genome.fa.s656.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  15  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3566037--3566105	33	2.2	29	85	10	84	47	1	5	44	1.35
3570096--3570141	18	2.6	18	82	0	56	41	15	23	19	1.89
3573044--3573086	22	2.0	20	86	8	59	39	4	6	48	1.51
3573420--3573458	20	2.0	20	89	0	60	46	2	0	51	1.14
3573999--3574058	10	6.4	9	72	14	50	56	0	0	43	0.99
3574006--3574063	20	3.0	21	69	21	63	58	0	0	41	0.98
3574000--3574062	17	3.5	17	72	17	56	58	0	0	41	0.98
3574072--3574117	22	2.1	22	84	8	58	43	2	0	54	1.12
3579873--3579912	21	1.9	21	84	0	53	72	0	7	20	1.08
3582317--3582364	13	3.8	12	78	8	51	12	6	2	79	1.01
3583448--3583491	23	1.9	23	85	0	61	50	4	0	45	1.22
3588264--3588332	18	3.7	18	72	20	61	50	0	5	43	1.26
3588265--3588305	20	2.0	20	86	9	57	56	0	4	39	1.21
3588491--3588526	18	1.9	19	88	5	56	13	11	0	75	1.06
3592735--3592813	39	2.0	39	92	0	131	53	11	12	22	1.71
3595795--3595834	20	2.0	20	90	0	62	52	12	10	25	1.70
3601390--3601442	24	2.2	24	86	6	72	43	3	0	52	1.19
3601407--3601459	24	2.3	24	83	6	65	47	3	1	47	1.31
3603478--3603523	23	2.0	24	86	4	67	50	2	0	47	1.13
3603609--3603660	27	2.0	27	82	10	65	42	3	0	53	1.19
3603631--3603677	21	2.2	21	92	0	76	44	2	0	53	1.12
3603634--3603691	21	2.7	21	84	10	64	41	5	0	53	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3605005--3605032	3	9.3	3	100	0	56	32	0	67	0	0.91
3610768--3610953	92	2.0	92	95	0	336	38	16	7	38	1.77
3615561--3615603	22	2.0	22	81	9	52	44	6	6	41	1.58
3615746--3615784	19	2.0	20	90	5	62	64	0	2	33	1.08
3619430--3619929	255	2.0	254	85	3	684	25	21	18	34	1.96
3622432--3622723	156	1.9	157	87	3	437	26	25	14	34	1.94
3625025--3625061	18	2.0	20	89	10	60	0	24	10	64	1.25
3629336--3629382	3	15.7	3	86	0	67	61	2	4	31	1.27
3630702--3630735	2	17.0	2	100	0	68	50	0	0	50	1.00
3632324--3632348	1	25.0	1	100	0	50	0	0	0	100	0.00
3642573--3642863	156	1.9	156	88	1	449	25	25	14	34	1.94
3645163--3645199	18	2.0	20	89	10	60	0	24	10	64	1.25
3649492--3649550	3	19.7	3	85	0	82	61	1	5	32	1.28
3668194--3668317	60	2.1	60	93	1	214	12	14	17	54	1.70
3671283--3671359	6	13.2	6	71	19	56	57	1	0	41	1.07
3671283--3671359	20	4.1	19	76	12	70	57	1	0	41	1.07
3671283--3671378	32	3.0	32	79	14	110	57	3	0	39	1.15
3687841--3687924	3	28.0	3	79	4	71	2	41	0	55	1.12
3692887--3692978	48	1.9	48	93	0	157	45	11	8	33	1.72
3697243--3697287	24	1.9	23	90	4	72	51	0	0	48	1.00
3697705--3697750	20	2.3	20	88	3	67	47	2	8	41	1.46
3700482--3700816	168	2.0	167	90	1	528	40	10	12	37	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3702443--3702474	12	2.6	13	80	19	50	56	0	0	43	0.99
3702141--3703006	447	1.9	446	84	4	1118	44	7	10	37	1.68
3705459--3705544	15	5.7	15	73	10	77	20	39	15	24	1.91
3705475--3705571	45	2.2	45	98	0	185	22	40	16	20	1.91
3705579--3705614	18	2.0	18	100	0	72	16	22	44	16	1.86
3706797--3706823	4	6.8	4	100	0	54	25	0	22	51	1.48
3707316--3707376	32	1.9	32	89	0	95	32	14	8	44	1.75
3709297--3709342	20	2.3	20	88	3	67	47	2	8	41	1.46
3710060--3710118	31	1.9	31	85	0	82	25	11	15	47	1.79
3716570--3716610	15	2.7	15	92	0	64	19	36	14	29	1.92
3718346--3718406	32	1.9	32	89	0	95	32	14	8	44	1.75
3718544--3718580	18	2.2	18	85	9	51	40	0	5	54	1.24
3722426--3722451	11	2.4	11	100	0	52	88	0	11	0	0.52
3724149--3724178	2	15.0	2	92	0	51	0	3	50	46	1.18
3728853--3728878	2	13.0	2	100	0	52	50	0	0	50	1.00
3729056--3729149	19	4.9	19	74	10	66	29	4	6	59	1.41
3729057--3729141	29	2.9	28	75	6	80	29	4	5	60	1.41
3729416--3729457	19	2.2	20	86	4	59	42	0	4	52	1.22
3730333--3730371	18	2.0	20	90	9	64	43	2	0	53	1.14
3730850--3730911	31	2.0	31	93	0	106	27	11	8	53	1.64
3732202--3732245	12	3.0	16	68	25	51	27	18	13	40	1.88
3733946--3733993	18	2.5	20	86	10	64	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3736765--3736898	66	2.0	65	92	5	225	34	3	22	39	1.72
3737104--3737156	21	2.4	22	84	12	65	49	0	1	49	1.12
3740195--3740242	21	2.2	22	92	3	80	45	0	2	52	1.12
3743799--3743833	6	5.8	6	96	0	61	37	34	28	0	1.58
3743795--3743835	18	2.3	18	86	0	64	41	34	24	0	1.55
3747440--3747481	19	2.2	20	86	4	59	42	0	4	52	1.22
3748358--3748394	17	2.1	19	90	10	60	45	2	0	51	1.15
3748872--3748933	31	2.0	31	93	0	106	27	11	8	53	1.64
3750223--3750266	12	3.0	16	68	25	51	27	18	13	40	1.88
3750624--3750682	24	2.5	24	94	5	102	33	16	13	35	1.88
3750667--3750710	12	3.0	16	68	25	51	27	18	13	40	1.88
3750199--3752845	444	6.0	444	97	0	5051	38	10	19	32	1.85
3751068--3751126	24	2.5	24	94	5	102	33	16	13	35	1.88
3751512--3751570	24	2.5	24	91	5	93	35	16	11	35	1.86
3751956--3752014	24	2.5	24	94	5	102	33	16	13	35	1.88
3751999--3752042	12	3.0	16	68	25	51	27	18	13	40	1.88
3752400--3752458	24	2.5	24	91	5	93	35	16	11	35	1.86
3754161--3754213	21	2.4	21	93	6	88	49	0	0	50	1.00
3757261--3757313	21	2.4	21	90	6	79	49	0	1	49	1.12
3760339--3760389	21	2.3	21	90	6	75	47	0	1	50	1.12
3761497--3761538	2	21.5	2	85	4	59	47	0	0	52	1.00
3761873--3761919	2	23.5	2	100	0	94	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3764038--3764072	6	5.8	6	96	0	61	37	34	28	0	1.58
3764034--3764074	18	2.3	18	86	0	64	41	34	24	0	1.55
3766737--3766777	21	2.0	21	90	0	64	48	4	31	14	1.65
3769958--3770003	22	2.0	21	84	12	56	47	2	0	50	1.13
3770038--3770071	12	2.8	12	86	0	50	67	5	0	26	1.13
3773053--3773085	15	2.4	14	90	10	50	60	0	0	39	0.97
3774821--3774862	16	2.6	16	88	0	57	50	4	4	40	1.45
3774836--3774891	16	3.4	16	80	2	58	51	5	1	41	1.35
3776331--3776400	32	2.2	32	82	5	88	34	4	12	48	1.61
3776464--3776494	1	31.0	1	100	0	62	0	0	0	100	0.00
3777258--3777308	6	8.5	6	88	0	75	60	15	21	1	1.44
3778412--3778445	17	2.0	17	100	0	68	17	17	0	64	1.29
3780444--3780487	23	2.0	24	86	13	67	65	2	15	15	1.36
3780842--3780964	30	4.1	29	79	10	108	41	6	0	51	1.33
3780869--3780964	30	3.2	30	86	4	131	42	6	1	50	1.34
3780842--3780956	59	1.9	60	82	8	146	40	6	0	53	1.32
3780884--3780972	31	2.9	31	86	5	119	39	4	1	55	1.28
3780996--3781069	29	2.5	30	82	2	96	54	4	5	36	1.43
3781998--3782035	19	2.0	20	89	5	60	44	2	2	50	1.30
3794896--3794943	18	2.7	18	87	3	62	60	8	4	27	1.44
3795460--3795506	15	2.9	16	78	6	51	51	14	14	19	1.77
3795441--3795506	32	2.0	32	85	8	89	51	13	13	21	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3795616--3795681	34	1.9	34	90	0	105	39	18	10	31	1.85
3795653--3795747	17	5.5	18	76	6	72	40	9	11	38	1.74
3795926--3796284	46	7.9	46	75	9	245	43	15	7	33	1.75
3796063--3796284	93	2.4	91	79	4	241	44	13	6	35	1.70
3799614--3800087	153	3.0	159	90	4	744	39	16	15	28	1.89
3800120--3800150	1	31.0	1	100	0	62	100	0	0	0	0.00
3800103--3800143	12	3.0	14	86	10	50	85	4	0	9	0.73
3800471--3800516	20	2.3	20	84	0	56	17	21	28	32	1.96
3800534--3800576	20	2.2	20	100	0	86	4	25	32	37	1.77
3800540--3800584	20	2.2	20	88	0	63	11	24	33	31	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127