genome.fa.s656.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  19  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4460191--4460221	2	15.5	2	100	0	62	48	0	0	51	1.00
4461380--4461410	15	2.1	15	100	0	62	35	0	19	45	1.51
4463343--4463379	19	2.0	19	85	15	51	54	0	0	45	1.00
4463567--4463631	25	2.5	26	72	25	66	30	0	1	67	1.00
4463579--4463623	15	2.9	15	83	6	54	28	0	2	68	1.01
4466388--4466435	17	3.2	17	67	32	54	20	14	0	64	1.28
4469998--4470030	10	3.3	10	95	0	57	24	9	3	63	1.38
4470068--4470104	6	6.2	6	93	0	65	18	0	13	67	1.23
4470790--4471592	416	1.9	414	93	1	1394	36	12	20	30	1.89
4475628--4475660	10	3.3	10	95	0	57	24	9	3	63	1.38
4475698--4475734	6	6.2	6	90	0	56	18	0	10	70	1.16
4483755--4483811	13	4.1	14	75	20	50	42	1	0	56	1.10
4483778--4483827	16	3.1	17	88	5	68	46	2	0	52	1.12
4483905--4483933	13	2.2	13	100	0	58	72	6	0	20	1.07
4483905--4483949	14	3.3	14	84	3	56	75	4	0	20	0.97
4484722--4484767	23	2.0	23	82	4	56	47	2	0	50	1.13
4489839--4489933	36	2.8	33	75	16	95	53	3	0	43	1.16
4489829--4489957	18	8.1	15	73	22	72	51	3	0	44	1.16
4489871--4489993	55	2.2	56	81	9	162	53	3	1	41	1.27
4489954--4490004	23	2.3	23	82	3	59	58	0	3	37	1.16
4489892--4490000	29	4.2	25	71	16	78	55	1	1	40	1.21
4490016--4490153	15	8.5	17	72	14	89	47	0	0	52	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4490013--4490138	32	3.9	31	71	23	82	46	0	0	53	1.06
4490019--4490131	34	3.4	31	79	17	95	47	0	0	51	1.06
4490128--4490160	15	2.1	16	88	5	50	51	3	0	45	1.16
4494674--4494704	13	2.3	14	94	5	55	87	0	12	0	0.55
4495952--4496000	13	3.9	12	81	7	62	40	0	0	59	0.98
4495952--4496010	31	1.9	31	83	13	77	40	0	3	55	1.16
4496022--4496071	11	4.5	11	78	9	57	42	0	0	58	0.98
4496008--4496071	33	2.0	32	84	9	85	48	0	0	51	1.00
4496605--4496653	19	2.7	18	81	9	55	46	2	0	51	1.12
4498748--4498786	9	4.3	9	90	0	60	12	23	12	51	1.74
4504983--4505034	13	4.2	12	76	11	52	44	3	1	50	1.31
4505796--4505838	21	2.0	21	81	0	50	11	9	11	67	1.42
4507074--4507253	90	2.0	90	86	4	256	30	13	18	37	1.89
4510353--4510396	21	2.2	20	83	4	52	34	4	6	54	1.47
4510356--4510407	14	3.6	14	75	14	52	28	3	7	59	1.43
4524412--4524474	32	1.9	34	84	12	87	55	1	1	41	1.19
4525359--4525400	14	3.2	14	77	16	54	57	0	0	42	0.99
4525358--4525427	29	2.5	29	84	11	85	57	0	2	40	1.14
4525495--4525523	12	2.3	13	94	5	51	62	3	0	34	1.12
4535790--4535872	40	2.1	40	93	0	139	43	20	8	27	1.81
4541118--4541147	2	15.5	2	93	6	53	50	0	0	50	1.00
4545754--4545831	28	2.7	29	80	11	97	52	0	2	44	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4545883--4545978	27	3.4	29	79	16	96	46	1	0	52	1.07
4546911--4546956	24	2.0	23	82	4	56	45	0	0	54	0.99
4547764--4547796	17	1.9	17	88	11	50	33	3	3	60	1.27
4551027--4551118	42	2.2	43	84	5	116	46	8	4	40	1.54
4551121--4551325	22	9.5	22	68	12	86	54	5	5	34	1.47
4551259--4551308	11	4.5	11	84	0	64	56	6	4	34	1.43
4551380--4551421	11	3.8	11	78	12	50	50	0	2	47	1.14
4551383--4551426	15	3.0	15	86	3	63	47	0	2	50	1.13
4551427--4551522	22	4.4	22	77	3	70	47	8	9	34	1.66
4552046--4552223	22	8.0	22	69	9	103	47	2	11	38	1.54
4552045--4552153	44	2.5	44	79	7	114	46	1	11	40	1.50
4552227--4552296	22	3.2	22	76	11	72	48	4	7	40	1.50
4552234--4552484	22	11.6	20	69	13	65	48	5	8	37	1.59
4552382--4552434	22	2.5	21	82	14	72	52	9	9	28	1.64
4552382--4552463	22	3.8	22	81	10	71	50	6	9	34	1.60
4552428--4552520	22	4.2	21	78	6	87	45	6	7	40	1.58
4552526--4552594	22	3.1	22	77	4	77	49	10	4	36	1.57
4552634--4552794	22	7.3	22	76	5	103	47	6	8	38	1.58
4552649--4552750	11	9.3	11	68	8	64	47	2	8	41	1.50
4552644--4552804	44	3.7	43	72	12	139	47	5	7	39	1.55
4552937--4552988	19	2.6	19	77	17	52	55	1	0	42	1.10
4556001--4556038	7	5.4	7	93	0	58	7	39	5	47	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4563584--4563635	22	2.5	21	87	9	72	51	0	0	48	1.00
4563579--4563639	22	2.9	21	83	11	65	47	0	0	52	1.00
4563636--4563681	23	2.0	24	87	8	69	52	0	2	45	1.13
4564591--4564645	23	2.3	23	81	9	58	56	1	3	38	1.28
4566348--4566390	14	3.2	14	90	6	63	60	0	0	39	0.97
4568466--4568500	17	2.1	17	88	0	52	48	2	2	45	1.32
4571878--4571946	35	2.0	35	94	0	120	30	8	20	40	1.82
4573121--4573184	28	2.2	28	83	10	85	53	3	1	42	1.26
4573126--4573184	30	2.1	28	87	9	84	52	3	1	42	1.28
4577725--4577800	38	2.0	38	94	0	134	23	9	14	52	1.70
4581525--4581557	12	2.8	12	90	4	50	78	0	12	9	0.95
4586820--4586861	12	3.6	12	87	3	59	69	0	0	30	0.89
4589995--4590044	24	2.1	24	81	7	57	20	12	8	60	1.57
4591567--4591673	56	1.9	56	92	0	178	25	12	22	40	1.88
4593919--4593962	22	2.0	22	95	0	79	29	9	15	45	1.77
4597940--4597977	18	2.1	18	100	0	76	23	10	15	50	1.75
4597935--4597974	18	2.3	17	87	8	62	25	10	15	50	1.74
4599382--4599819	22	19.9	22	67	12	121	46	5	11	37	1.62
4599713--4600042	44	7.4	44	72	11	190	43	6	10	39	1.64
4599931--4599969	19	2.1	19	90	0	60	46	10	5	38	1.60
4599833--4600042	22	9.7	22	71	9	110	43	7	9	40	1.65
4600045--4600094	22	2.3	22	78	0	55	52	8	4	36	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4600214--4600256	21	2.1	20	82	4	50	55	4	0	39	1.20
4600367--4600455	21	4.1	22	75	16	80	50	6	5	37	1.52
4600381--4600506	21	5.7	21	72	15	85	48	7	6	38	1.56
4600449--4600504	27	2.1	27	93	0	94	50	8	5	35	1.57
4600629--4600660	2	17.0	2	87	12	50	46	0	0	53	1.00
4603816--4603872	29	2.0	29	100	0	114	17	21	22	38	1.93
4613312--4613774	62	7.8	60	81	10	481	36	12	6	44	1.69
4613312--4613774	123	3.9	120	83	7	498	36	12	6	44	1.69
4613788--4613873	4	20.8	4	73	14	52	72	1	2	24	1.04
4613782--4613832	15	3.7	14	82	12	61	76	0	5	17	0.98
4613793--4613886	9	10.4	8	71	21	53	74	1	1	23	0.95
4613793--4613832	17	2.2	19	86	8	57	80	0	2	17	0.83
4614868--4614908	15	2.7	16	85	7	59	70	2	2	24	1.11
4614876--4614976	6	16.5	6	71	19	50	75	3	2	17	1.09
4615212--4615299	1	88.0	1	72	0	68	1	2	10	86	0.72
4615203--4615296	9	10.9	8	80	15	91	1	3	10	85	0.77
4615203--4615297	18	5.4	17	86	6	120	1	3	10	85	0.76
4615203--4615299	51	1.9	51	89	4	151	1	3	10	85	0.75
4615314--4615563	41	6.0	41	88	4	317	37	22	16	24	1.93
4615315--4615558	83	3.0	82	88	4	339	38	22	15	23	1.93
4626971--4627061	27	3.1	28	71	22	89	42	15	3	38	1.63
4626973--4627363	58	6.7	57	78	10	353	37	13	5	43	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4627382--4627423	4	9.8	4	87	12	57	73	0	4	21	1.01
4627382--4627423	22	2.0	21	95	4	75	73	0	4	21	1.01
4627376--4627493	26	4.4	26	69	24	84	69	1	6	22	1.21
4627998--4628027	13	2.3	13	94	0	51	60	6	10	23	1.52
4628465--4628505	15	2.7	16	85	7	59	70	2	2	24	1.11
4630822--4630883	26	2.3	27	83	10	83	20	1	3	74	1.05
4632382--4632449	21	3.3	21	72	4	66	36	7	8	47	1.63
4632431--4632518	21	4.1	21	72	10	63	40	9	7	42	1.66
4632480--4632528	22	2.2	22	85	0	62	34	8	12	44	1.71
4634886--4634931	17	2.7	17	79	0	56	47	2	0	50	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127