13	61	35	0	4	59	1.19
12058635--12058726	46	2.0	46	84	0	121	40	19	9	30	1.84
12072779--12072815	19	1.9	19	88	0	56	51	2	0	45	1.15
12073392--12073433	7	6.1	7	86	5	50	40	4	0	54	1.21
12073392--12073431	13	3.0	13	82	7	53	40	5	0	55	1.22
12073881--12073940	20	3.0	20	76	13	61	75	3	0	21	0.95
12074078--12074137	25	2.4	25	81	8	70	23	5	1	70	1.16
12074314--12074351	17	2.2	18	86	13	53	18	2	0	78	0.86
12074314--12074354	18	2.2	18	86	4	55	19	2	0	78	0.87
12074411--12074452	20	2.2	20	86	4	59	11	2	7	78	1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127