genome.fa.s656.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  126  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25611768--25611845	36	2.2	37	83	6	106	53	2	0	43	1.14
25611777--25611872	33	2.8	35	84	9	110	54	2	0	43	1.12
25611822--25611931	52	2.1	53	83	10	136	49	0	0	50	1.07
25611856--25611934	18	4.5	18	68	20	51	48	0	0	51	1.00
25611851--25611951	27	3.8	26	72	19	84	46	0	0	52	1.07
25614796--25614842	24	2.0	24	83	8	60	17	25	23	34	1.96
25617801--25618377	131	4.2	132	80	13	604	49	5	10	34	1.61
25618023--25618322	75	4.0	74	78	11	308	49	5	8	36	1.56
25618031--25618322	147	2.0	149	85	8	400	50	4	8	36	1.55
25628862--25628905	17	2.6	16	82	10	52	77	0	13	9	0.99
25628879--25628908	14	2.1	14	93	0	51	76	0	16	6	0.99
25629624--25629655	16	2.0	16	93	0	55	34	21	6	37	1.79
25629920--25630135	43	5.0	44	77	3	199	28	10	18	42	1.83
25629922--25630112	87	2.2	87	82	1	231	28	9	16	44	1.80
25630052--25630284	43	5.2	46	82	6	239	23	11	19	46	1.81
25630107--25630284	89	2.0	89	87	4	259	21	11	20	46	1.83
25630052--25630284	44	5.2	45	82	7	242	23	11	19	46	1.81
25630147--25630311	89	1.9	88	83	5	208	23	13	19	43	1.87
25630660--25630910	133	1.9	133	99	0	493	50	7	9	33	1.61
25632144--25632180	2	18.5	2	94	0	65	45	0	0	54	1.00
25635767--25635791	2	12.5	2	100	0	50	48	0	0	52	1.00
25636867--25636910	2	21.0	2	88	4	61	45	2	4	47	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25641088--25641150	26	2.4	26	91	0	99	47	6	12	33	1.67
25644620--25644969	124	2.8	124	99	0	691	36	17	13	32	1.88
25644842--25644872	15	2.1	15	100	0	62	41	12	12	32	1.81
25652135--25652166	2	16.0	2	100	0	64	50	0	0	50	1.00
25652815--25652843	2	14.5	2	100	0	58	51	0	0	48	1.00
25657074--25657111	2	19.0	2	100	0	76	0	50	0	50	1.00
25657902--25657928	6	4.5	6	100	0	54	0	33	0	66	0.92
25658336--25658400	2	33.0	2	89	3	69	47	7	1	43	1.41
25658835--25658860	6	4.3	6	100	0	52	0	53	0	46	1.00
25663981--25664013	6	5.7	6	96	3	59	72	12	0	15	1.12
25664044--25664228	58	3.1	58	79	9	212	37	8	8	46	1.63
25664225--25664317	5	18.8	5	73	12	68	76	1	6	16	1.05
25664260--25664317	14	3.9	14	77	8	62	75	0	3	20	0.94
25664293--25664332	11	3.6	11	80	12	55	70	0	2	27	1.01
25664225--25664301	29	3.0	23	82	14	82	77	1	7	12	1.03
25664840--25664876	19	1.9	19	94	0	65	40	13	8	37	1.74
25665236--25665317	20	4.2	19	75	20	71	68	2	3	25	1.18
25665214--25665342	68	1.9	68	81	9	156	65	2	4	27	1.24
25665366--25665429	25	2.7	25	78	7	62	68	3	6	21	1.26
25665411--25665441	16	2.0	16	93	6	55	83	3	0	12	0.75
25665666--25666044	42	9.0	41	89	2	533	37	22	15	24	1.93
25665664--25666041	125	3.0	126	88	2	573	37	21	16	24	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25665666--25666042	167	2.2	168	92	0	621	37	22	15	23	1.93
25667293--25667356	27	2.5	25	82	5	83	7	12	0	79	0.92
25667308--25667358	23	2.3	22	87	9	77	7	11	0	80	0.90
25672785--25672813	4	7.2	4	100	0	58	48	0	0	51	1.00
25674672--25674704	2	16.0	2	93	6	57	48	3	0	48	1.17
25675160--25675205	2	23.0	2	86	0	65	50	6	0	43	1.28
25686136--25686198	26	2.4	26	91	0	99	33	12	6	47	1.67
25690270--25690305	3	12.0	3	93	0	63	63	0	36	0	0.94
25696108--25696132	2	12.5	2	100	0	50	48	0	0	52	1.00
25696159--25696448	131	2.2	134	89	6	459	34	8	6	50	1.60
25696362--25696577	75	2.9	72	79	12	224	37	8	5	49	1.56
25696171--25696481	131	2.4	131	87	8	393	32	9	6	52	1.57
25696472--25696503	16	2.0	16	93	0	55	34	0	6	59	1.23
25696394--25696589	75	2.7	73	85	8	263	38	7	5	48	1.54
25696488--25696884	133	3.0	131	87	6	514	35	9	5	49	1.58
25696915--25696944	5	5.8	5	92	7	51	80	0	0	20	0.72
25696915--25696945	16	1.9	16	93	0	53	80	0	0	19	0.71
25699865--25699907	2	21.5	2	95	0	68	53	0	0	46	1.00
25702098--25702130	2	17.0	2	93	6	59	51	0	0	48	1.00
25702635--25702661	11	2.5	11	100	0	54	62	0	0	37	0.95
25703116--25703144	2	15.0	2	92	7	51	51	0	0	48	1.00
25703328--25703393	33	1.9	34	82	11	82	48	4	4	42	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25704749--25704786	18	2.1	18	85	9	51	23	18	18	39	1.92
25710074--25710115	21	2.0	21	90	0	66	35	33	4	26	1.77
25710793--25710836	22	2.0	22	95	0	79	25	9	15	50	1.74
25710793--25710843	22	2.5	20	81	12	59	25	11	13	49	1.76
25713973--25714018	24	1.9	24	90	0	74	21	6	19	52	1.69
25715599--25715648	16	3.0	17	79	5	57	16	0	4	80	0.87
25715941--25716006	21	3.1	21	82	4	80	40	3	0	56	1.15
25721707--25721748	19	2.1	21	86	8	61	54	2	0	42	1.13
25722198--25722229	11	2.9	11	90	0	55	56	6	0	37	1.25
25728323--25728392	21	3.2	22	84	11	83	14	0	7	78	0.95
25728332--25728401	26	2.7	25	79	14	72	15	1	5	77	1.03
25728457--25728510	27	2.0	28	89	7	85	55	3	3	37	1.35
25728617--25728645	8	3.8	8	90	9	51	75	0	0	24	0.80
25735288--25735316	15	1.9	15	100	0	58	27	3	0	68	1.05
25736135--25736358	124	1.9	120	87	7	339	32	12	8	46	1.72
25736135--25736364	57	3.8	60	86	9	317	32	12	8	46	1.73
25736526--25736561	18	2.0	18	100	0	72	44	16	33	5	1.71
25736583--25736631	26	1.9	26	91	4	82	44	16	4	34	1.66
25737003--25737039	14	2.4	17	86	13	53	75	2	5	16	1.10
25737064--25737174	16	6.6	16	69	19	66	64	7	0	27	1.19
25737130--25737163	3	10.7	3	87	12	50	64	2	0	32	1.08
25737026--25737160	67	1.9	72	81	14	167	62	5	1	30	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25737022--25737177	67	2.3	71	78	12	166	63	5	1	29	1.25
25737365--25737424	1	60.0	1	79	0	66	0	0	10	90	0.47
25737368--25737424	8	6.9	8	84	15	80	0	0	10	89	0.49
25737357--25737424	19	3.8	19	83	15	99	0	0	11	88	0.52
25737357--25737423	34	2.0	34	96	0	125	0	0	11	88	0.53
25737431--25737923	42	12.0	41	86	8	666	37	21	17	22	1.94
25737431--25737923	81	6.0	81	91	5	794	37	21	17	22	1.94
25743889--25743932	21	2.2	20	87	4	61	56	2	0	40	1.11
25750091--25750130	21	1.9	21	85	10	55	80	2	15	2	0.93
25751597--25751777	98	1.8	99	80	1	220	24	12	20	41	1.88
25752008--25752045	19	2.0	20	84	5	51	81	2	5	10	0.94
25753225--25753253	11	2.7	11	94	5	51	75	0	0	24	0.80
25754274--25754313	18	2.2	19	86	4	55	60	0	0	40	0.97
25754818--25754888	27	2.7	26	80	10	72	49	2	1	46	1.25
25754896--25754934	19	2.1	19	90	0	60	41	0	0	58	0.98
25756426--25756473	23	2.2	21	82	10	53	35	6	12	45	1.67
25756432--25756483	23	2.3	23	83	6	72	36	3	11	48	1.58
25756912--25757025	44	2.5	46	81	8	119	47	6	5	41	1.51
25759951--25760004	15	3.6	15	78	9	65	62	0	3	33	1.12
25762078--25762117	20	2.0	20	100	0	80	20	30	5	45	1.72
25766663--25766691	8	3.8	8	90	9	51	24	0	0	75	0.80
25766799--25766851	25	2.0	26	85	7	72	37	3	5	52	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25766986--25767040	24	2.3	24	81	6	67	27	20	27	25	1.99
25767448--25767493	18	2.5	19	85	3	58	60	21	0	17	1.35
25773189--25773228	7	5.9	7	82	5	55	82	0	17	0	0.67
25773189--25773227	20	2.0	20	89	0	60	84	0	15	0	0.62
25773187--25773228	13	3.1	14	82	6	59	78	0	21	0	0.75
25781594--25781645	22	2.5	20	85	11	77	55	0	1	42	1.10
25781952--25782004	16	3.7	15	80	11	58	81	5	0	13	0.86
25783911--25783952	21	2.0	21	95	0	75	38	21	23	16	1.93
25786768--25786811	22	2.0	22	95	0	79	50	15	9	25	1.74
25788697--25788792	23	4.1	24	69	16	67	40	0	1	58	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127