genome.fa.s656.2.7.7.80.10.50.1000.81.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25818110

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   

This is table  81  of  127  ( 15156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15483287--15483532	118	2.1	119	81	8	279	47	15	19	18	1.83
15487823--15487849	14	1.9	14	100	0	54	55	0	22	22	1.44
15495225--15495356	3	43.0	3	76	13	110	63	3	3	29	1.27
15499824--15499862	13	2.9	14	81	11	55	23	7	10	58	1.56
15501024--15501769	160	4.6	161	80	6	685	32	10	14	42	1.79
15501097--15501704	319	1.9	321	81	4	735	32	10	14	42	1.80
15501092--15501793	319	2.2	314	76	8	694	32	10	14	42	1.81
15503568--15503593	2	13.0	2	100	0	52	50	0	0	50	1.00
15505855--15505887	13	2.6	13	85	4	50	54	6	0	39	1.25
15508580--15508627	19	2.4	22	80	16	59	33	2	0	64	1.05
15508762--15508820	3	20.7	3	74	22	56	28	1	0	69	0.98
15509699--15509745	12	3.9	12	77	5	51	74	8	2	14	1.15
15509727--15509769	7	6.0	7	79	15	52	83	4	0	11	0.78
15510587--15510803	106	2.0	106	98	0	416	37	3	8	50	1.50
15510795--15510834	16	2.6	16	88	4	55	40	0	10	50	1.36
15512621--15512651	2	15.5	2	100	0	62	51	0	0	48	1.00
15513647--15513707	29	2.1	29	81	6	70	47	8	6	37	1.59
15517734--15517759	2	13.0	2	100	0	52	50	0	0	50	1.00
15527381--15527456	35	2.2	35	95	0	134	17	5	35	42	1.72
15527393--15527467	35	2.1	35	85	0	96	20	5	33	41	1.75
15531089--15531136	25	1.9	24	83	8	60	43	2	2	52	1.24
15532961--15532985	13	1.9	13	100	0	50	76	8	0	16	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15547043--15547091	21	2.2	21	78	7	53	71	2	2	24	1.07
15547134--15547189	16	3.5	15	83	11	67	78	3	0	17	0.89
15547129--15547189	24	2.5	24	82	12	79	77	3	0	19	0.91
15547134--15547189	8	7.1	7	83	16	58	78	3	0	17	0.89
15552932--15552987	18	3.1	18	76	10	51	30	0	1	67	1.01
15556274--15556361	35	2.5	36	81	1	106	30	4	21	43	1.73
15557374--15557438	21	3.1	21	80	8	78	43	0	26	30	1.55
15557412--15557449	19	2.1	19	90	9	62	44	0	26	28	1.54
15557562--15557608	21	2.2	21	88	7	69	42	0	19	38	1.51
15557577--15557625	23	2.2	21	85	7	62	46	0	22	30	1.52
15559090--15559124	15	2.3	15	90	9	54	17	0	2	80	0.84
15567056--15567108	25	2.1	25	96	0	97	41	16	15	26	1.88
15566897--15567243	183	1.9	182	90	0	559	34	14	16	33	1.90
15569032--15569074	20	2.2	20	83	8	52	48	13	6	30	1.69
15570446--15570733	65	4.4	65	75	8	190	19	20	14	45	1.85
15570523--15570768	134	1.8	133	81	10	306	19	21	15	43	1.87
15571164--15571217	3	18.0	3	88	0	81	35	3	0	61	1.14
15571950--15572002	21	2.6	20	79	8	54	16	3	3	75	1.10
15572072--15572102	12	2.5	13	94	5	55	77	0	0	22	0.77
15573569--15573617	25	2.0	25	83	0	62	44	14	10	30	1.78
15578606--15579025	145	2.9	141	77	8	398	40	10	12	35	1.78
15579633--15579724	36	2.6	35	81	5	112	56	8	9	25	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15579625--15579806	72	2.5	72	80	0	184	51	11	13	23	1.74
15579705--15579806	36	2.8	35	72	15	91	51	11	14	21	1.74
15579845--15580084	35	6.9	35	71	8	132	47	8	20	23	1.77
15579850--15580174	35	9.3	35	69	9	125	48	9	19	23	1.77
15580007--15580243	70	3.4	70	77	2	233	48	10	18	22	1.78
15581412--15581469	16	3.6	16	77	11	64	27	6	24	41	1.80
15581412--15581477	17	4.0	17	78	7	64	25	9	24	40	1.84
15585663--15585687	2	12.5	2	100	0	50	52	0	0	48	1.00
15590445--15590604	43	3.8	42	79	4	153	36	12	21	28	1.90
15590538--15590642	42	2.5	41	79	1	111	40	10	16	32	1.82
15590746--15590813	19	3.4	19	67	15	55	38	14	25	22	1.92
15590750--15590906	79	2.0	77	80	8	174	37	12	24	26	1.90
15590875--15590946	34	2.1	34	85	10	94	43	9	19	27	1.82
15591454--15591543	34	2.5	36	80	10	96	42	10	16	31	1.81
15590824--15593104	575	4.0	575	92	2	3836	34	17	12	35	1.87
15594590--15594647	30	1.9	30	89	0	89	60	13	1	24	1.43
15596805--15596928	42	3.0	42	84	0	167	37	16	16	29	1.92
15596868--15597087	104	2.1	104	82	0	287	31	14	18	35	1.90
15596763--15597032	146	1.8	147	84	2	373	33	15	16	33	1.91
15597247--15597374	68	1.9	67	80	7	152	47	12	13	26	1.78
15597280--15597413	68	2.0	68	81	8	157	48	12	12	26	1.77
15597877--15597940	32	2.0	32	90	0	101	29	14	17	39	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15597915--15597954	21	2.0	21	85	5	55	25	12	12	50	1.75
15599414--15599472	27	2.2	27	78	3	66	5	18	0	76	0.97
15599391--15599472	13	6.2	13	73	16	51	6	17	1	75	1.06
15600817--15600933	7	17.7	7	74	15	63	17	0	35	46	1.55
15600769--15600933	20	8.5	20	71	16	107	16	1	36	44	1.56
15600838--15600933	26	3.7	25	81	6	102	14	1	37	46	1.52
15602732--15602774	21	2.0	21	86	13	61	69	0	2	27	1.00
15602729--15602782	22	2.4	22	76	17	58	64	0	1	33	1.04
15602795--15602832	16	2.5	15	84	16	51	42	0	0	57	0.98
15603573--15603621	15	2.9	19	72	27	56	53	0	0	46	1.00
15605372--15605480	52	2.1	52	86	3	148	29	13	6	50	1.67
15607198--15607245	10	5.0	10	82	10	64	41	8	0	50	1.33
15607198--15607251	6	9.7	6	80	15	53	40	7	0	51	1.30
15607198--15607252	16	3.7	16	81	18	73	41	7	0	50	1.30
15615946--15616006	11	5.8	11	71	11	56	42	1	3	52	1.27
15615987--15616068	33	2.5	34	80	6	87	46	0	2	51	1.14
15620486--15620561	33	2.3	33	93	0	116	36	0	15	47	1.46
15620488--15620539	11	4.7	11	74	9	52	32	0	15	51	1.43
15621945--15622272	129	2.5	128	85	2	426	43	10	4	41	1.58
15627032--15627064	12	2.6	13	85	4	50	42	12	42	3	1.57
15631837--15631904	30	2.3	30	87	5	93	35	8	35	20	1.84
15633134--15633196	31	2.0	31	93	0	108	50	23	1	23	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15635067--15635136	27	2.5	27	82	11	79	60	1	4	34	1.25
15635234--15635288	20	2.8	20	72	13	51	63	1	3	30	1.22
15635304--15635353	10	5.0	10	87	0	64	44	4	0	52	1.20
15635479--15635527	25	2.0	25	87	0	71	40	2	2	55	1.23
15635764--15635794	3	10.3	3	100	0	62	32	0	0	67	0.91
15636586--15636665	27	2.9	26	80	17	74	17	7	0	75	1.03
15636584--15636637	5	9.8	5	83	15	54	16	5	0	77	0.94
15636644--15636668	8	3.1	8	100	0	50	16	0	0	84	0.63
15647780--15648534	119	6.3	119	79	3	705	18	20	14	46	1.84
15647798--15648534	239	3.1	238	80	3	856	18	20	14	46	1.84
15647744--15648532	358	2.2	357	80	4	856	18	20	14	46	1.84
15648712--15648782	26	2.7	26	89	8	101	19	26	21	32	1.97
15649650--15649695	18	2.6	17	83	10	56	13	2	2	82	0.85
15649650--15649724	17	4.4	17	72	8	62	14	6	1	77	1.04
15653732--15653766	17	2.0	18	88	5	54	62	8	0	28	1.24
15660561--15660596	18	1.9	19	88	5	56	58	0	2	38	1.13
15660622--15660876	55	4.5	54	75	11	192	36	9	5	49	1.57
15660778--15660905	57	2.3	57	81	9	147	39	4	2	53	1.35
15662515--15662584	5	13.4	5	80	16	72	75	0	4	20	0.96
15662517--15662584	11	6.5	11	78	20	74	75	0	4	20	0.98
15662526--15662573	13	3.8	13	86	13	66	72	0	6	20	1.05
15662509--15662587	17	4.9	17	79	17	89	73	0	5	21	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15662512--15662578	31	2.2	30	89	7	100	74	0	4	20	0.99
15662503--15662584	24	3.5	23	72	24	73	74	1	3	20	1.04
15662503--15662619	48	2.5	46	76	20	125	70	1	4	23	1.13
15663652--15663813	7	24.4	7	64	21	57	49	35	1	13	1.50
15663699--15663813	18	6.5	18	73	16	80	50	33	0	14	1.49
15669430--15669474	22	2.0	22	86	8	63	80	0	11	8	0.92
15669449--15669478	14	2.1	14	93	0	51	86	0	10	3	0.67
15669430--15669477	24	2.0	24	83	4	60	81	0	10	8	0.88
15670522--15670551	13	2.3	13	94	0	51	83	6	6	3	0.90
15671737--15672275	125	4.3	125	81	6	608	33	14	13	38	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127