genome.fa.s656.2.7.7.80.10.50.1000.82.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  82  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15671747--15672275	251	2.1	251	82	4	622	33	14	13	38	1.85
15672288--15672342	24	2.3	25	81	9	78	27	7	18	47	1.74
15672524--15672572	24	2.0	24	88	0	71	22	4	18	55	1.60
15674897--15675117	19	10.9	19	70	14	72	46	29	2	21	1.64
15674998--15675067	25	2.8	25	79	14	72	44	30	1	24	1.62
15674869--15675104	13	18.2	13	66	20	68	46	30	2	20	1.63
15675019--15675104	40	2.2	39	85	6	111	47	31	2	18	1.61
15675055--15675117	25	2.4	26	82	7	76	49	30	1	19	1.58
15675049--15675101	7	7.9	7	78	16	58	49	33	1	15	1.55
15687580--15687614	17	2.1	17	94	0	61	60	0	2	37	1.12
15691083--15691190	57	1.9	57	88	3	164	53	7	12	26	1.64
15691591--15691643	23	2.2	24	83	3	72	30	5	11	52	1.60
15705266--15705306	9	4.9	8	91	5	64	82	14	0	2	0.76
15705266--15705307	17	2.5	17	92	7	68	80	16	0	2	0.81
15705386--15705427	21	2.0	21	90	9	68	33	57	4	4	1.41
15705666--15705710	18	2.6	18	83	13	51	80	11	8	0	0.92
15707929--15707974	3	15.3	3	100	0	92	65	0	0	34	0.93
15709242--15709266	1	25.0	1	100	0	50	100	0	0	0	0.00
15712722--15712766	20	2.2	20	92	7	74	51	2	0	46	1.13
15712756--15712788	16	2.0	17	94	5	59	60	0	0	39	0.97
15712759--15712811	22	2.4	22	80	0	61	66	0	0	33	0.92
15716058--15716150	46	2.0	46	100	0	186	44	0	6	49	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15716277--15716311	14	2.4	15	90	4	54	48	0	0	51	1.00
15718575--15718628	21	2.6	20	77	8	54	53	3	0	42	1.18
15718568--15718639	22	3.4	20	72	11	63	50	2	0	47	1.15
15723680--15723739	19	3.2	19	97	2	113	20	20	0	60	1.37
15724693--15724730	20	2.0	20	89	5	60	47	5	7	39	1.55
15729029--15729073	14	3.2	13	87	9	54	37	11	22	28	1.88
15730181--15730213	2	16.5	2	100	0	66	51	0	0	48	1.00
15732192--15732248	16	3.6	16	76	2	53	40	1	3	54	1.28
15741711--15741758	15	3.1	16	78	6	62	37	2	4	56	1.30
15741842--15741883	6	7.2	6	89	5	68	33	0	14	52	1.42
15742245--15742284	6	6.7	6	100	0	80	50	15	35	0	1.44
15743627--15743672	19	2.5	19	89	3	67	41	6	8	43	1.61
15745090--15745122	17	2.0	17	88	5	50	78	3	6	12	1.04
15754130--15754523	41	9.5	42	86	4	412	26	14	19	39	1.90
15754130--15754543	81	5.0	82	84	4	406	26	14	19	39	1.90
15754130--15754462	122	2.7	122	85	6	422	26	14	20	38	1.91
15754424--15754558	42	3.2	42	89	3	191	24	14	17	44	1.85
15754301--15754558	41	6.2	42	82	4	199	24	13	18	42	1.88
15755495--15755540	17	2.8	17	84	12	60	78	2	0	19	0.86
15758244--15758287	23	1.9	23	100	0	88	43	0	25	31	1.55
15763669--15763702	9	3.8	9	96	0	59	38	11	5	44	1.65
15764042--15764104	26	2.5	26	84	7	76	41	1	3	53	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15764181--15764221	19	2.1	20	86	4	57	26	19	7	46	1.76
15764184--15764225	10	4.3	10	75	6	50	26	16	9	47	1.77
15768907--15768940	16	2.1	17	88	5	52	32	5	14	47	1.69
15771352--15771381	12	2.5	12	94	0	51	0	3	6	90	0.56
15771716--15771774	25	2.4	25	76	0	64	8	13	1	76	1.09
15772320--15772366	11	4.5	10	80	17	51	4	10	0	85	0.74
15772337--15772366	13	2.4	13	94	5	53	3	6	0	90	0.56
15775067--15775132	33	2.1	32	94	5	116	40	13	15	30	1.85
15776934--15777023	41	2.2	41	82	9	105	17	1	35	45	1.56
15776944--15777134	29	6.5	29	75	13	113	17	1	35	45	1.58
15782370--15782418	22	2.2	23	89	10	75	44	0	6	48	1.27
15782370--15782432	22	2.9	22	84	13	60	39	0	6	53	1.26
15783285--15783345	30	2.1	29	84	6	79	59	0	1	39	1.08
15789444--15789474	12	2.7	12	95	5	55	0	6	0	93	0.35
15789441--15789476	14	2.5	15	86	9	56	0	11	0	88	0.50
15797464--15797500	2	19.5	2	86	10	51	51	2	0	45	1.15
15797508--15797553	19	2.4	19	85	0	65	30	6	21	41	1.78
15797520--15797563	19	2.2	19	84	8	52	29	6	22	40	1.80
15797738--15798337	230	2.6	237	86	4	833	39	9	5	45	1.60
15800166--15800214	15	3.3	15	71	23	50	57	0	0	42	0.99
15800165--15800205	17	2.5	17	80	11	50	60	0	0	39	0.96
15800148--15800221	29	2.4	30	80	13	80	59	2	0	37	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15801104--15801146	19	2.2	20	88	8	63	23	13	25	37	1.92
15801216--15801324	31	3.5	31	77	5	96	39	11	7	41	1.70
15802978--15803011	13	2.6	13	90	0	50	44	0	17	38	1.49
15803719--15803744	12	2.2	12	100	0	52	50	0	0	50	1.00
15810373--15810399	2	13.5	2	100	0	54	51	0	0	48	1.00
15812988--15813029	17	2.7	15	82	13	50	16	4	0	78	0.91
15812988--15813029	14	2.7	17	86	13	56	16	4	0	78	0.91
15814754--15814804	18	2.7	18	77	19	50	60	1	1	35	1.19
15815536--15815808	64	4.6	58	84	10	338	38	12	6	43	1.68
15815538--15815808	57	4.6	58	84	9	343	38	12	6	43	1.67
15815536--15815808	123	2.3	115	86	8	363	38	12	6	43	1.68
15815833--15815887	5	11.4	5	88	11	80	81	0	0	18	0.68
15815833--15815896	10	5.9	11	89	9	80	81	0	0	18	0.70
15815833--15815896	16	4.0	16	87	6	85	81	0	0	18	0.70
15816757--15816857	6	14.8	6	78	15	60	64	0	2	31	1.15
15816745--15816870	22	5.7	23	78	17	72	63	0	3	32	1.16
15816769--15816966	39	4.9	40	76	13	167	65	2	3	29	1.19
15816726--15816938	61	3.5	60	75	14	183	63	0	3	31	1.18
15816744--15816975	4	58.2	4	70	16	96	65	1	3	30	1.18
15816745--15816935	81	2.3	81	79	11	203	63	1	3	31	1.16
15816949--15817006	5	11.0	5	78	14	55	74	1	1	22	1.01
15816949--15817006	13	4.9	11	80	15	55	74	1	1	22	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15817189--15817507	41	7.4	41	79	9	293	37	21	15	25	1.93
15817229--15817507	126	2.2	129	82	5	352	36	21	15	26	1.93
15818509--15818543	17	2.1	16	89	5	52	11	11	0	77	1.00
15818509--15818543	16	2.1	17	89	5	54	11	11	0	77	1.00
15828950--15829332	120	3.2	119	84	7	418	38	13	7	40	1.74
15828992--15829336	58	5.8	59	79	9	353	37	13	8	41	1.74
15829357--15829408	12	4.5	12	83	11	65	84	0	1	13	0.70
15829358--15829407	26	2.0	25	88	11	75	86	0	2	12	0.67
15830295--15830372	22	3.7	20	77	8	66	62	0	6	30	1.20
15830313--15830526	4	54.2	4	68	17	94	65	1	3	29	1.19
15830314--15830487	39	4.7	37	79	14	166	64	1	3	31	1.17
15830313--15830488	81	2.2	81	80	9	191	64	1	3	30	1.17
15830483--15830538	29	1.9	29	85	7	78	69	3	1	25	1.14
15830501--15830536	6	6.5	6	84	15	51	72	0	0	27	0.85
15830501--15830536	10	3.3	11	92	7	56	72	0	0	27	0.85
15830513--15830553	7	6.1	7	91	5	50	70	4	0	24	1.06
15830479--15830557	19	3.9	19	74	14	61	70	5	1	22	1.14
15832082--15832163	36	2.4	34	81	8	94	25	6	10	57	1.56
15834932--15834970	20	2.0	20	85	10	53	17	5	2	74	1.12
15835054--15835109	21	2.9	19	80	12	69	39	5	7	48	1.54
15840942--15840985	19	2.3	19	80	0	52	22	20	20	36	1.95
15841725--15841784	18	3.2	19	75	13	61	33	6	8	51	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15841724--15841771	21	2.5	20	77	12	55	31	8	10	50	1.66
15844620--15844665	20	2.3	20	85	3	58	28	4	8	58	1.47
15844882--15844928	23	2.0	23	100	0	94	25	8	12	53	1.67
15844991--15845041	24	2.1	24	82	7	59	45	33	3	17	1.67
15846207--15846260	23	2.3	23	83	6	72	22	12	11	53	1.70
15850354--15850386	17	1.9	17	93	0	57	81	0	9	9	0.87
15851046--15851115	14	4.9	14	75	10	61	80	0	15	4	0.87
15851068--15851097	13	2.3	13	100	0	60	86	0	6	6	0.70
15851067--15851117	23	2.3	23	86	3	68	82	0	11	5	0.83
15851068--15851117	13	4.4	11	79	20	50	84	0	10	6	0.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127