Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  55  of  127  ( 15156 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10873934--10874003
24
3.0
24
77
8
81
55
1
0
42
1.08
10874491--10874536
17
2.8
15
81
18
56
63
2
0
34
1.07
10878584--10878622
2
19.5
2
89
0
60
46
2
2
48
1.29
10882084--10882116
7
4.6
7
96
3
57
72
3
0
24
0.98
10882673--10882705
7
5.0
7
89
10
52
30
39
30
0
1.57
10886170--10886214
19
2.4
18
82
10
54
46
2
2
48
1.26
10888972--10889005
7
4.7
7
92
7
59
76
0
0
23
0.79
10888971--10889012
8
5.5
8
91
5
61
78
0
0
21
0.75
10888973--10889023
14
3.7
14
78
19
54
76
0
0
23
0.79
10888972--10889005
15
2.3
15
95
5
61
76
0
0
23
0.79
10888971--10889017
22
2.2
21
85
11
60
78
0
0
21
0.75
10890151--10890198
23
2.1
23
100
0
96
43
16
12
27
1.84
10891617--10891682
29
2.2
30
86
2
89
39
1
21
37
1.63
10892754--10892871
41
2.9
39
81
6
146
42
5
14
37
1.70
10894648--10894681
17
2.0
17
94
0
59
44
23
0
32
1.54
10895436--10895470
4
8.8
4
100
0
70
25
22
0
51
1.48
10895430--10895492
4
15.8
4
96
0
54
36
12
0
50
1.41
10895432--10895490
12
4.9
12
91
0
64
35
13
0
50
1.42
10900865--10900897
16
2.1
16
94
0
57
33
6
9
51
1.58
10905171--10905213
19
2.3
19
100
0
86
23
20
20
34
1.96
10910712--10910767
29
1.9
29
85
0
76
30
8
5
55
1.53
10911282--10911423
62
2.3
62
95
1
250
42
6
11
39
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10911534--10911601
28
2.3
29
87
10
102
42
8
0
48
1.34
10912498--10912569
1
72.0
1
80
0
54
86
1
9
2
0.74
10913364--10913419
29
2.0
28
82
10
69
51
3
0
44
1.18
10913792--10913848
16
3.4
16
79
11
60
82
3
12
1
0.87
10914450--10914493
19
2.2
20
84
4
54
79
6
2
11
1.01
10915517--10915558
21
2.0
22
95
4
77
40
2
0
57
1.12
10916064--10916113
25
2.0
26
88
4
75
32
18
32
18
1.94
10917104--10917146
22
2.0
23
86
9
63
51
25
2
20
1.60
10923906--10923946
16
2.5
16
88
4
55
0
14
2
82
0.76
10933331--10933384
26
2.1
26
89
0
81
48
5
1
44
1.37
10933347--10933397
25
2.0
25
85
7
68
43
5
3
47
1.46
10933480--10933518
13
3.1
13
85
3
53
71
2
0
25
0.98
10933785--10933824
21
2.0
20
95
5
71
0
40
0
60
0.97
10933785--10933826
19
2.2
20
91
4
68
0
40
0
59
0.97
10934249--10934304
19
2.9
19
86
5
78
71
0
3
25
1.02
10934265--10934300
16
2.2
16
90
0
54
69
0
2
27
1.02
10940911--10941206
62
4.8
63
72
8
171
41
9
13
35
1.78
10940974--10941273
122
2.4
122
80
4
318
41
10
12
36
1.76
10940974--10941315
122
2.8
122
78
4
287
42
10
12
35
1.77
10941751--10941805
28
2.0
28
86
10
78
47
20
5
27
1.72
10941818--10941981
62
2.7
60
72
5
148
35
12
12
39
1.81
10942732--10942799
11
6.1
11
76
13
50
63
2
0
33
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10953761--10953813
16
3.2
16
78
17
56
77
0
18
3
0.92
10953763--10953821
14
4.1
14
77
12
57
74
0
20
5
1.00
10956855--10956904
21
2.3
21
96
3
91
60
0
4
36
1.16
10956918--10956982
20
3.3
19
74
18
62
60
0
3
36
1.13
10957905--10957961
18
3.3
17
74
18
55
71
0
5
22
1.05
10957906--10958001
34
2.9
31
76
13
86
73
2
5
18
1.11
10959355--10959731
43
8.7
43
76
10
338
39
15
16
28
1.88
10961613--10961764
61
2.5
61
89
2
236
47
6
11
34
1.66
10961761--10961920
58
2.8
57
81
6
180
50
5
8
35
1.57
10961862--10961899
15
2.4
16
86
4
51
68
0
2
28
1.03
10972375--10972421
16
3.4
14
81
16
53
87
0
4
8
0.67
10973432--10973941
41
12.2
41
83
3
581
26
11
18
43
1.84
10975083--10975380
60
5.1
59
77
11
310
48
5
9
37
1.57
10975222--10975331
51
2.1
53
81
6
127
50
6
10
31
1.62
10981801--10981838
17
2.2
17
90
0
58
15
0
47
36
1.46
10987919--10987968
20
2.4
22
80
9
61
50
0
0
50
1.00
10988028--10988091
23
2.7
23
78
4
65
50
0
3
46
1.17
10988032--10988091
25
2.5
23
79
10
66
50
0
3
46
1.18
10989676--10989734
10
6.0
10
71
11
50
54
3
1
40
1.27
10989656--10989721
28
2.3
29
84
5
80
50
4
3
42
1.38
10989679--10989733
21
2.9
19
79
15
69
56
3
1
38
1.28
10989678--10989792
18
6.0
17
68
21
59
58
3
1
36
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10989808--10989849
9
4.7
9
77
11
50
73
7
2
16
1.15
10989817--10989856
18
2.2
18
86
0
62
75
5
2
17
1.10
10989751--10989877
19
6.8
19
72
12
61
61
4
1
32
1.26
10989788--10989868
29
2.9
28
71
14
76
65
7
1
25
1.26
10989864--10989934
24
2.9
25
75
12
58
60
4
1
33
1.25
10989910--10989960
18
2.7
19
82
8
61
54
3
1
39
1.30
10990088--10990164
32
2.5
31
81
8
84
38
1
1
58
1.15
10990088--10990148
11
5.5
11
80
11
63
39
1
1
57
1.18
10990128--10990174
20
2.3
20
85
10
60
31
0
2
65
1.04
10990300--10990361
32
2.0
31
84
9
81
30
4
1
62
1.25
10991872--10992064
97
2.0
97
88
0
287
24
11
11
52
1.70
10992706--10992803
34
2.9
32
80
11
106
41
6
8
43
1.59
10992978--10993019
21
2.0
21
85
0
57
30
0
16
52
1.44
10995825--10995868
20
2.2
20
84
8
54
29
6
15
47
1.72
10996085--10996148
21
2.7
23
79
13
69
32
1
6
59
1.32
10996173--10996228
17
3.4
17
85
2
69
35
3
3
57
1.34
10996839--10996872
17
2.0
18
88
11
54
61
0
0
38
0.96
10996823--10996861
16
2.4
16
87
8
53
64
2
0
33
1.08
10996934--10997190
135
1.9
135
89
0
397
48
6
6
39
1.54
11006403--11006450
18
2.6
17
81
18
53
58
0
6
35
1.23
11006518--11006602
43
2.0
44
86
6
120
50
0
3
45
1.18
11016139--11016181
18
2.3
18
88
8
59
74
6
2
16
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11016157--11016208
17
3.0
18
86
10
65
67
1
0
30
1.02
11016229--11016274
24
1.9
24
82
8
58
63
2
2
32
1.19
11016393--11016460
28
2.4
28
71
9
66
41
1
5
51
1.35
11016437--11016463
8
3.4
8
100
0
54
55
0
0
44
0.99
11016382--11016496
56
2.1
56
83
3
142
43
0
4
51
1.27
11016466--11016569
18
6.0
18
68
13
58
31
0
2
65
1.07
11016364--11016499
56
2.4
54
77
8
137
38
1
4
55
1.29
11016466--11016552
36
2.4
35
79
9
95
32
0
3
64
1.10
11016534--11016567
15
2.3
15
100
0
68
29
0
0
70
0.87
11018207--11018401
97
2.0
97
89
0
300
25
12
10
51
1.72
11018685--11019315
315
2.0
313
94
1
1093
34
18
7
38
1.79
11022434--11022485
20
2.5
20
72
9
52
25
3
17
53
1.60
11022715--11022770
24
2.5
23
86
11
73
39
1
3
55
1.28
11022759--11022801
19
2.2
19
87
4
59
46
2
0
51
1.13
11022794--11022828
18
2.0
17
94
5
61
28
0
5
65
1.15
11022794--11022847
16
3.3
15
80
14
54
33
1
3
61
1.25
11022807--11022855
16
3.0
16
84
3
62
34
2
2
61
1.19
11024177--11024221
19
2.4
19
100
0
90
24
24
26
24
2.00
11031871--11031911
20
2.1
20
86
4
57
58
2
7
31
1.38
11032976--11033074
20
4.9
20
71
25
57
50
2
2
45
1.24
11033017--11033124
5
22.4
5
68
17
68
47
0
0
50
1.13
11033015--11033123
39
2.8
40
83
6
111
48
0
0
49
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11033008--11033123
14
8.6
13
75
16
87
48
0
0
50
1.13
11033008--11033124
20
6.2
19
79
10
125
47
0
0
50
1.12
11035068--11035102
16
2.1
17
89
5
54
74
0
5
20
1.02
11035665--11035709
20
2.3
19
88
7
63
80
8
6
4
1.03
11035664--11035719
21
2.7
21
81
10
62
78
7
8
5
1.08
11036323--11036377
12
4.3
13
84
9
51
70
3
14
10
1.28
11036323--11036370
12
3.8
13
89
8
64
70
4
14
10
1.29
11036329--11036385
12
4.4
14
82
10
59
73
3
12
10
1.21
11036348--11036385
7
5.6
7
87
3
51
76
2
10
10
1.12
11036367--11036405
16
2.4
16
86
4
51
76
7
7
7
1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127