genome.fa.s656.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  101  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18980978--18981047	30	2.3	30	80	9	81	28	34	22	14	1.93
18987510--18987628	35	3.5	35	78	4	118	34	10	15	39	1.82
18988010--18988136	42	2.9	43	82	13	143	24	12	20	42	1.87
18988009--18988151	48	3.1	47	77	16	149	23	13	19	43	1.87
18988140--18988234	32	2.9	32	84	4	109	25	15	15	43	1.87
18988286--18988434	41	3.6	41	80	3	156	25	15	18	40	1.90
18988174--18988466	76	3.8	75	76	9	232	26	15	17	40	1.90
18988289--18988485	41	5.0	41	72	14	153	27	15	16	39	1.89
18988484--18988576	42	2.3	42	84	3	118	21	10	23	44	1.84
18988538--18988679	66	2.2	66	90	2	223	20	12	23	42	1.86
18988914--18989428	49	10.4	49	77	10	417	29	12	19	38	1.89
18988914--18989446	100	5.4	99	80	8	489	30	12	19	38	1.88
18988964--18989388	147	2.9	147	91	2	640	29	11	20	37	1.88
18989662--18989712	21	2.3	23	80	6	61	60	1	3	33	1.26
18989770--18989855	40	2.1	41	84	2	111	19	46	6	26	1.75
18989798--18989829	11	2.8	12	86	13	50	15	43	6	34	1.72
18990699--18990745	17	2.8	17	78	12	60	25	0	2	72	0.96
18990720--18990763	21	2.1	21	82	0	52	25	2	2	70	1.10
18992802--18992837	18	1.9	19	88	5	56	75	2	2	19	1.06
18992812--18992876	34	1.9	34	90	6	105	73	1	4	20	1.08
18992812--18992885	18	4.2	18	76	11	73	74	1	5	18	1.08
18993715--18993775	12	4.8	12	77	16	52	78	3	18	0	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18993723--18993769	15	2.9	17	75	15	55	78	0	21	0	0.75
18993773--18993801	6	4.8	6	100	0	58	68	0	0	31	0.89
18993798--18993861	3	22.3	3	78	9	71	60	1	3	34	1.22
18993798--18993846	11	4.6	11	80	14	59	65	2	0	32	1.04
18993783--18993846	14	4.2	15	79	18	71	65	1	0	32	1.02
18993798--18993866	14	4.9	14	85	7	77	59	1	4	34	1.26
18994156--18994665	115	4.4	115	72	8	348	47	16	18	17	1.84
19005101--19005199	43	2.3	43	84	6	137	60	5	12	22	1.51
19005940--19005981	20	2.1	20	100	0	84	28	0	9	61	1.27
19007012--19007105	3	32.3	3	82	6	122	61	1	3	34	1.19
19007041--19007143	12	8.6	12	74	15	56	55	3	2	37	1.33
19008365--19008555	96	2.0	96	86	4	269	38	4	6	50	1.48
19009053--19009096	20	2.1	21	84	12	56	40	0	4	54	1.21
19011396--19011427	2	16.0	2	100	0	64	50	0	0	50	1.00
19014431--19014461	1	31.0	1	100	0	62	100	0	0	0	0.00
19021292--19021353	31	2.0	31	84	6	81	41	8	6	43	1.60
19021880--19021921	15	2.8	15	85	7	50	9	38	0	52	1.34
19022376--19022402	1	27.0	1	100	0	54	100	0	0	0	0.00
19024306--19024355	18	2.8	18	81	9	57	48	10	0	42	1.37
19024785--19024833	9	5.2	9	82	7	62	36	0	2	61	1.08
19024785--19024833	10	5.1	10	85	5	66	36	0	2	61	1.08
19024785--19024833	19	2.6	19	87	6	64	36	0	2	61	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19024907--19024941	18	2.0	18	94	5	63	45	0	5	48	1.26
19024907--19024951	17	2.6	18	83	13	58	48	0	4	46	1.22
19024913--19024956	19	2.4	18	80	3	52	54	0	2	43	1.12
19024944--19024989	21	2.2	21	84	7	58	32	0	6	60	1.22
19024965--19025031	29	2.2	31	81	5	84	35	0	7	56	1.27
19024944--19025048	50	2.1	49	84	8	131	35	0	7	57	1.27
19024986--19025024	20	1.9	21	89	5	62	43	0	7	48	1.31
19024985--19025029	20	2.2	20	80	7	56	37	0	6	55	1.26
19025068--19025116	20	2.3	21	82	10	64	32	0	12	55	1.37
19026016--19026072	28	2.0	28	93	0	96	35	5	5	54	1.46
19026624--19026696	30	2.5	30	84	2	85	64	2	1	31	1.16
19029016--19029083	18	3.5	19	78	10	66	60	0	2	36	1.12
19029017--19029098	29	2.8	29	78	10	87	62	0	3	34	1.13
19029077--19029125	17	2.9	17	77	11	57	61	2	6	30	1.32
19029118--19029178	21	3.0	21	75	13	65	59	8	4	27	1.47
19029169--19029207	20	2.1	19	85	9	53	71	0	0	28	0.86
19029149--19029207	18	3.2	18	73	7	57	71	1	1	25	1.05
19029253--19029332	22	3.7	22	85	8	112	55	3	1	40	1.26
19029251--19029332	43	1.9	42	90	7	130	54	3	1	40	1.26
19029254--19029332	20	3.7	21	81	11	99	54	3	1	40	1.26
19029252--19029343	42	2.2	43	84	5	116	60	3	1	34	1.20
19029631--19029677	24	1.9	25	91	4	78	25	4	0	70	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19029845--19029904	26	2.3	27	75	16	63	61	5	1	31	1.27
19029910--19029957	21	2.3	21	89	7	71	56	2	0	41	1.11
19029912--19029968	21	2.8	21	79	15	66	54	3	1	40	1.28
19029274--19030474	636	1.9	638	95	1	2207	42	4	5	47	1.47
19030192--19030246	19	2.8	20	72	8	60	23	1	5	69	1.19
19030299--19030369	19	3.8	18	72	9	52	26	1	2	69	1.11
19030337--19030375	19	2.1	19	95	0	69	15	2	5	76	1.06
19031436--19031476	19	2.2	19	100	0	82	24	14	29	31	1.95
19033712--19033755	21	2.1	21	87	4	63	68	0	2	29	1.02
19034613--19034667	28	2.0	28	88	0	83	27	5	47	20	1.72
19034721--19034797	8	9.6	8	76	14	61	11	2	10	75	1.15
19034725--19034788	25	2.6	24	73	7	65	14	1	9	75	1.12
19034755--19034787	17	1.9	17	93	0	57	18	3	0	78	0.87
19034959--19034984	9	2.9	9	100	0	52	0	7	0	92	0.39
19035041--19035897	49	17.6	49	78	7	697	37	20	12	29	1.89
19035072--19035897	96	8.5	95	76	9	611	37	20	12	29	1.89
19048167--19048199	10	3.1	11	86	8	50	15	3	0	81	0.80
19048321--19048364	12	3.9	12	72	27	51	70	0	0	29	0.88
19048320--19048380	21	3.0	21	80	9	72	67	1	0	31	1.01
19049335--19049387	7	7.1	7	77	10	52	3	0	15	81	0.83
19049335--19049388	8	7.1	8	75	12	51	3	0	14	81	0.82
19049353--19049445	24	3.9	24	74	14	77	11	1	10	76	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19049337--19049486	42	3.6	42	86	4	189	12	0	10	76	1.05
19049393--19049455	10	6.1	10	74	20	58	12	1	9	76	1.09
19049411--19049463	17	3.1	17	83	5	72	15	1	5	77	1.04
19049367--19049479	24	5.0	23	72	20	87	15	0	7	75	1.08
19049423--19049477	17	3.2	17	80	17	60	18	0	5	76	0.97
19050662--19050887	122	1.9	119	86	6	321	30	7	8	53	1.59
19050946--19051027	14	5.8	13	72	16	65	26	3	1	68	1.14
19050949--19051032	21	4.1	20	75	19	75	26	3	1	69	1.12
19050945--19050978	17	1.9	18	88	5	52	20	5	0	73	1.04
19051036--19051094	19	3.2	20	81	11	63	72	6	0	20	1.06
19051127--19051165	20	1.9	21	94	5	71	41	25	15	17	1.89
19057177--19057208	13	2.4	14	94	5	57	18	0	0	81	0.70
19058065--19058102	3	12.7	3	100	0	76	34	0	0	65	0.93
19058808--19058849	21	1.9	22	85	9	59	78	14	2	4	1.01
19069236--19069274	20	2.0	20	94	0	69	20	20	12	46	1.83
19069849--19070075	48	4.7	48	77	6	199	30	14	17	37	1.89
19070357--19070403	12	3.8	12	83	10	60	0	12	4	82	0.80
19070357--19070403	24	2.0	24	88	8	71	0	12	4	82	0.80
19071395--19071442	24	2.0	23	84	4	60	29	2	2	66	1.14
19071545--19071570	11	2.4	11	100	0	52	73	0	0	26	0.84
19072434--19072512	39	2.0	39	100	0	158	37	10	2	49	1.50
19072440--19072500	17	3.3	17	67	20	50	42	8	1	47	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19072650--19072683	15	2.3	15	90	10	52	23	0	2	73	0.97
19073994--19074097	6	16.5	6	66	20	52	19	6	0	74	1.04
19073991--19074040	26	1.9	26	88	8	75	14	8	0	78	0.97
19074000--19074084	19	4.5	19	74	18	70	18	8	0	72	1.08
19074114--19074141	14	2.0	14	100	0	56	21	0	0	78	0.75
19077925--19078003	41	1.9	41	92	0	131	30	15	11	43	1.82
19078617--19078964	122	2.8	121	81	7	389	37	8	6	47	1.59
19080144--19080173	3	10.0	3	100	0	60	66	0	0	33	0.92
19081617--19081663	11	4.4	11	72	5	51	0	6	8	85	0.75
19081698--19081740	6	7.2	6	89	0	59	23	0	0	76	0.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127