genome.fa.s656.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  17  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3949310--3949398	30	3.0	29	83	6	81	65	2	2	30	1.17
3950149--3950245	38	2.5	39	85	8	126	34	23	24	17	1.96
3950184--3950241	20	2.8	21	78	5	73	34	24	22	18	1.96
3951272--3951296	9	2.8	9	100	0	50	32	12	12	44	1.78
3952080--3952126	17	2.5	19	76	16	53	34	2	0	63	1.06
3952093--3952125	12	2.8	12	90	4	50	33	3	0	63	1.10
3954261--3954325	28	2.4	26	80	10	69	52	0	1	46	1.10
3954325--3954361	13	2.8	13	95	0	65	81	0	0	18	0.70
3954325--3954356	7	4.9	7	88	11	50	84	0	0	15	0.63
3962196--3962234	12	3.2	12	85	3	51	38	0	0	61	0.96
3962750--3962807	24	2.3	26	82	14	68	58	0	1	39	1.08
3969376--3969407	3	10.7	3	100	0	64	34	0	0	65	0.93
3970179--3970207	13	2.3	13	94	5	51	75	0	0	24	0.80
3980382--3980415	2	17.0	2	100	0	68	50	0	0	50	1.00
3980415--3980440	2	13.0	2	100	0	52	0	0	50	50	1.00
3996194--3996248	26	2.0	27	89	6	85	43	21	9	25	1.82
4001350--4001417	22	2.9	24	78	8	77	52	1	0	45	1.09
4001454--4001512	16	3.7	15	76	13	55	55	1	1	40	1.20
4007237--4007298	26	2.4	25	84	7	79	4	3	67	24	1.25
4007538--4007596	29	2.1	28	81	9	66	32	0	5	62	1.17
4010433--4010485	26	2.0	26	96	0	97	16	15	37	30	1.90
4011873--4012193	22	14.4	22	69	17	80	53	2	1	42	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4011965--4012002	10	3.5	11	86	13	53	44	5	0	50	1.24
4011893--4012061	22	8.0	22	72	15	101	52	2	1	43	1.27
4011965--4012007	10	4.0	10	82	14	50	46	6	0	46	1.30
4011893--4012162	18	14.6	18	69	21	127	52	2	1	43	1.22
4012064--4012125	21	2.8	22	83	9	74	54	0	0	45	0.99
4012051--4012182	49	2.8	47	71	20	114	53	1	0	45	1.09
4012092--4012193	41	2.4	43	82	8	120	55	1	0	42	1.11
4012208--4012260	18	3.1	17	78	10	54	35	3	0	60	1.15
4012216--4012295	19	4.2	20	66	19	55	43	2	1	52	1.22
4012293--4012349	26	2.2	26	93	3	98	49	0	0	50	1.00
4013105--4013150	20	2.3	20	85	3	67	47	0	0	52	1.00
4013449--4013477	12	2.3	13	94	5	51	55	0	44	0	0.99
4013614--4013638	6	4.2	6	100	0	50	0	16	0	84	0.63
4015377--4015507	69	1.9	69	95	0	235	40	5	0	53	1.29
4018105--4018203	49	2.0	49	94	0	171	33	17	20	29	1.95
4019508--4019532	13	1.9	13	100	0	50	32	0	16	52	1.44
4021469--4021504	18	2.0	18	88	0	54	77	8	8	5	1.11
4021930--4021988	26	2.3	26	88	2	84	5	3	67	23	1.26
4022228--4022286	29	2.1	28	81	9	66	32	0	5	62	1.17
4025120--4025172	26	2.0	26	96	0	97	16	15	37	30	1.90
4026559--4026879	22	14.4	22	69	17	80	53	2	1	42	1.22
4026651--4026688	10	3.5	11	86	13	53	44	5	0	50	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4026579--4026747	22	8.0	22	72	15	101	52	2	1	43	1.27
4026651--4026693	10	4.0	10	82	14	50	46	6	0	46	1.30
4026579--4026848	18	14.6	18	69	21	127	52	2	1	43	1.22
4026750--4026811	21	2.8	22	83	9	74	54	0	0	45	0.99
4026737--4026868	49	2.8	47	71	20	114	53	1	0	45	1.09
4026778--4026879	41	2.4	43	82	8	120	55	1	0	42	1.11
4026894--4026946	18	3.1	17	78	10	54	35	3	0	60	1.15
4026902--4026981	19	4.2	20	66	19	55	43	2	1	52	1.22
4026966--4027034	25	2.8	25	89	6	97	52	0	0	47	1.00
4026964--4027020	15	4.2	15	70	22	54	52	0	0	47	1.00
4027788--4027833	20	2.3	20	85	3	67	47	0	0	52	1.00
4028132--4028160	12	2.3	13	94	5	51	55	0	44	0	0.99
4030042--4030180	68	2.0	69	93	2	237	38	5	2	53	1.38
4030068--4030173	31	3.3	29	67	22	86	39	3	1	54	1.29
4030064--4030184	34	3.5	33	69	14	102	38	4	1	56	1.29
4032790--4032888	49	2.0	49	94	0	171	32	15	20	32	1.93
4034189--4034213	13	1.9	13	100	0	50	32	0	16	52	1.44
4036000--4036136	48	2.7	47	80	13	123	30	12	6	50	1.65
4036035--4036136	48	2.1	49	85	8	138	26	11	5	55	1.58
4037362--4037428	33	2.0	33	97	0	125	32	17	16	32	1.93
4041428--4041475	21	2.3	21	85	0	60	37	4	6	52	1.46
4041738--4041780	22	2.0	22	95	0	77	44	4	13	37	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4043474--4043540	20	3.4	20	80	19	95	22	1	8	67	1.27
4043453--4043540	39	2.2	40	93	2	151	20	3	7	68	1.30
4043474--4043548	20	3.8	20	71	18	66	22	2	8	66	1.31
4045318--4045344	12	2.2	12	100	0	54	33	0	0	66	0.92
4048596--4048639	16	2.7	16	78	3	52	63	6	0	29	1.20
4052332--4052374	22	2.0	22	82	8	54	37	4	16	41	1.69
4052407--4052467	15	4.0	15	75	14	54	42	0	1	55	1.09
4052490--4052603	56	2.0	57	96	1	212	44	15	13	26	1.83
4053965--4053998	17	2.0	17	88	0	50	23	2	0	73	0.97
4058763--4058816	27	2.0	27	92	0	90	35	5	7	51	1.53
4058797--4058905	21	5.3	21	69	8	71	33	8	10	47	1.67
4058796--4058903	41	2.6	41	73	5	110	35	8	10	46	1.68
4059151--4059193	22	2.0	22	95	0	77	44	4	13	37	1.65
4060885--4060950	19	3.4	19	78	17	82	22	1	9	66	1.28
4060864--4060950	38	2.2	40	91	4	142	20	3	8	67	1.31
4067803--4068070	134	2.0	134	94	0	464	42	13	7	37	1.71
4068061--4068089	14	2.0	15	93	6	51	48	10	0	41	1.37
4069422--4069446	7	3.6	7	100	0	50	76	0	0	24	0.80
4069918--4069944	14	1.9	14	100	0	54	44	0	0	55	0.99
4070886--4070947	23	2.8	21	76	13	61	37	3	0	59	1.13
4070897--4070942	24	2.0	23	86	4	65	34	0	0	65	0.93
4071523--4071554	14	2.3	14	94	0	55	37	3	3	56	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4084193--4084579	48	8.0	48	81	2	416	31	12	21	35	1.90
4084193--4084550	97	3.7	97	82	1	432	32	11	21	34	1.89
4084193--4084550	145	2.5	145	83	3	425	32	11	21	34	1.89
4084798--4084837	19	2.2	18	90	4	62	2	17	0	80	0.83
4085765--4085810	21	2.1	22	84	4	58	26	4	2	67	1.21
4085953--4085996	10	4.3	10	80	13	54	68	2	2	27	1.14
4092148--4092191	18	2.4	18	100	0	88	25	43	11	20	1.85
4095966--4096012	2	24.5	2	85	8	62	51	2	0	46	1.13
4096054--4096107	25	2.2	25	93	0	90	51	0	1	46	1.11
4096084--4096126	19	2.2	20	80	12	54	41	0	0	58	0.98
4098628--4098678	20	2.5	20	100	0	102	25	23	19	31	1.98
4098830--4098882	23	2.2	24	75	18	58	60	0	1	37	1.08
4098868--4099108	120	2.0	120	90	0	374	45	9	16	29	1.77
4099154--4099212	2	31.0	2	85	10	79	54	0	0	45	0.99
4099154--4099225	16	4.6	16	83	15	80	52	2	0	44	1.15
4099253--4099298	17	2.5	18	82	13	58	32	0	0	67	0.91
4100252--4100276	13	1.9	13	100	0	50	0	8	4	88	0.64
4100296--4100352	24	2.3	26	85	8	75	28	7	0	64	1.19
4100892--4100917	12	2.2	12	100	0	52	42	7	15	34	1.75
4101459--4101490	14	2.3	14	94	0	55	37	3	3	56	1.31
4110988--4111026	4	9.8	4	94	0	69	51	25	0	23	1.49
4117764--4117802	20	2.0	20	84	0	51	74	5	10	10	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4117800--4117848	25	2.0	25	95	0	89	71	0	18	10	1.13
4119296--4119354	29	2.0	30	86	3	84	40	5	3	50	1.41
4160287--4160349	33	1.9	33	96	0	117	57	1	12	28	1.45
4160768--4160806	2	20.5	2	84	10	55	46	0	0	53	1.00
4161096--4161128	16	2.0	17	88	5	50	3	3	9	84	0.82
4161352--4161419	25	2.7	25	88	0	100	38	14	29	17	1.90
4165050--4165092	3	14.7	3	85	4	52	32	0	4	62	1.15
4165043--4165092	26	2.0	24	92	4	73	30	0	6	64	1.18
4187894--4188004	37	2.8	39	80	10	129	37	10	5	45	1.62
4188228--4188275	25	1.9	25	91	0	78	45	10	2	41	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127