genome.fa.s656.2.7.7.80.10.50.1000.70.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  70  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13611854--13612044	35	5.5	35	82	7	201	47	30	0	21	1.52
13613924--13613977	27	1.9	29	88	7	85	77	3	9	9	1.09
13614620--13614661	9	4.8	9	79	5	50	76	2	14	7	1.10
13614758--13614795	20	1.9	21	89	10	62	23	0	5	71	1.07
13615059--13615096	13	2.8	14	80	4	51	76	10	10	2	1.12
13616555--13616614	21	2.7	24	77	17	74	60	0	5	35	1.19
13616556--13616589	17	1.9	18	88	5	52	61	0	5	32	1.20
13616555--13616621	21	3.1	21	77	16	66	59	0	5	34	1.22
13619098--13619145	5	9.4	5	84	10	62	39	2	16	41	1.60
13624733--13624773	11	3.8	11	84	9	50	31	2	0	65	1.05
13624745--13624773	6	5.0	6	91	8	51	34	0	0	65	0.93
13624811--13624849	14	2.7	14	88	4	51	46	0	0	53	1.00
13624816--13624849	15	2.4	14	90	5	50	47	0	0	52	1.00
13624962--13625003	13	3.2	13	83	13	50	42	2	0	54	1.13
13636500--13636555	28	2.0	27	83	10	69	62	3	1	32	1.23
13636552--13636596	13	3.5	13	78	6	56	44	2	0	53	1.13
13636537--13636604	6	11.0	6	71	22	52	48	1	0	50	1.10
13636537--13636604	26	2.7	24	82	10	75	48	1	0	50	1.10
13636562--13636604	11	3.6	11	81	12	50	48	2	0	48	1.14
13636623--13636690	21	3.3	20	85	4	73	50	2	0	47	1.16
13636659--13636711	21	2.5	21	87	6	72	39	3	1	54	1.29
13636737--13636854	22	5.9	20	68	20	68	45	3	2	48	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13636799--13636884	22	4.0	21	77	6	82	47	4	2	45	1.36
13636699--13636884	100	1.9	100	80	8	218	46	3	1	48	1.30
13636910--13637000	43	2.1	41	80	9	94	42	5	5	46	1.50
13638020--13638067	16	2.9	17	84	6	71	37	2	0	60	1.09
13646181--13646219	2	19.5	2	100	0	78	0	48	0	51	1.00
13648493--13648527	18	1.9	18	88	11	54	62	2	0	34	1.10
13650915--13651044	2	64.5	2	78	4	136	45	4	3	46	1.42
13654219--13654304	31	2.8	30	77	11	111	51	11	20	16	1.75
13658620--13658660	21	2.0	21	90	0	64	21	17	9	51	1.74
13663025--13663051	13	2.1	13	100	0	54	29	0	22	48	1.51
13664628--13664679	20	2.6	20	84	0	68	36	9	11	42	1.74
13665619--13665684	13	5.1	14	72	22	63	43	12	9	34	1.73
13665841--13665908	32	2.1	33	78	13	79	61	10	1	26	1.36
13665923--13666306	20	19.6	20	71	18	256	52	11	5	30	1.61
13665922--13666219	81	3.7	80	82	8	356	50	12	5	30	1.64
13665923--13666221	61	5.0	61	76	14	248	50	12	5	31	1.64
13665922--13666221	41	7.4	40	82	8	367	50	12	5	31	1.63
13666182--13666330	53	2.8	53	80	17	136	55	10	4	30	1.54
13666123--13666326	90	2.3	91	79	2	241	53	10	5	30	1.57
13666350--13666423	20	3.7	20	85	0	94	54	8	6	31	1.56
13666364--13666442	40	2.0	40	85	7	106	50	11	7	30	1.66
13666490--13666541	26	2.0	26	85	7	70	63	1	5	28	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13667371--13667566	42	4.6	42	78	9	177	37	17	14	30	1.90
13667368--13667561	85	2.3	82	83	7	239	36	19	13	29	1.91
13667506--13667633	67	1.9	67	87	3	186	36	17	16	29	1.92
13667571--13667887	43	7.7	41	74	12	222	40	17	13	27	1.88
13667571--13667887	85	3.8	81	74	12	263	40	17	13	27	1.88
13667819--13667954	68	2.0	67	85	4	184	41	17	14	26	1.88
13667886--13667992	42	2.5	41	79	7	124	40	21	14	24	1.90
13668789--13668839	24	2.1	24	92	0	84	11	19	7	60	1.55
13668789--13668850	24	2.7	23	82	5	79	12	20	6	59	1.55
13674895--13674935	21	2.0	21	85	0	55	58	7	9	24	1.55
13676171--13676837	41	16.1	41	79	12	686	52	11	5	30	1.61
13676169--13676739	79	6.8	80	81	11	602	51	12	5	30	1.62
13676504--13676604	53	1.9	53	89	4	159	52	11	3	31	1.56
13676253--13676795	173	3.1	173	91	5	816	52	12	5	30	1.61
13676335--13676739	214	1.9	221	87	7	614	51	12	5	30	1.61
13676646--13676832	99	1.9	99	87	6	281	54	11	5	28	1.59
13676895--13676933	20	2.0	20	89	0	60	43	15	7	33	1.75
13676957--13677001	16	2.8	16	79	0	54	55	6	6	31	1.52
13676982--13677032	20	2.5	20	83	0	66	47	11	7	33	1.69
13677532--13677576	18	2.5	18	96	0	81	46	8	15	28	1.76
13680504--13680572	30	2.2	30	80	10	77	49	1	4	44	1.31
13680542--13680606	24	2.7	25	83	9	82	46	3	1	49	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13681005--13681064	29	2.0	30	87	3	86	41	3	0	55	1.16
13681730--13681786	23	2.5	22	78	15	71	45	0	0	54	0.99
13681876--13681946	37	1.9	37	85	5	99	43	4	5	46	1.46
13681990--13682169	74	2.4	74	83	8	208	38	6	4	50	1.49
13682093--13682140	24	2.0	24	84	15	64	37	2	4	56	1.30
13681990--13682179	73	2.6	72	83	8	208	37	7	4	51	1.50
13686210--13686584	183	2.0	184	97	0	716	44	14	15	25	1.85
13687963--13688006	20	2.3	19	88	11	63	61	9	4	25	1.45
13690961--13690995	2	17.5	2	87	0	52	45	2	2	48	1.32
13691257--13691307	21	2.5	21	84	6	61	50	5	3	39	1.45
13691944--13692028	44	1.9	44	90	0	134	43	3	10	42	1.56
13692302--13692335	17	2.0	17	88	0	50	47	5	0	47	1.26
13693121--13693179	22	2.7	22	84	5	75	52	3	1	42	1.28
13694209--13694238	14	2.1	14	93	0	51	50	0	0	50	1.00
13694625--13694671	16	2.9	16	80	0	58	42	8	10	38	1.70
13699635--13699718	42	2.0	43	90	2	134	61	4	8	25	1.44
13702910--13702963	27	2.1	26	83	13	67	48	0	3	48	1.19
13702926--13702973	22	2.2	22	85	7	62	45	0	4	50	1.21
13703164--13703209	24	1.9	24	86	0	65	36	17	0	45	1.49
13706833--13706870	18	2.0	19	90	10	60	47	0	2	50	1.15
13706978--13707150	88	2.0	88	82	4	215	39	8	10	41	1.69
13713790--13713837	23	2.1	23	88	0	69	27	18	8	45	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13714906--13714995	9	9.8	9	71	17	53	64	3	5	26	1.31
13714906--13714996	19	4.9	18	72	16	78	64	3	5	26	1.30
13714983--13715040	26	2.2	27	81	9	66	67	6	1	24	1.25
13715259--13715299	21	2.0	21	85	9	57	75	2	0	21	0.92
13715258--13715357	39	2.6	40	76	6	107	69	3	2	26	1.14
13715258--13715301	20	2.2	20	81	18	56	77	2	0	20	0.88
13716113--13716147	12	2.9	12	86	0	52	31	0	8	60	1.27
13717018--13717053	6	6.0	6	90	9	56	16	2	0	80	0.83
13717018--13717051	17	1.9	18	94	5	61	14	2	0	82	0.79
13717166--13717254	45	2.0	46	88	2	135	64	5	10	20	1.45
13717180--13717270	23	4.0	23	71	2	85	56	7	8	27	1.57
13717339--13717381	21	2.0	22	86	9	61	58	11	0	30	1.34
13717339--13717388	18	2.5	21	81	12	61	54	14	0	32	1.40
13717355--13717398	18	2.4	19	81	11	56	61	11	0	27	1.30
13727795--13727902	47	2.3	47	80	3	117	56	12	17	12	1.67
13728324--13728386	32	2.0	32	96	0	117	41	11	15	31	1.83
13728835--13729168	119	2.8	118	80	1	348	18	24	14	42	1.87
13729377--13729482	51	2.0	53	82	7	128	36	5	6	50	1.52
13729512--13729542	13	2.3	14	94	5	55	6	19	0	74	1.03
13730508--13730555	24	2.0	24	95	0	87	58	10	4	27	1.49
13730625--13730667	23	2.0	23	86	9	63	58	11	2	27	1.46
13736967--13737018	14	3.7	14	78	0	59	55	3	36	3	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13738511--13738547	3	12.3	3	100	0	74	67	0	0	32	0.91
13741971--13742178	72	2.9	72	84	4	260	41	10	6	40	1.66
13742181--13742443	72	3.6	72	82	6	282	41	8	5	44	1.59
13742238--13742503	143	1.9	141	82	9	333	41	9	4	44	1.57
13742181--13742503	71	4.5	72	77	10	243	41	9	5	43	1.61
13758179--13758212	6	5.7	6	100	0	68	52	0	0	47	1.00
13758593--13758648	21	2.9	18	75	14	67	30	3	37	28	1.74
13758602--13758644	21	2.0	21	90	0	68	30	2	41	25	1.68
13760315--13760383	28	2.4	27	76	7	66	46	4	4	44	1.43
13762421--13762469	25	1.9	26	91	4	82	40	10	2	46	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127