genome.fa.s656.2.7.7.80.10.50.1000.88.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  88  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16684419--16684535	47	2.7	43	82	13	148	52	12	5	29	1.63
16684439--16684515	23	3.3	23	71	10	75	50	14	6	28	1.67
16684424--16684526	47	2.2	47	92	1	170	54	10	4	30	1.56
16685755--16685798	19	2.3	18	82	17	54	52	13	4	29	1.60
16688425--16688458	12	2.8	12	90	0	50	26	8	20	44	1.81
16691652--16691702	17	3.2	16	81	10	61	47	1	0	50	1.12
16693265--16693299	17	2.1	17	94	0	61	62	5	5	25	1.40
16692711--16693427	376	1.9	374	84	5	973	43	8	6	41	1.59
16694858--16694976	21	5.6	21	75	5	96	35	9	10	45	1.70
16694864--16694977	42	2.7	43	76	2	113	35	8	10	44	1.70
16694934--16694976	22	2.0	22	90	0	68	32	9	9	48	1.67
16695280--16695465	22	8.5	22	65	5	54	38	8	5	48	1.56
16695789--16695818	16	1.9	15	93	6	51	86	3	10	0	0.67
16695789--16695822	17	2.0	17	88	0	50	85	2	11	0	0.71
16696483--16696549	28	2.4	27	92	4	116	31	43	14	10	1.80
16712522--16712552	13	2.4	13	100	0	62	41	16	22	19	1.89
16714900--16715229	151	2.2	151	78	4	330	56	9	17	16	1.67
16716974--16717174	104	1.9	104	85	4	280	35	14	16	33	1.89
16717151--16717203	22	2.4	22	77	0	61	28	26	15	30	1.96
16717312--16717468	82	1.9	81	92	1	260	36	13	15	33	1.87
16717461--16717512	22	2.4	22	83	0	68	30	17	15	36	1.91
16717789--16717838	26	1.9	26	87	0	73	78	16	2	4	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16720689--16720737	23	2.1	23	81	7	55	42	18	20	18	1.89
16721996--16722045	26	1.9	26	83	0	64	24	22	24	30	1.99
16722067--16722121	3	18.7	3	84	3	76	29	3	0	67	1.08
16722067--16722126	29	2.1	29	93	0	102	26	5	0	68	1.10
16722971--16723052	5	15.8	5	73	22	55	19	2	3	74	1.08
16722965--16723004	19	2.2	18	86	4	53	15	5	2	77	1.04
16722983--16723055	38	1.9	38	86	10	105	21	2	4	71	1.16
16732439--16732522	42	2.0	42	85	0	114	45	7	14	33	1.72
16733145--16733191	23	2.1	21	84	7	58	19	10	25	44	1.82
16738784--16739281	247	2.0	247	91	0	807	34	14	11	39	1.82
16743617--16743809	42	4.6	42	79	5	178	31	13	11	44	1.79
16747698--16747737	20	2.0	20	85	5	53	47	10	0	42	1.37
16749514--16749863	22	16.3	22	72	7	123	49	6	7	36	1.56
16749696--16749735	15	2.7	15	88	3	55	47	2	2	47	1.29
16749758--16749869	43	2.6	43	94	4	190	49	8	5	37	1.55
16749794--16749992	43	4.6	44	76	9	149	48	6	10	35	1.62
16750031--16750071	19	2.2	19	91	8	66	48	2	9	39	1.49
16750066--16750114	22	2.2	22	88	0	71	51	6	6	36	1.52
16750136--16750219	22	3.9	21	72	12	53	45	3	5	45	1.45
16750162--16750356	22	8.9	22	72	5	99	47	9	6	36	1.62
16750281--16750373	22	4.2	22	81	0	87	47	7	7	37	1.60
16750611--16750713	44	2.3	44	78	6	102	51	3	7	36	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16750659--16750947	22	13.1	22	70	8	113	48	3	8	39	1.51
16750667--16750707	11	3.7	11	86	0	55	56	0	2	41	1.13
16750757--16750898	44	3.2	43	76	11	135	52	4	4	38	1.45
16750993--16751034	22	1.9	22	85	0	57	54	4	9	30	1.53
16751008--16751102	44	2.2	44	81	7	104	45	8	8	37	1.65
16751018--16751122	44	2.4	44	79	9	115	43	7	10	38	1.68
16751184--16751234	22	2.3	22	86	0	66	49	11	3	35	1.58
16751241--16751306	22	3.0	22	74	10	73	43	1	9	45	1.44
16751273--16751347	37	2.1	36	82	2	87	48	2	6	42	1.43
16756694--16756731	1	38.0	1	100	0	76	0	0	0	100	0.00
16767684--16767715	13	2.4	14	94	5	57	12	0	15	71	1.14
16771180--16771241	19	3.3	19	81	0	70	38	12	11	37	1.80
16777208--16777248	13	3.2	13	82	0	55	53	0	0	46	1.00
16777206--16777259	26	2.0	26	85	7	72	55	1	0	42	1.10
16777295--16777340	16	2.9	16	80	0	56	47	6	6	39	1.55
16783735--16783787	19	2.8	18	83	8	70	15	16	20	47	1.83
16783913--16784147	56	4.2	56	78	3	231	27	14	24	33	1.94
16801856--16801904	24	2.0	25	88	4	73	10	14	16	59	1.61
16804859--16804907	15	3.3	15	85	5	64	30	6	18	44	1.74
16806218--16806252	16	2.1	17	89	5	54	60	5	22	11	1.52
16807549--16807603	28	1.9	29	82	10	69	10	12	3	72	1.24
16811668--16811703	15	2.4	15	86	13	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16812743--16812967	75	3.0	77	76	9	223	47	3	9	40	1.51
16812742--16812945	76	2.7	74	76	8	189	48	3	8	39	1.50
16812928--16812998	37	1.9	37	88	5	108	43	0	14	42	1.45
16813426--16813482	24	2.2	25	81	12	71	45	1	10	42	1.49
16813438--16813483	24	1.9	24	95	0	83	43	0	13	43	1.43
16814294--16816173	746	2.5	741	81	7	2003	34	18	9	37	1.84
16818280--16818319	19	2.0	20	85	4	55	62	2	0	35	1.09
16827274--16827494	73	3.0	71	78	11	223	50	7	7	34	1.59
16827603--16827653	18	2.9	18	71	11	52	25	19	13	41	1.88
16827603--16827676	34	2.2	34	82	0	85	27	16	12	44	1.82
16829948--16829980	10	3.4	10	87	4	50	81	0	18	0	0.68
16830632--16830666	9	3.9	9	96	0	61	42	0	22	34	1.54
16831026--16831054	4	7.2	4	100	0	58	75	0	0	24	0.80
16832303--16832343	11	3.9	10	90	3	55	17	2	7	73	1.17
16832302--16832343	22	2.0	21	90	4	66	16	2	7	73	1.15
16833710--16833774	10	6.7	9	79	13	67	83	4	9	3	0.90
16833712--16833774	20	3.2	19	88	6	90	84	4	7	3	0.87
16834979--16835027	25	2.0	23	85	14	64	10	2	16	71	1.22
16834979--16835027	24	2.0	24	84	7	64	10	2	16	71	1.22
16835216--16835276	7	8.4	7	77	18	54	77	1	1	19	0.95
16835194--16835271	6	13.0	6	72	14	63	75	2	2	19	1.03
16835194--16835271	13	6.5	12	75	11	63	75	2	2	19	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16835230--16835277	17	2.9	18	79	14	59	77	0	2	20	0.88
16836794--16836856	26	2.5	26	81	2	74	12	11	26	49	1.74
16836821--16836856	13	2.8	13	91	0	54	13	5	27	52	1.63
16838201--16838405	109	1.9	109	93	2	358	11	23	14	51	1.74
16839689--16839722	9	3.8	9	92	0	59	23	0	0	76	0.79
16839688--16839744	26	2.2	25	82	11	71	24	1	0	73	0.92
16839690--16839749	18	3.6	17	77	14	54	26	1	0	71	0.95
16839694--16839750	15	3.6	16	75	20	57	26	1	0	71	0.95
16840102--16840131	13	2.3	13	100	0	60	10	0	6	83	0.81
16840171--16840231	31	2.0	31	90	0	95	40	13	22	22	1.89
16840472--16840552	29	2.8	29	81	5	94	28	16	25	29	1.96
16840351--16840549	28	6.8	28	69	12	112	29	17	22	30	1.97
16840595--16840736	32	4.4	33	80	8	150	28	14	16	40	1.88
16840595--16840736	64	2.2	65	83	6	173	28	14	16	40	1.88
16840561--16840764	32	6.4	31	76	9	117	28	14	17	39	1.89
16841008--16841134	29	4.4	29	82	0	128	29	18	21	29	1.97
16841257--16841324	29	2.3	29	82	9	77	50	13	16	20	1.78
16842162--16842242	23	3.4	24	70	20	62	3	18	3	74	1.12
16842161--16842222	17	3.7	16	73	14	54	3	14	4	77	1.06
16844214--16844264	21	2.4	21	90	0	75	33	9	31	25	1.88
16846911--16846980	31	2.3	31	78	7	72	65	10	5	18	1.42
16848865--16848912	14	3.1	14	78	18	51	25	2	0	72	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16849558--16849582	3	8.3	3	100	0	50	32	0	0	68	0.90
16849598--16849646	20	2.3	21	86	6	64	22	0	0	77	0.77
16854483--16854566	22	3.8	22	72	21	61	25	3	1	70	1.11
16854505--16854565	15	4.1	14	77	14	61	27	1	1	68	1.08
16856507--16856554	13	3.8	13	80	5	62	50	22	8	18	1.74
16856483--16856524	21	2.0	21	85	0	57	52	21	2	23	1.59
16857603--16857641	21	1.9	20	84	5	51	71	0	23	5	1.05
16859737--16859788	26	2.0	26	84	0	68	25	1	7	65	1.30
16864342--16864799	250	1.8	249	82	5	584	43	10	18	27	1.82
16866063--16866139	28	2.8	28	75	11	79	35	25	11	27	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127