genome.fa.s656.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  50  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9963250--9963301	15	3.5	15	86	5	79	75	7	0	17	1.03
9963252--9963321	29	2.5	27	86	9	88	78	5	0	15	0.93
9963229--9963316	7	12.1	7	75	17	65	76	4	1	18	1.02
9963250--9963321	15	4.8	14	77	14	63	77	5	0	16	0.94
9963289--9963321	17	1.9	17	100	0	66	84	0	0	15	0.61
9969551--9969612	25	2.6	25	87	5	83	24	17	12	45	1.84
9975744--9975770	2	13.5	2	100	0	54	0	51	0	48	1.00
9977881--9977926	22	2.1	22	91	0	74	21	0	30	47	1.51
9983911--9983966	28	2.0	28	89	0	85	64	12	5	17	1.45
9985838--9985871	15	2.2	16	89	5	52	38	0	0	61	0.96
9987948--9988012	26	2.6	25	85	7	89	58	9	1	30	1.39
9987948--9988003	14	4.1	13	75	13	51	57	8	1	32	1.40
9988031--9988069	20	2.0	20	89	0	60	58	15	7	17	1.59
9994375--9994454	42	1.9	42	100	0	160	28	7	8	55	1.58
9999546--9999585	21	1.9	21	89	0	62	60	0	0	40	0.97
9999533--9999575	14	3.0	14	80	12	52	60	0	0	39	0.97
10000035--10000085	17	2.9	17	85	8	59	35	0	0	64	0.94
10000035--10000092	17	3.4	17	79	13	57	34	1	0	63	1.04
10001548--10001588	18	2.3	18	100	0	82	63	0	4	31	1.15
10002496--10002538	20	2.2	20	83	8	52	62	0	4	32	1.15
10005281--10005305	12	2.1	12	100	0	50	28	0	0	72	0.86
10006954--10007032	37	2.1	37	90	0	122	22	7	15	54	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10008091--10008123	10	3.3	10	100	0	66	51	9	39	0	1.34
10010810--10010843	17	2.0	17	88	0	50	23	0	44	32	1.54
10010929--10011130	100	2.0	99	93	2	343	36	12	8	42	1.75
10018471--10018526	25	2.3	24	82	11	62	69	3	3	23	1.20
10019206--10019241	13	2.7	13	91	4	54	77	16	0	5	0.94
10019191--10019242	12	4.4	12	74	13	54	80	15	0	3	0.85
10020101--10020224	18	6.9	18	71	17	71	44	9	9	36	1.70
10020287--10020354	35	1.9	35	84	0	91	36	14	14	33	1.87
10020714--10020775	24	2.7	22	81	13	72	45	14	1	38	1.55
10026089--10026215	3	42.3	3	90	0	200	65	3	1	29	1.17
10026911--10026958	25	1.9	25	83	8	62	66	10	2	20	1.32
10032055--10032081	2	13.5	2	100	0	54	48	0	0	51	1.00
10032132--10032171	17	2.4	18	80	16	50	15	5	17	62	1.49
10032335--10032368	3	11.3	3	100	0	68	32	0	0	67	0.91
10033533--10033582	5	10.2	5	82	10	50	16	4	4	76	1.10
10034514--10034545	2	16.5	2	93	6	57	50	0	0	50	1.00
10034517--10034542	13	2.0	13	100	0	52	46	0	0	53	1.00
10034515--10034544	15	2.0	15	100	0	60	46	0	0	53	1.00
10034543--10034598	23	2.4	23	87	0	76	50	5	12	32	1.63
10043043--10043118	31	2.5	31	84	0	98	31	13	23	31	1.93
10044395--10044427	15	2.2	15	94	0	57	48	0	21	30	1.50
10045884--10045946	32	1.9	33	83	3	83	33	3	7	55	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10045922--10046259	20	16.6	20	75	13	130	30	6	11	51	1.63
10046032--10046342	41	7.6	41	85	5	405	30	7	12	49	1.67
10045998--10046341	164	2.1	165	85	3	460	30	6	11	50	1.65
10051679--10051711	14	2.4	14	94	0	57	54	12	12	21	1.69
10052951--10052979	14	2.1	14	100	0	58	58	13	6	20	1.58
10054360--10054660	42	7.1	41	80	5	291	29	15	19	35	1.92
10054360--10054660	85	3.6	83	80	6	329	29	15	19	35	1.92
10054930--10054964	12	2.8	13	91	8	63	22	0	5	71	1.07
10055625--10055691	20	3.5	18	77	16	57	31	5	11	50	1.63
10055635--10055691	20	2.8	21	86	7	73	33	5	10	50	1.59
10055663--10055707	20	2.2	20	88	0	63	31	8	6	53	1.58
10055717--10055970	20	12.4	20	72	12	203	31	6	10	51	1.62
10055721--10055970	61	4.1	62	76	11	160	31	6	10	51	1.62
10055717--10055970	41	6.2	41	79	7	191	31	6	10	51	1.62
10057963--10057996	1	34.0	1	87	0	50	0	0	5	94	0.32
10057963--10057997	9	3.9	9	92	0	61	0	0	8	91	0.42
10057963--10057994	16	1.9	17	93	6	57	0	0	6	93	0.34
10058654--10058708	27	2.0	28	86	6	78	58	5	7	29	1.48
10060616--10060708	48	2.0	48	91	2	152	38	7	9	44	1.66
10065005--10065056	21	2.4	22	80	6	61	38	0	1	59	1.08
10065017--10065064	25	1.9	26	91	8	82	41	0	0	58	0.98
10066228--10066257	12	2.6	12	94	5	53	36	13	0	50	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10066939--10067010	32	2.2	33	90	7	112	26	8	13	51	1.70
10072085--10072155	22	3.2	22	78	7	72	38	9	9	42	1.71
10074617--10074655	15	2.7	15	88	11	55	30	0	0	69	0.89
10074973--10075013	12	3.6	12	81	18	52	24	0	0	75	0.80
10074984--10075013	12	2.4	13	94	5	53	26	0	0	73	0.84
10075293--10075332	3	13.0	3	94	5	71	35	0	0	65	0.93
10075296--10075332	19	1.9	19	100	0	74	35	0	0	64	0.94
10077994--10078058	28	2.3	29	81	7	71	6	1	12	80	0.97
10077975--10078065	34	2.8	30	78	18	85	5	2	10	81	0.94
10078329--10078424	46	2.2	43	86	5	129	43	14	9	32	1.77
10079492--10079528	11	3.1	12	88	11	58	0	13	2	83	0.74
10079863--10079990	52	2.4	53	81	2	150	38	10	18	32	1.85
10086759--10086816	16	3.5	16	84	15	66	27	0	0	72	0.85
10086769--10086824	15	3.6	15	82	17	62	26	0	0	73	0.84
10087106--10087159	3	18.0	3	100	0	108	33	0	0	66	0.92
10087192--10087225	16	2.1	16	100	0	68	44	17	11	26	1.83
10088563--10088587	13	1.9	13	100	0	50	80	16	4	0	0.87
10089887--10089935	19	2.5	20	78	18	59	22	0	8	69	1.14
10090705--10090734	14	2.1	14	100	0	60	40	10	6	43	1.64
10091575--10091603	11	2.7	11	94	5	51	44	6	0	48	1.29
10092192--10092547	42	8.6	41	84	3	399	44	19	10	24	1.82
10092198--10092548	125	2.8	124	87	4	492	45	19	10	24	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10092775--10092842	33	2.1	33	83	5	84	35	17	14	32	1.91
10093550--10093599	9	4.9	10	77	20	50	8	14	0	78	0.97
10093551--10093599	21	2.4	21	93	3	82	8	14	0	77	0.98
10093556--10093597	12	3.9	11	82	17	61	9	16	0	73	1.08
10099916--10099963	16	2.9	16	78	3	51	27	4	0	68	1.07
10100188--10100228	21	2.0	21	85	0	55	2	39	0	58	1.11
10101848--10101877	4	7.2	4	92	7	51	26	0	0	73	0.84
10101848--10101886	13	3.1	13	85	14	55	28	0	0	71	0.86
10101846--10101886	17	2.4	17	84	8	57	29	0	0	70	0.87
10107624--10107673	24	2.0	25	84	3	66	22	4	0	74	0.99
10111592--10111639	18	2.5	19	77	16	55	75	0	10	14	1.06
10113157--10113219	17	3.7	17	79	8	58	38	11	14	36	1.81
10113363--10113412	18	2.8	18	84	6	57	40	14	10	36	1.79
10113387--10113479	17	5.4	17	71	15	66	38	19	11	30	1.87
10115069--10115148	7	11.9	7	76	5	58	8	3	7	80	1.02
10115118--10115146	12	2.3	13	94	5	51	13	3	6	75	1.13
10115069--10115148	33	2.4	35	81	8	94	8	3	7	80	1.02
10115161--10115198	3	12.7	3	88	0	58	26	0	5	68	1.11
10115161--10115195	15	2.3	15	100	0	70	25	0	5	68	1.11
10116861--10116960	46	2.2	46	83	1	128	20	16	28	36	1.93
10119877--10119901	13	1.9	13	100	0	50	72	4	0	24	1.02
10137213--10137285	3	23.7	3	88	5	101	68	2	1	27	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10137517--10137602	16	5.6	16	75	10	72	47	23	4	24	1.70
10137509--10137602	30	3.1	30	78	6	118	48	22	4	24	1.68
10137576--10137847	23	11.5	24	64	15	70	47	27	2	22	1.64
10137613--10137659	16	3.0	15	81	9	58	48	36	0	14	1.44
10137639--10137736	16	6.2	15	73	13	72	48	26	3	21	1.64
10137540--10137668	55	2.4	55	80	6	140	48	25	2	23	1.62
10137727--10137768	15	2.7	16	88	3	59	50	21	2	26	1.61
10147173--10147214	6	6.8	6	79	15	50	83	4	11	0	0.79
10148274--10148439	35	4.6	35	70	7	118	19	18	10	51	1.74
10148410--10148574	35	4.7	35	71	10	97	20	20	12	47	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127